Spg028201 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028201
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	PMD domain-containing protein
Location	scaffold2: 41011111 .. 41017047 (-)
RNA-Seq Expression	Spg028201
Synteny	Spg028201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTTGGAGCTTGAAGTCTTCCAGTCTTGAAGGAGTCTTCAGTCTTCAAGAACTGTTAAGCACTTGGAAACTTATGGATTTCAGAGTCTTCAGTCTTCTGTCTTGGGGGAATTTCTTTGAATTCTCTAAGTCTTGTTGAGAGCTCCAAAATTCTAAACCCTTGAAATGGAGGAGAACCCCTTTATTTATAGAGTTCTCGCTGGATGGGCCCTGGTGACTTTTGGGCCTAACAACTTGGGCAGGCTTTATTGGTCTTGAGCTCAACTAGTTAGTCTTGGGTTTAGTTCATATTTGACCCAAAACCATATGACCCAAATATTTAAAAGACCCAAATTTGATCCAAATCATTATTATTTTTTTAATTAATTGGTCAAATTAATTAATTTGATCAAAATAATTTAATTTTAATTAATTGATCAAATGAAAATTTGACTATATAAATTTATAATTGGCCAACTTTGTCTTCAAATTTAATTTGGGACACATGTCAATTTATAATTGGTCCCAAATTTAATTAATTATAATTTCATCATTAATTTCATGTAATGACGTGGCAATTTTTGGTTGGTCAAAATTTCTCCTTCAACAAATGCCCCCTTTTCGAGATTTAGGCACAAATCATGTGTGGATGAATTGCGAAAATAAATTATTTGGAATCAATTTTTTAAAACTTTGACTCCGTTTGATGCATCAAAATATGAAATTTGGTCAAAATTTTGATTGATTTTTTTACACATCTGTTATGCCGATTTAATCAAAATTCGAAATTTTCTTCTTCCTTTTTTTTTCTTGAAATTTTGATCCACTTGCTTGGCGACAAATTGAAATTTGGACCTCAATTGGATTTTAACTCCATATTGAATTTCAGTCGTGTCCAAGTTCTATGTAACTTTGAATTTGGAGTAATTTCTCTCTATTTTGAATTTGACTCGAGTTTAATTTGGGGTTGAATTATGATTATGCCCAAATTTTCTGAAGATAAATTCAAGTTTAGATAACTTGATTTTGAACTTTACGCCATTTTTTTTTAATTTGGGATAACGCTTAAAATATGCCCAAATCTTAATGGAAGTAAATATTAAATTCTATCCAAAATTTAGCTTGAATTTGGGATAGGAATCTAACGTGAACCTCGGAATTTGATTTGGGATAGAACAAATTCAATCCTAACCAAATTTAATTTGATTCAAATTGAATCAAATTCAAGATCTATCTAATTTATCTTGGACAAATTTGAATTTAGGTTGCAAATTAATTCAAATCCAATCTCATATTTTCGGATTAAAATTTAATCCAAAACCAAATTTGATACGGATTTCTATTGGAGATAAGATTTAATTTAAAATTGGATCCAAGCTTATAAATACCCCAAAGCATGCTCTCCTCCCCCTTATTTTGCAGCTCTCAGCAATCAAGGTATTCTTTCTCTTCTTCTTTTTTTTTCCACACATGATGGTTAATTTCTTTTCTTTCGCTTATTAATTGGAGTTGAATGGGTTGAATGAGTTTTCTTTTTTTTATTATTCCTTTCTTTCTTTGTGCTGTAATTAGATATCCTTTACTTTGTAGAGAGAGGAAGAAAGAGAGAGGCATGTGACACCAAGGGTGAGAGCAAGAGTGAAAATAGTGGAGAATTTCAAGCTGAGATTGGAAGAATGAGTTTCATGGTATTTTAATGGGAGAAATAATGAGAAAGAATGAGGGATTTTAACGGAGAGAGAGAGTGGAAAGAGAGAGAGAAATAAAAGAGATGAGGGAAAAGTGGGGAAGAAGGATGGAAGAGAAAGAATGGGGGATGAAATCGTGGATTACTTTCCACTTGATTTTTTTTTTTTAATTCCACTATCTTCACAATTTCCTTTCTTTTTTTTTTCCCTTGTTTCCTTACTTCCTTTTCTTTTCTTCAACTCTTTTTTTTTTTCACTTTGCTCATGCTTTTTTTTTTTTCGATTTTTCTTCTCTTTTTTTTAACTTCTTTTTTTTTTCTTTTATTTTCACATTTTCAAGCTTTTTTTTAATGCTTTCTTTGATATATATACATATGTAAAATTTAATTTGTGCAATATTTGTACATATGCATATAATTTCAACATTTGTTTTTGTAGGAACAATCTTCATGATCCTTGCTTATAGTTCATAAAGGTAAACTTCCAAAGTAAACCGACATTGACTAATTTCAAAATTTCCATAAGCTTCCAACATCTTTTATTTGATTTGATTTGATTTTTTTTTTTTTTTTTGCCCATTTTTTTTAAGGAAAAAAGCTTGACTTGGAGACTTGGAGAATATATAAATATTTTGAACACCCTTTGCCCCTCAATTCGAGAGACAAATTTCTAAGTAAACCTCTTTTTTTTATCATTTTTTAAATAATCATTTTTTCTAAATTAACACCACATCATCAATATTCCAATTGCAGGAAAAAAATTTCCATTCACCAAAAGGTAAATTAGGTGAACGTTTTTTTTTATTATTTTTTTGTAGTGTTGTTTTCTTATTTGTAGGTACAATGTCTTTCAGCATTAGTACAAGGACACATGATGTCTTTGGACTTTTGTTGTTGTGACGTTTCCCGGCCCAAGGACACATGATGTCATTCCCATTTGGGCTCCTTTAGTGTTGCCACGTCTTTCAGCATTAGTACAAGGACACATGATGTCTTTGGACTTTTGTTGTTATGACGTCCCCTGGTCCAAGGACACATGATGTCATTCCCACTTGGGCTCCTTTACTTCTGCAACGTCTTTCAGCATTAGTACAAGGACATATGACGTCTTTGGACTTTTGTTGTTATGACATTCCCTGACCCAAGGACACATGATGTCATTCCCACTTGGGCTCCTTTACCACTGTAACGTCTTTCAGCATTAGTACAAGGACATATGACGTCTTTGGACTTTTGTTGATATGATGTCTCGCAACATTAGTCCTAGGAGATTTTCGTTAATGCATTATTATTATTTTTTTAAACTTATCTTCGTAAAAATCTTATTCTTTTGACTTGTGCTAACTCTCATCTATTTAAATTTTGTAGAGTCATGGTGTGTTTTGCAGAACACATTGTCTCCGATAAGACGTACCTCGTTCTCTTGAAAGACAACAATCAACCCATAAGAAGCGGGCTCAGCTTCTTCGTTGAAGAGTCTAAAAACGGCCGTCTTGCAGCCCAATGGCCCCCACCACTAAATCTGCATACCATTTCTGATTGGTCCGTAGAGAGACCTCTGGACCAAGATTCCGAGGCTTGGTTTCTAGAATCTTCAATCCATACACAAAATCCTAGTCGACATCCAGAGGTGACGTTAGGACGCCAAATAATTGATGGATTAGTTTGTTGGGAATCCGCATTGAAAATTACATTCGAATTTCTTTTTATTCCTCGCTATTGGGAGTGGCTAGAATTCGTCATTGGTCGGAATGAAGAGGTGCTACAAACTGCTCGTTTATTGGATGCAGTGGTGGCTTCCCTTTACACTTATGATCGAAACAACGATCTAGTTCAGGCTTTTTGTGAAGCTTGGTGTCCTGCAACCAATACACTTCACACTCGTACGGGAGAACTTTCAATTTTCTTATGGGATCTTTGGACATTTGGGGGTTTGCCCATCAAAGGTAGATTTTATGAGGAAGTTATCCCTAGTTTTAAAGAGTTAACTGGATCAAACAACCAGGCGAAGTATCTTCCAAAAATTTGCGAACACTTTTTCCATGCATTCTACTTGCTTAGCGCTTCAAGAACTGACCATTCCCATGTTCCAATCAGCTCCTGGACTTCCTTTTGGTTCAAAGGTGAACAGAGGTATGCAAAGCCTCCTCAACGGAGACCCAAGAAGACCTCTCGCCCTAGCACGACTCATAACCCAGACATCACAAATATTAAGCGTCACGAGTGGTCAGATGAGGAGAACAGCTTGTTTCACGAGTTAAAGATTGATATAAAACACAGGGACTAGACATACTTGGCGGCCTTTTTATCTTATTGGCTCTGCGCCTTTGTGTTTCCCCAAGGGATTGCTAACCACATTCGTCCCAGTGTTTTTAAAGTTACCAGCTTAATGGCCGAGGGGAAAACTTTCAGTCTTGCAATCCCCGTCCTTGCCAACATCTACCACGGGTTAGGCAAAGTTTCTAATGCTTCTAGTTCAGTTGGACGCATAGATGCTTCTCTCCCTGTGCATTACATTTTTGGTTGGCTCGCCCATTATTTTGGTACCAACTATAAAACTCCAGTGAAAGTTCGAGGTCCTAGCATGGTTGACTTTTCCGGCGAAGGTGGAGCTATATATTTTGATGAGTTCGAGGCTGGCGAATTAATCCATGGGGGTGCATCCATATCATGGCACACGAACCTTAGTAGGAACAAAATGAAATCATAAAGCATGAAAAGATTACGAAATTTATACCTTCTTCCTATTTCTCGAGTCTTCGCTCATGTTATTTGTCAGCGCGATGCAAAGATTCACCAGTTATCGAACCCTACAACCCATATCGATTTGGCCGCCAGTTTGGGTTCTATCAAGACATACCTAATGATTAGGAGAAGTTTTGCCCCTAGTCACCTTGGAAAACATTTTACACCACTAGCGAGTTTGCACGCGAACTAATGCGGAATTTCAAGTATTTCTTCCAGCTCATACATTGAATCCTCAAGACCATATCACCTCACGTTATCGAAGTTAGTGGTCTGAAAAGTATGATAATTACCTAGAGGAAGGCATAAGTAAGTTGGTTGACAGTACCATTCCCTCTCGAACCCAGCCTAAGCTACCTAAAAAAGACGACTCTAAATTTGGGGGAAAAGAACTCCGTCTGCTCAAGGTTGCCAGATCTCCAGACAATTCAACTGAAGAAGAGAGTCAAAACAACACTGGAGATCGACACACTGGAACCAAAAGGCCCAAGAAAGCTTCTGATCCCGATGACAAGTCCCTCAAGAGTGTTTCTAATGCTTCACAGGCTCCTAACGACATTGAGACTTTGGTTGAACAACCCTTTTTTTTTTCCTTTTTTTGTTTTTTTGTTTTTTTTTTAATTTAAACCCTCTTTTATTTTTCTTTTGCAGCTTCCTTTAAATGATTGTGTTCAAGAAGAGGAATAATGTTCGAGTGAGCAATCTTTGACAAGTCCTGATGTTTTTGCTTCTTCCGTGAAAAACTTTGGAAGCTCTCATGCATCTTCGAGCAAACAAGTCGTGAATTCATCTTCTCGTTCTACTGAGAAAGTTCCTCAACATACTCAAGAGAAAGTGATTGCCCCAGTCTTTGAGGCTTCTCAGTTCTATGCTGATAATGTAATTTCCAACTTCTGACGACAGGCTGCTTTATCTATATGGACAAGCATACAAGAGAAGATTGTACGCACTCCTTTTGAAGATGTTGCTAGCCTTGAGCACCTTGAACAAGAAACTCACAAGATCTTCGATGCAATGGCAGAGACCACTACGAACAACTTGAAACCTCTGCAAGAATTTGTAGGCAGCTGCTTCAAGAAAGTGCGAGAATACAATGGATTACAATCTTCGCTCTCTACTCACCTGACCCCATCGAGTAAGGATAGTCAGTTGGAGGCAAAGAAGCTCTACTTAGAGAAGGCTTTGTCTATCGAAAGTTGTGTTGTTGAGGAGAAAGATGCACTTCAGAAATAACTTGCTTGCTCTGTCTCAGAGGTTGCAGATCTAAAGACCAAGGTTGCAGAACTAGAGGCCAAGTTAACAACTGCAGAGGCTAAGTTAGAAAGCCTTTCCAATTCGGTCTCTGAAAAGGAAAAGGACTTAGCTCATGAAAAACTTGTTGTTTCGCAAATACGTGAGGAGATTAGTGACATCAAGTGTGCCCCCACCATCAACGCTTCAGACGTTCGCACCCTAGCAACACTTCGCGGACTTTTCGAGACTACTTGTGACGAGCTGAAAGCACTTCAATGGAATCCTTAA

mRNA sequence

ATGGATTCTTGGAGCTTGAAGTCTTCCAGTCTTGAAGGAGTCTTCAGTCTTCAAGAACTCTCTCAGCAATCAAGAGTCATGGTGTGTTTTGCAGAACACATTGTCTCCGATAAGACGTACCTCGTTCTCTTGAAAGACAACAATCAACCCATAAGAAGCGGGCTCAGCTTCTTCGTTGAAGAGTCTAAAAACGGCCGTCTTGCAGCCCAATGGCCCCCACCACTAAATCTGCATACCATTTCTGATTGGTCCGTAGAGAGACCTCTGGACCAAGATTCCGAGGCTTGTCTTGCAATCCCCGTCCTTGCCAACATCTACCACGGGTTAGGCAAAGTTTCTAATGCTTCTAGTTCAGTTGGACGCATAGATGCTTCTCTCCCTGTGCATTACATTTTTGGTTGGCTCGCCCATTATTTTGGTACCAACTATAAAACTCCAGTGAAAGTTCGAGGTCCTAGCATGGTTGACTTTTCCGGCGAAGGCATAAGTAAGTTGGTTGACAGTACCATTCCCTCTCGAACCCAGCCTAAGCTACCTAAAAAAGACGACTCTAAATTTGGGGGAAAAGAACTCCGTCTGCTCAAGGTTGCCAGATCTCCAGACAATTCAACTGAAGAAGAGAGTCAAAACAACACTGGAGATCGACACACTGGAACCAAAAGGCCCAAGAAAGCTTCTGATCCCGATGACAAGTCCCTCAAGAGTGTTTCTAATGCTTCACAGGCTCCTAACGACATTGAGACTTTGGCTGCTTTATCTATATGGACAAGCATACAAGAGAAGATTGTACGCACTCCTTTTGAAGATGTTGCTAGCCTTGAGCACCTTGAACAAGAAACTCACAAGATCTTCGATGCAATGGCAGAGACCACTACGAACAACTTGAAACCTCTGCAAGAATTTGTAGGCAGCTGCTTCAAGAAAGTGCGAGAATACAATGGATTACAATCTTCGCTCTCTACTCACCTGACCCCATCGAAGGTTGCAGATCTAAAGACCAAGGTTGCAGAACTAGAGGCCAAGTTAACAACTGCAGAGGCTAAGTTAGAAAGCCTTTCCAATTCGGTCTCTGAAAAGGAAAAGGACTTAGCTCATGAAAAACTTGTTGTTTCGCAAATACGTGAGGAGATTAGTGACATCAAGTGTGCCCCCACCATCAACGCTTCAGACGTTCGCACCCTAGCAACACTTCGCGGACTTTTCGAGACTACTTGTGACGAGCTGAAAGCACTTCAATGGAATCCTTAA

Coding sequence (CDS)

ATGGATTCTTGGAGCTTGAAGTCTTCCAGTCTTGAAGGAGTCTTCAGTCTTCAAGAACTCTCTCAGCAATCAAGAGTCATGGTGTGTTTTGCAGAACACATTGTCTCCGATAAGACGTACCTCGTTCTCTTGAAAGACAACAATCAACCCATAAGAAGCGGGCTCAGCTTCTTCGTTGAAGAGTCTAAAAACGGCCGTCTTGCAGCCCAATGGCCCCCACCACTAAATCTGCATACCATTTCTGATTGGTCCGTAGAGAGACCTCTGGACCAAGATTCCGAGGCTTGTCTTGCAATCCCCGTCCTTGCCAACATCTACCACGGGTTAGGCAAAGTTTCTAATGCTTCTAGTTCAGTTGGACGCATAGATGCTTCTCTCCCTGTGCATTACATTTTTGGTTGGCTCGCCCATTATTTTGGTACCAACTATAAAACTCCAGTGAAAGTTCGAGGTCCTAGCATGGTTGACTTTTCCGGCGAAGGCATAAGTAAGTTGGTTGACAGTACCATTCCCTCTCGAACCCAGCCTAAGCTACCTAAAAAAGACGACTCTAAATTTGGGGGAAAAGAACTCCGTCTGCTCAAGGTTGCCAGATCTCCAGACAATTCAACTGAAGAAGAGAGTCAAAACAACACTGGAGATCGACACACTGGAACCAAAAGGCCCAAGAAAGCTTCTGATCCCGATGACAAGTCCCTCAAGAGTGTTTCTAATGCTTCACAGGCTCCTAACGACATTGAGACTTTGGCTGCTTTATCTATATGGACAAGCATACAAGAGAAGATTGTACGCACTCCTTTTGAAGATGTTGCTAGCCTTGAGCACCTTGAACAAGAAACTCACAAGATCTTCGATGCAATGGCAGAGACCACTACGAACAACTTGAAACCTCTGCAAGAATTTGTAGGCAGCTGCTTCAAGAAAGTGCGAGAATACAATGGATTACAATCTTCGCTCTCTACTCACCTGACCCCATCGAAGGTTGCAGATCTAAAGACCAAGGTTGCAGAACTAGAGGCCAAGTTAACAACTGCAGAGGCTAAGTTAGAAAGCCTTTCCAATTCGGTCTCTGAAAAGGAAAAGGACTTAGCTCATGAAAAACTTGTTGTTTCGCAAATACGTGAGGAGATTAGTGACATCAAGTGTGCCCCCACCATCAACGCTTCAGACGTTCGCACCCTAGCAACACTTCGCGGACTTTTCGAGACTACTTGTGACGAGCTGAAAGCACTTCAATGGAATCCTTAA

Protein sequence

MDSWSLKSSSLEGVFSLQELSQQSRVMVCFAEHIVSDKTYLVLLKDNNQPIRSGLSFFVEESKNGRLAAQWPPPLNLHTISDWSVERPLDQDSEACLAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYFGTNYKTPVKVRGPSMVDFSGEGISKLVDSTIPSRTQPKLPKKDDSKFGGKELRLLKVARSPDNSTEEESQNNTGDRHTGTKRPKKASDPDDKSLKSVSNASQAPNDIETLAALSIWTSIQEKIVRTPFEDVASLEHLEQETHKIFDAMAETTTNNLKPLQEFVGSCFKKVREYNGLQSSLSTHLTPSKVADLKTKVAELEAKLTTAEAKLESLSNSVSEKEKDLAHEKLVVSQIREEISDIKCAPTINASDVRTLATLRGLFETTCDELKALQWNP

Homology

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BLAST of Spg028201 vs. NCBI nr
Match: KAA0050333.1 (hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 9.9e-28
Identity = 123/462 (26.62%), Postives = 186/462 (40.26%), Query Frame = 0


Query: 97  LAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYFGTNYKTPVKVRGPSMVD 156
           LA+PVLANIYHGLG ++ AS+ +GR+D   P+HY+ GWLAHYFGT+Y  P +VRGP M +
Sbjct: 210 LAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTN 269

Query: 157 FSGEGIS-------------------------------------------KLVDSTIPSR 216
           FSGEG S                                            LV S IP  
Sbjct: 270 FSGEGGSIYFGEYEARELIHNGARIQWHANLQNRNKHERMHGTYFEDNRHHLVSSAIPPP 329

Query: 217 TQPKLPKKDDSKFGGKELRLLKVARSP---DNSTEEESQNNTGDRHTGTKRPKK-----A 276
           +QP+L K   S  GGKE+RL++ A +P   +   E ES ++  DRH   KRP K      
Sbjct: 330 SQPRLLKNRGSNLGGKEIRLVE-AMAPNLEEEVKEHESDSSKSDRH--WKRPLKKAKVSG 389

Query: 277 SDPDDKSLKSVS---------------------------------------NASQAP--- 336
             PD + L ++                                          S+ P   
Sbjct: 390 DHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPESDESLTGPHAVDSAFEEVGTSKTPVNK 449

Query: 337 ------------------------NDIE---------------------------TLAAL 396
                                    D+E                              AL
Sbjct: 450 PTEQSLRPSALLEEIRRGKMTVGGKDLEIPSSKEGACPKASLQKWVGEKVVSNFFQKTAL 509

Query: 397 SIWTSIQEKIVRTPFEDVASLEHLEQETHKIFDAMAETTTNNLKPLQEFVGSCFKKVREY 414
            +W  IQ+KI+RTPFE    +  L  E   +   + +  T+ L  L+E++ S  K+V  +
Sbjct: 510 CMWEDIQDKIMRTPFE---YIPRLRPEIATVLSGIEKIHTDGLTSLEEYLNSYLKRVDNF 569

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BLAST of Spg028201 vs. NCBI nr
Match: KAA0057699.1 (hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa] >TYK27485.1 hypothetical protein E5676_scaffold970G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 4.6e-25
Identity = 110/361 (30.47%), Postives = 177/361 (49.03%), Query Frame = 0


Query: 97  LAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYFGTNYKTPVKVRGPSM-- 156
           LAIPVLANIYHGLG ++ AS+ +GR+D   P+ Y+ GWLAHYFGT+Y  P +VRGP    
Sbjct: 150 LAIPVLANIYHGLGLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPCKHV 209

Query: 157 ------------VDFSGEGISKLVDSTIPSRTQPKLPKKDDSKFGGKELRLLKVARSPD- 216
                       + +  E    LV S IP  +QP+LPK   S  GGKE+RL++ A +P+ 
Sbjct: 210 TQRFTDWWTMRHMTYFEENRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVE-AMAPNL 269

Query: 217 ----NSTEEESQNNTGDRHTGTKRPKK-----ASDPDDKSLKS-----VSNASQAPNDIE 276
               N  ++ES ++  DRH   KRP K       +PD + L +     V   S   + +E
Sbjct: 270 EEEVNEHKDESDSSKSDRH--WKRPLKKAKVSGDNPDGRGLSALIVPDVPPLSPLNDHLE 329

Query: 277 TLAALSIWTSIQ-EKIVRTPFEDV-ASLEHLEQETHKIF--DAMAETTT--------NNL 336
            L AL    S+     V + FE+V  S   + + T +     A+ E            +L
Sbjct: 330 GLIALDSDESLMGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSALLEEIRRGKMIVGGKDL 389

Query: 337 KPLQEFVGSCFK-KVREYNGLQSSLSTHLTP-SKVADLKTKVAELEAKLT-TAEAKLESL 396
           +      G+C K  +++ +   + L  +  P  K   L  K + ++  LT   E + ++ 
Sbjct: 390 ESPSSKEGACPKSSLQKVSSAHAPLKFYELPLDKARQLNEKTSAIKEALTLVKELRGDAK 449

Query: 397 SNSVSEKEKDLAHEKLVVSQIREEISDIKCAPTINASDVRTLATLRGLFETTCDELKALQ 414
                 + K +  ++L ++++++E++ ++  P I    +  LAT+R   E T +E K  +
Sbjct: 450 LFRKEPRTKAIDQQELEIAKLQDEVNTLENTPAITEEAIEALATVRKSMEATREEFKNFK 507

[Close]

BLAST of Spg028201 vs. NCBI nr
Match: KAA0047641.1 (uncharacterized protein E6C27_scaffold115G001240 [Cucumis melo var. makuwa] >TYK08299.1 uncharacterized protein E5676_scaffold648G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-21
Identity = 120/473 (25.37%), Postives = 187/473 (39.53%), Query Frame = 0


Query: 27  MVCFAEHIVSDKTYLVLLKDNNQPIRSGLSFFVEESKNGRLAAQWPPPLNLHTISDWSVE 86
           MV F E+  S +  L++LKD NQ + SG+   V E     +     P  N   +  WS E
Sbjct: 305 MVYFVEYSDSTERCLIILKDENQSLESGVILLVREEAFENITDSQIPKDNFILLPKWSKE 364

Query: 87  RP-------LDQDSEACLAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYF 146
                    + +     L IPVLANIY  L ++ +++SS+G  +A  P+HY+ GWLA YF
Sbjct: 365 HSVFKVASLMAEGYTFSLVIPVLANIYSSLRQIHDSTSSLGHSNACFPIHYVHGWLALYF 424

Query: 147 GTNYKTPVKVRGPSMVDFSG---------------------------------------- 206
            T+YK P  +RGP MV+FS                                         
Sbjct: 425 NTHYKAPTSLRGPCMVEFSDEVDPLWLLNLIVLIALVGNLDFIKSWYDLDEKIPKADLTN 484

Query: 207 -------------------------------------------EGISKLVDSTIPSRTQP 266
                                                      EG   LV ++ PS  + 
Sbjct: 485 ARYHWMIYVHENTLSQVYLHVPALHPSNHITLHYKEQLVEKTEEGTKCLVATSTPS-AKF 544

Query: 267 KLPKKDDSKFGGKELRLLKVARSPDNSTEEESQNNTGDRH-TGTKRPKKASDPDDKSLKS 326
           K P +  +    K+L +L   +     T E+SQ+N  DRH    KRPKK S  D+K    
Sbjct: 545 KFPTRSGADNVRKDLHILTTGKRLSTHT-EDSQSNNDDRHWKRPKRPKKQSIDDEKPPID 604

Query: 327 VSNASQAPNDIETLAALSIWT-SIQEKIVRTPFEDVASLEHLEQE--THKIFDAMAETTT 386
           V +  Q  +    +++L      I+     T   +V S     +    + +FD   +T  
Sbjct: 605 VPDVPQFLDITSPMSSLGDHVLQIEGTTKSTASPEVLSTSDNSKTPIDNLVFDLRRKTAI 664

Query: 387 NNLKPL-QEFVGSCFKKVREYNGLQSSLSTHLTPSKVADLKTKVAELEAKLTTAEAKLES 405
              + L Q+ + + F++    N  +    T     ++  L  K A+LEAKL     +   
Sbjct: 665 TLWESLRQKIICTPFERTLRLNENRILEETSTVQHRLTRLSAKEAKLEAKLKVVRIE--- 724

[Close]

BLAST of Spg028201 vs. NCBI nr
Match: KAA0025448.1 (hypothetical protein E6C27_scaffold417G00440 [Cucumis melo var. makuwa] >TYK04734.1 hypothetical protein E5676_scaffold68G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 5.3e-21
Identity = 67/173 (38.73%), Postives = 98/173 (56.65%), Query Frame = 0


Query: 97  LAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYFGTNYKTPVKVRGPSMVD 156
           LA+P+LAN+YHGLG ++ AS+ +GR+D   P++Y+ GWLAHYFGT+Y  P +V+GP M +
Sbjct: 198 LAVPILANMYHGLGLITKASNPIGRMDFHFPMNYVHGWLAHYFGTHYPLPTEVQGPKMTN 257

Query: 157 FSGEGISK------------------------LVDSTIPSRTQPKLPKKDDSKFGGKELR 216
           FSGE   K                        LV S I   +QP+LPK   S  GGKE+R
Sbjct: 258 FSGEEPCKHVTQRFRDWWTTRHRTYFEDNRHHLVSSAIHPPSQPRLPKNQGSNLGGKEIR 317

Query: 217 LLK-VARSPDNSTEE---ESQNNTGDRHTGTKRPKK-----ASDPDDKSLKSV 237
           L++ +A + +   +E   ES ++  DRH   KRP K       +P+ + L ++
Sbjct: 318 LVETMAHNLEEEVKEHKDESDSSKSDRH--WKRPLKKAKVSGDNPEGRGLSAL 368

[Close]

BLAST of Spg028201 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 7.6e-20
Identity = 131/581 (22.55%), Postives = 194/581 (33.39%), Query Frame = 0


Query: 97  LAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYFGTNYKTPVKVRGPSMVD 156
           LA+PVLANIYHGLG ++ AS+ +GR+D   P+HY+ GWLAHYFGT+Y  P +VRGP M +
Sbjct: 57  LAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTN 116

Query: 157 FSGEGIS----------------------------------------------------- 216
           FSGEG S                                                     
Sbjct: 117 FSGEGESIYFGEYEARELIHNGARIQWHASLQNRSKHERMDLPNDIGGMPPAITLDNILY 176

Query: 217 ------------------------------------------------KLVDSTIPSRTQ 276
                                                            LV S IP  +Q
Sbjct: 177 HWRICTRRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQ 236

Query: 277 PKLPKKDDSKFGGKELRLLKVARSPDNSTE-----EESQNNTGDRH-------------- 336
           P+LPK   S  GGKE+RL++ A +P+   E     +ES ++  DRH              
Sbjct: 237 PRLPKNRGSNLGGKEIRLVE-AMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDH 296

Query: 337 ------------------------------------------------TGTKRP------ 396
                                                            GT R       
Sbjct: 297 PDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTPVNKPT 356

Query: 397 ----------------------KKASDPDDK-------SLKSVSNA------SQAPNDIE 414
                                 K    P  K       SL+ VS+A      S+ P  + 
Sbjct: 357 EQSLRPSALLEEIRRGKMTVGGKDLESPSSKEGACPKASLQKVSSAHAPLTFSELPLGVS 416

[Close]

BLAST of Spg028201 vs. ExPASy TrEMBL
Match: A0A5A7U349 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00590 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.8e-28
Identity = 123/462 (26.62%), Postives = 186/462 (40.26%), Query Frame = 0


Query: 97  LAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYFGTNYKTPVKVRGPSMVD 156
           LA+PVLANIYHGLG ++ AS+ +GR+D   P+HY+ GWLAHYFGT+Y  P +VRGP M +
Sbjct: 210 LAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTN 269

Query: 157 FSGEGIS-------------------------------------------KLVDSTIPSR 216
           FSGEG S                                            LV S IP  
Sbjct: 270 FSGEGGSIYFGEYEARELIHNGARIQWHANLQNRNKHERMHGTYFEDNRHHLVSSAIPPP 329

Query: 217 TQPKLPKKDDSKFGGKELRLLKVARSP---DNSTEEESQNNTGDRHTGTKRPKK-----A 276
           +QP+L K   S  GGKE+RL++ A +P   +   E ES ++  DRH   KRP K      
Sbjct: 330 SQPRLLKNRGSNLGGKEIRLVE-AMAPNLEEEVKEHESDSSKSDRH--WKRPLKKAKVSG 389

Query: 277 SDPDDKSLKSVS---------------------------------------NASQAP--- 336
             PD + L ++                                          S+ P   
Sbjct: 390 DHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPESDESLTGPHAVDSAFEEVGTSKTPVNK 449

Query: 337 ------------------------NDIE---------------------------TLAAL 396
                                    D+E                              AL
Sbjct: 450 PTEQSLRPSALLEEIRRGKMTVGGKDLEIPSSKEGACPKASLQKWVGEKVVSNFFQKTAL 509

Query: 397 SIWTSIQEKIVRTPFEDVASLEHLEQETHKIFDAMAETTTNNLKPLQEFVGSCFKKVREY 414
            +W  IQ+KI+RTPFE    +  L  E   +   + +  T+ L  L+E++ S  K+V  +
Sbjct: 510 CMWEDIQDKIMRTPFE---YIPRLRPEIATVLSGIEKIHTDGLTSLEEYLNSYLKRVDNF 569

[Close]

BLAST of Spg028201 vs. ExPASy TrEMBL
Match: A0A5A7UVX0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00390 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-25
Identity = 110/361 (30.47%), Postives = 177/361 (49.03%), Query Frame = 0


Query: 97  LAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYFGTNYKTPVKVRGPSM-- 156
           LAIPVLANIYHGLG ++ AS+ +GR+D   P+ Y+ GWLAHYFGT+Y  P +VRGP    
Sbjct: 150 LAIPVLANIYHGLGLITKASNLIGRMDFHFPMPYVHGWLAHYFGTHYPLPTEVRGPCKHV 209

Query: 157 ------------VDFSGEGISKLVDSTIPSRTQPKLPKKDDSKFGGKELRLLKVARSPD- 216
                       + +  E    LV S IP  +QP+LPK   S  GGKE+RL++ A +P+ 
Sbjct: 210 TQRFTDWWTMRHMTYFEENRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVE-AMAPNL 269

Query: 217 ----NSTEEESQNNTGDRHTGTKRPKK-----ASDPDDKSLKS-----VSNASQAPNDIE 276
               N  ++ES ++  DRH   KRP K       +PD + L +     V   S   + +E
Sbjct: 270 EEEVNEHKDESDSSKSDRH--WKRPLKKAKVSGDNPDGRGLSALIVPDVPPLSPLNDHLE 329

Query: 277 TLAALSIWTSIQ-EKIVRTPFEDV-ASLEHLEQETHKIF--DAMAETTT--------NNL 336
            L AL    S+     V + FE+V  S   + + T +     A+ E            +L
Sbjct: 330 GLIALDSDESLMGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSALLEEIRRGKMIVGGKDL 389

Query: 337 KPLQEFVGSCFK-KVREYNGLQSSLSTHLTP-SKVADLKTKVAELEAKLT-TAEAKLESL 396
           +      G+C K  +++ +   + L  +  P  K   L  K + ++  LT   E + ++ 
Sbjct: 390 ESPSSKEGACPKSSLQKVSSAHAPLKFYELPLDKARQLNEKTSAIKEALTLVKELRGDAK 449

Query: 397 SNSVSEKEKDLAHEKLVVSQIREEISDIKCAPTINASDVRTLATLRGLFETTCDELKALQ 414
                 + K +  ++L ++++++E++ ++  P I    +  LAT+R   E T +E K  +
Sbjct: 450 LFRKEPRTKAIDQQELEIAKLQDEVNTLENTPAITEEAIEALATVRKSMEATREEFKNFK 507

[Close]

BLAST of Spg028201 vs. ExPASy TrEMBL
Match: A0A5A7U231 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00820 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.2e-22
Identity = 120/473 (25.37%), Postives = 187/473 (39.53%), Query Frame = 0


Query: 27  MVCFAEHIVSDKTYLVLLKDNNQPIRSGLSFFVEESKNGRLAAQWPPPLNLHTISDWSVE 86
           MV F E+  S +  L++LKD NQ + SG+   V E     +     P  N   +  WS E
Sbjct: 305 MVYFVEYSDSTERCLIILKDENQSLESGVILLVREEAFENITDSQIPKDNFILLPKWSKE 364

Query: 87  RP-------LDQDSEACLAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYF 146
                    + +     L IPVLANIY  L ++ +++SS+G  +A  P+HY+ GWLA YF
Sbjct: 365 HSVFKVASLMAEGYTFSLVIPVLANIYSSLRQIHDSTSSLGHSNACFPIHYVHGWLALYF 424

Query: 147 GTNYKTPVKVRGPSMVDFSG---------------------------------------- 206
            T+YK P  +RGP MV+FS                                         
Sbjct: 425 NTHYKAPTSLRGPCMVEFSDEVDPLWLLNLIVLIALVGNLDFIKSWYDLDEKIPKADLTN 484

Query: 207 -------------------------------------------EGISKLVDSTIPSRTQP 266
                                                      EG   LV ++ PS  + 
Sbjct: 485 ARYHWMIYVHENTLSQVYLHVPALHPSNHITLHYKEQLVEKTEEGTKCLVATSTPS-AKF 544

Query: 267 KLPKKDDSKFGGKELRLLKVARSPDNSTEEESQNNTGDRH-TGTKRPKKASDPDDKSLKS 326
           K P +  +    K+L +L   +     T E+SQ+N  DRH    KRPKK S  D+K    
Sbjct: 545 KFPTRSGADNVRKDLHILTTGKRLSTHT-EDSQSNNDDRHWKRPKRPKKQSIDDEKPPID 604

Query: 327 VSNASQAPNDIETLAALSIWT-SIQEKIVRTPFEDVASLEHLEQE--THKIFDAMAETTT 386
           V +  Q  +    +++L      I+     T   +V S     +    + +FD   +T  
Sbjct: 605 VPDVPQFLDITSPMSSLGDHVLQIEGTTKSTASPEVLSTSDNSKTPIDNLVFDLRRKTAI 664

Query: 387 NNLKPL-QEFVGSCFKKVREYNGLQSSLSTHLTPSKVADLKTKVAELEAKLTTAEAKLES 405
              + L Q+ + + F++    N  +    T     ++  L  K A+LEAKL     +   
Sbjct: 665 TLWESLRQKIICTPFERTLRLNENRILEETSTVQHRLTRLSAKEAKLEAKLKVVRIE--- 724

[Close]

BLAST of Spg028201 vs. ExPASy TrEMBL
Match: A0A5D3C0F3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00270 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-21
Identity = 67/173 (38.73%), Postives = 98/173 (56.65%), Query Frame = 0


Query: 97  LAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYFGTNYKTPVKVRGPSMVD 156
           LA+P+LAN+YHGLG ++ AS+ +GR+D   P++Y+ GWLAHYFGT+Y  P +V+GP M +
Sbjct: 198 LAVPILANMYHGLGLITKASNPIGRMDFHFPMNYVHGWLAHYFGTHYPLPTEVQGPKMTN 257

Query: 157 FSGEGISK------------------------LVDSTIPSRTQPKLPKKDDSKFGGKELR 216
           FSGE   K                        LV S I   +QP+LPK   S  GGKE+R
Sbjct: 258 FSGEEPCKHVTQRFRDWWTTRHRTYFEDNRHHLVSSAIHPPSQPRLPKNQGSNLGGKEIR 317

Query: 217 LLK-VARSPDNSTEE---ESQNNTGDRHTGTKRPKK-----ASDPDDKSLKSV 237
           L++ +A + +   +E   ES ++  DRH   KRP K       +P+ + L ++
Sbjct: 318 LVETMAHNLEEEVKEHKDESDSSKSDRH--WKRPLKKAKVSGDNPEGRGLSAL 368

[Close]

BLAST of Spg028201 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.7e-20
Identity = 131/581 (22.55%), Postives = 194/581 (33.39%), Query Frame = 0


Query: 97  LAIPVLANIYHGLGKVSNASSSVGRIDASLPVHYIFGWLAHYFGTNYKTPVKVRGPSMVD 156
           LA+PVLANIYHGLG ++ AS+ +GR+D   P+HY+ GWLAHYFGT+Y  P +VRGP M +
Sbjct: 57  LAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTN 116

Query: 157 FSGEGIS----------------------------------------------------- 216
           FSGEG S                                                     
Sbjct: 117 FSGEGESIYFGEYEARELIHNGARIQWHASLQNRSKHERMDLPNDIGGMPPAITLDNILY 176

Query: 217 ------------------------------------------------KLVDSTIPSRTQ 276
                                                            LV S IP  +Q
Sbjct: 177 HWRICTRRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQ 236

Query: 277 PKLPKKDDSKFGGKELRLLKVARSPDNSTE-----EESQNNTGDRH-------------- 336
           P+LPK   S  GGKE+RL++ A +P+   E     +ES ++  DRH              
Sbjct: 237 PRLPKNRGSNLGGKEIRLVE-AMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDH 296

Query: 337 ------------------------------------------------TGTKRP------ 396
                                                            GT R       
Sbjct: 297 PDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTPVNKPT 356

Query: 397 ----------------------KKASDPDDK-------SLKSVSNA------SQAPNDIE 414
                                 K    P  K       SL+ VS+A      S+ P  + 
Sbjct: 357 EQSLRPSALLEEIRRGKMTVGGKDLESPSSKEGACPKASLQKVSSAHAPLTFSELPLGVS 416

The following BLAST results are available for this feature:

BLAST of Spg028201 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050333.1	9.9e-28	26.62	hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa]	[more]
KAA0057699.1	4.6e-25	30.47	hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa] >TYK2748...	[more]
KAA0047641.1	1.1e-21	25.37	uncharacterized protein E6C27_scaffold115G001240 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0025448.1	5.3e-21	38.73	hypothetical protein E6C27_scaffold417G00440 [Cucumis melo var. makuwa] >TYK0473...	[more]
KAA0031751.1	7.6e-20	22.55	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]

BLAST of Spg028201 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U349	4.8e-28	26.62	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVX0	2.2e-25	30.47	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U231	5.2e-22	25.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C0F3	2.6e-21	38.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SQC9	3.7e-20	22.55	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Spg028201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 328..362
None	No IPR available	GENE3D	1.20.5.340		coord: 312..397 e-value: 3.5E-5 score: 25.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..231
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 97..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028201.1	Spg028201.1	mRNA