Spg028180 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028180
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold2: 45802607 .. 45806778 (-)
RNA-Seq ExpressionSpg028180
SyntenySpg028180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTATTAAAGAAAGATTAGACCGGTTCCTATGTAATTCAGAATTCGACTCCCTGTTTAATTTCATAAAAGCTAGTAATTTGGACTGGATGTTTTCTGATCATAAACCCATTGAGATATGTATGGAGAGGAGAAAACCTAAAACTATGAGTAGAAAGGACTACCCTTTCAAATTTGAAGAGCTTTGGACGACCTATGATGAATGCGAGGACCTAATTGTTAATAATGGTACATGGAAAGGTAATGATTTTCCTTTTGCTTCTTTGTCTGGAAATTTACAGAACTGCTCTTATGCACTTTCTAAATGGGGTAAAGAAATTAACTCTTTTAGGAAAAATAGGATAGCTGATTGCAAAAGGGACCTTAAAATTGCTTACAATAATCTCTCCAATACCAATTTTGATATAATTCATAGCATAGAATTTGAACTGGATAATTTGTTAGAGGAAGAAGAGATATATTGGAAACAAAAGTCTAGGGAAAATTGGTTAAAATGGGGGGATAAGAATTCTAGATGGTTCCATAAAAAGGCCTCCATTAGGAAAAAGACCAATGAAATTTCTGGAATCTATGATCTTAATGGTGTATGGACAGAAGACCTCCCAAAAATTCAAGAAACTTTTATCTCATACTTTGAAAATCTTTTCAGATCCTCTAACCCAGAACAAACTGATATTAACCTAGCCTTAGATGGAATAATGCCTAAAGTAACCCAAACTATGAACAATAAGCTTCTGGCCCCATTTTCAAAAGCTGAAATAGAAAGGGCAATTAACCAAATGTTTCCTACTAAAGCCCCGGGACCCGACGGCTACCCAGCAATTTTTTACCAAAAATATTGGCACATAGTAGGTGAAAAAACTATAACAGAATGCTTAGAAATACTTAATGGTCAGGGCAGTATCCAAGGCTGGAATAACACAAATATAGTTCTAATTCCCAAAGTAGCCAGCCCTAAGGAAGTGGGGGATTTTAGGCCAATTAGCCTTTGTAATGTTAATTACAAAATAATAACAAAAACTATTGCTAATAGGCTAAAAAGTGTCCTTAAGGAGATTATCTCAGATTCTCAATCAGCTTTCATCGAAGGCAAACTTATAACAGATAATATTATAATAGGACATGAGTGTATAAACGCTATTAGAAACAGTAGATTTAACTGTGGAAATATGGTAGCCCTTAAACTCGACCTTAGTAAAGCATATGATCGCGTAGAATGGTCTTATCTTAAAGCTATAATGTTGAGATTAGGTTTCAATTCTAGATGGGTTGATTTAATAATGGGTTGCATCTCGTCGGCTAACTTTTCTATCTTATTCAATGGAGAGAAAACAGGTAGCTTTAATTCGGGTAGGGGGCTTCGGCAAGGGGATCCTCTTTCCCCCTATCTTTTCTTACTCATTACAGAGGGCCTTTCCCATTTAATTAATTTGGCAACCACCAAAGGTAGTCTAACCGGTTTATCTGTTTCTAATGGTCCTATAATAAATCACCTTCTTTTTGCAGACGATAGTTTGATTTTTTGCAAGGCTAAAGATAGAGAACTGCTGGAAGTTAAGAGATTACTACAAATATATGAAATTGCCTCAGGAGAATCAATAAATTTCTCTAAGTCTGCAGTATTATTTTCTTCCAGGATAAATAACAATAGAAAGGATCACCTTAGTTCTATAATAGGGGTTAGAAATGTTAGCAACTTTGGTAAATACCTTGGAATACCTTCGGTATTATCTAGGAACAAATCTAGGGATTTTAGTTACATATTAGACAAAGTTTGGAATTCAGTTCAAGGATGGAAAAAAACATTTTTTTCAACAGCAGGGAAAGAAGTTCTAATTAAGAGTATAGGCCAAGCCATTCCCTCTTTTGCCATGAGTGTTTTTAGGTTCCCTAAGAGCCTTTGTGATAATATAACAAAAAGTTTTGCTAGGTTTTGGTGGGGATCTAGCCCTAATAAAAAAAAGCTTCATTGGTTTAAATGGGAGACCCTTTGTCTTCCAAAAAGTTTAGGTGGGCTGAATTTTAGAGATATCGAAGGTTTTAATCAAGCTCTAGTAGCTAAACAAGTTTGGAGGGTCCTTACAAATCCTAGCTCCTTAGTGTCTAGATTCCTTAAAAGCTTATATTTTCCAAATTCTAATATCTTAGAAGCAGTCGGGGGTAGACATCCTTCTTTCCTTTGGAAAAGTTTATTATGGGGTAGAGATTTATTATGCAAAGGCTTGAGATATAGAGTTGGGAATGGGGAGAGTATTAACATGTTTAAAGATCCCTGGATTCCCAAGGAATTTACATTTAGGCCTACTTGTATTGATAGTTCTATGTTTAACACTAAGGTATCAGATTTTACTACCCCATCTGGTGATTGGAATTTGGAAAAACTAAAATGTGCTGTCATGGATATTGATTATGATCTAATTAGAAGTATTCCACTTAATAAGAATCTGAATGATAAAATCAGTTGGCATTACGACAAAACAGGAAGATATTCAGTGAAAAGTGGTTATAATCTTTTTCAAAAAATTAAGATTGACGGTATATCAGCTAGTTCTTCCCCTATGACAAGAATTTGGAACAACATTTGGAAATTAAAGGTTCCCACTAAAATTAAACACTTTTGTTGGAAAGCCCTAAAAGAATCTCTTCCTAATAATTTCAATCTCCAGAATAGAGGTGTTAATATTTCAAACTTGTACCCTATGTGTGAATCCCAGATAGAAAATACAGATCATTGTCTATTTAGTTGTATTAGAGCTAAAGAAATTTGGAATCTGACCTTTAATAATGTTTTTTTGGAGGAGGATTTTTTCGGTAGCTTCATTGATCGATGGTGCAAGATCGATTCGGAACTTACACAGGTAGAGTTGGAGCTGGTGGCCGTTACTTGTTGGGCGATCTGGAGCGATAGGAACAAGCTGGTGCATGGTGAAGCTATTTCCCCTGTTTCAATCAAAAGCAGATGGATTCGGAATTATATTGACTCTTTTAAGAAGGCTAATACAAGGAATAGTCTGAATCAAGCAGCTAATCGTACTCGTATCTCTAATTCAAGCCCTTCCTCCTGGTCGCCTCCTCCTGAGGAATTTTGGAAGCTTAATACTGATGCTGCATGCGTTCCATCCTCTTCTTCAACGGGTCTGGGGATGATTTGTAGGAACAAGGATGGTGCAGCGATGATTGCCTCAGCTTTATTTTTCGATTTCCCAATGGATCCTCTGAGGGCAGAGGTGAAAGCAATTTACGAAGGCATGAAGGATGCTTTGTCGATGGGATGCAAACAGCTGAAAGTGGAATCTGATAATTTGATGGCAATTAATTTTATCAATAAAGCTTCAGTGGTTTGGGACGAAGTGGAAGTTGAAGTGGCAAGAATATGGGATTTAATTCCAAGTTTTTTAAAAATAGATTTTTCCTTTGTTCCCAGGTGTTGTAATAAAGTGGCTGACGTGGTGGCAAAGTTTGCCAGATCTGTAGGAAGTAATTCAACTTGGGTGGGTCATTTCCCTAGTTGGTTATGTACTGAGGTCCAATTGGACCTTTTTTATGCTGCCCATGTGGCGTAAATAAAGAGGTATTTTCTTTCAAAAAAAAAAAAAAAGAAGACGTTTAAAATATACAGTCACTTCAATGAAAAGGATTTAAAGAAACTTGTGTTTTAAGTTGATTCATTTAATTTGTATGGACTGATTAAAAAAAAAAGGGAATTATGGTAATATGTTTACTATATCATATCAAATTCATCCTTTTCCGTTGTAAAAAAAAAAAAAAGAATTCATCCTTTTCCAAAACCTTTTCCTATTTGGTTTGTTGCATATACACGTCACTTCCAAACACATTTGTTTCCAAAATCTTTTCCTATTTGGTTTTGGGGAATAATTTCTCTATAAAATCTCCTCCTCCTCCCCTGTCTTTTTCACAGAAAAACTCAAACTCTCCAAAGCAAATTAAAATCCCCATGGCGAATAGTACTCATCAGCAATGCAGCTCTCTCAATATCGACTTGACTCCAGAAGAACTTGAGGTCTCTCAAATCCTCTCTGAATTACCTCTTCTCATTCAGAAATTTGCCTTAGATTCGTCGTTGCAGTTGAGGGAGTCCAGTCCTGCTACTCTCTCGTCGTCCACTCAATCTAATGAGAATGTCAATGTCAAGCGCTCCAACAACTCTTGA

mRNA sequence

ATGCTTATTAAAGAAAGATTAGACCGGTTCCTATGTAATTCAGAATTCGACTCCCTGTTTAATTTCATAAAAGCTAGTAATTTGGACTGGATGTTTTCTGATCATAAACCCATTGAGATATGTATGGAGAGGAGAAAACCTAAAACTATGAGTAGAAAGGACTACCCTTTCAAATTTGAAGAGCTTTGGACGACCTATGATGAATGCGAGGACCTAATTGTTAATAATGGTACATGGAAAGGTAATGATTTTCCTTTTGCTTCTTTGTCTGGAAATTTACAGAACTGCTCTTATGCACTTTCTAAATGGGGTAAAGAAATTAACTCTTTTAGGAAAAATAGGATAGCTGATTGCAAAAGGGACCTTAAAATTGCTTACAATAATCTCTCCAATACCAATTTTGATATAATTCATAGCATAGAATTTGAACTGGATAATTTGTTAGAGGAAGAAGAGATATATTGGAAACAAAACTTCATTGATCGATGGTGCAAGATCGATTCGGAACTTACACAGGTAGAGTTGGAGCTGGTGGCCGTTACTTGTTGGGCGATCTGGAGCGATAGGAACAAGCTGGTGCATGGTGAAGCTATTTCCCCTGTTTCAATCAAAAGCAGATGGATTCGGAATTATATTGACTCTTTTAAGAAGGCTAATACAAGGAATAGTCTGAATCAAGCAGCTAATCGTACTCGTATCTCTAATTCAAGCCCTTCCTCCTGGTCGCCTCCTCCTGAGGAATTTTGGAAGCTTAATACTGATGCTGCATGCGTTCCATCCTCTTCTTCAACGGGTCTGGGGATGATTTGTAGGAACAAGGATGGTGCAGCGATGATTGCCTCAGCTTTATTTTTCGATTTCCCAATGGATCCTCTGAGGGCAGAGGTGAAAGCAATTTACGAAGGCATGAAGGATGCTTTGTCGATGGGATGCAAACAGCTGAAAGTGGAATCTGATAATTTGATGGCAATTAATTTTATCAATAAAGCTTCAGTGGTTTGGGACGAAGTGGAAGTTGAAGTGGCAAGAATATGGGATTTAATTCCAAGTTTTTTAAAAATAGATTTTTCCTTTGTTCCCAGCTCTCTCAATATCGACTTGACTCCAGAAGAACTTGAGGTCTCTCAAATCCTCTCTGAATTACCTCTTCTCATTCAGAAATTTGCCTTAGATTCGTCGTTGCAGTTGAGGGAGTCCAGTCCTGCTACTCTCTCGTCGTCCACTCAATCTAATGAGAATGTCAATGTCAAGCGCTCCAACAACTCTTGA

Coding sequence (CDS)

ATGCTTATTAAAGAAAGATTAGACCGGTTCCTATGTAATTCAGAATTCGACTCCCTGTTTAATTTCATAAAAGCTAGTAATTTGGACTGGATGTTTTCTGATCATAAACCCATTGAGATATGTATGGAGAGGAGAAAACCTAAAACTATGAGTAGAAAGGACTACCCTTTCAAATTTGAAGAGCTTTGGACGACCTATGATGAATGCGAGGACCTAATTGTTAATAATGGTACATGGAAAGGTAATGATTTTCCTTTTGCTTCTTTGTCTGGAAATTTACAGAACTGCTCTTATGCACTTTCTAAATGGGGTAAAGAAATTAACTCTTTTAGGAAAAATAGGATAGCTGATTGCAAAAGGGACCTTAAAATTGCTTACAATAATCTCTCCAATACCAATTTTGATATAATTCATAGCATAGAATTTGAACTGGATAATTTGTTAGAGGAAGAAGAGATATATTGGAAACAAAACTTCATTGATCGATGGTGCAAGATCGATTCGGAACTTACACAGGTAGAGTTGGAGCTGGTGGCCGTTACTTGTTGGGCGATCTGGAGCGATAGGAACAAGCTGGTGCATGGTGAAGCTATTTCCCCTGTTTCAATCAAAAGCAGATGGATTCGGAATTATATTGACTCTTTTAAGAAGGCTAATACAAGGAATAGTCTGAATCAAGCAGCTAATCGTACTCGTATCTCTAATTCAAGCCCTTCCTCCTGGTCGCCTCCTCCTGAGGAATTTTGGAAGCTTAATACTGATGCTGCATGCGTTCCATCCTCTTCTTCAACGGGTCTGGGGATGATTTGTAGGAACAAGGATGGTGCAGCGATGATTGCCTCAGCTTTATTTTTCGATTTCCCAATGGATCCTCTGAGGGCAGAGGTGAAAGCAATTTACGAAGGCATGAAGGATGCTTTGTCGATGGGATGCAAACAGCTGAAAGTGGAATCTGATAATTTGATGGCAATTAATTTTATCAATAAAGCTTCAGTGGTTTGGGACGAAGTGGAAGTTGAAGTGGCAAGAATATGGGATTTAATTCCAAGTTTTTTAAAAATAGATTTTTCCTTTGTTCCCAGCTCTCTCAATATCGACTTGACTCCAGAAGAACTTGAGGTCTCTCAAATCCTCTCTGAATTACCTCTTCTCATTCAGAAATTTGCCTTAGATTCGTCGTTGCAGTTGAGGGAGTCCAGTCCTGCTACTCTCTCGTCGTCCACTCAATCTAATGAGAATGTCAATGTCAAGCGCTCCAACAACTCTTGA

Protein sequence

MLIKERLDRFLCNSEFDSLFNFIKASNLDWMFSDHKPIEICMERRKPKTMSRKDYPFKFEELWTTYDECEDLIVNNGTWKGNDFPFASLSGNLQNCSYALSKWGKEINSFRKNRIADCKRDLKIAYNNLSNTNFDIIHSIEFELDNLLEEEEIYWKQNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSFLKIDFSFVPSSLNIDLTPEELEVSQILSELPLLIQKFALDSSLQLRESSPATLSSSTQSNENVNVKRSNNS
Homology
BLAST of Spg028180 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 5.7e-23
Identity = 73/202 (36.14%), Postives = 107/202 (52.97%), Query Frame = 0

Query: 158  NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKK 217
            +F++ W  +  +L   +L L A+T W IW+DRN L+HG+ +SPV  K  W+  ++DS  +
Sbjct: 1214 SFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQ 1273

Query: 218  ANTRNSLNQAANRTRISNSSP--SSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDG 277
            A   N     + RT+ SN  P    W P      KLNTDAAC    +ST  G I R+   
Sbjct: 1274 AQMSN----YSPRTQ-SNHRPVVQYWRPSSSVSLKLNTDAAC--RGASTSFGCIIRDSSC 1333

Query: 278  AAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWD 337
            + + A+++   FP+ PL AE++ I EG+K A +     L+VESD+L+AI  I        
Sbjct: 1334 SLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRG 1393

Query: 338  EVEVEVARIWDLIPSFLKIDFS 358
            + +  V  I  L   F  I FS
Sbjct: 1394 DEQNWVMEIQALTCCFAFISFS 1408

BLAST of Spg028180 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 5.4e-21
Identity = 62/171 (36.26%), Postives = 97/171 (56.73%), Query Frame = 0

Query: 158 NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKK 217
           +F+D W  +  +L   + +L A T WAIW DRN   HG ++S  +++  WI +Y  ++ +
Sbjct: 35  SFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQ 94

Query: 218 ANTRNSLNQAANRTRISNSSPS-SWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGA 277
           A      N+  +  + S   PS  W PP +   K+N+DAAC   S+STGLG+I R+  G 
Sbjct: 95  AQE----NKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAAC--RSTSTGLGLIIRDHFGV 154

Query: 278 AMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFI 328
            ++A ++F   P++PL AE++ I E +K A S    +L VESD   AI  +
Sbjct: 155 LLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLV 199

BLAST of Spg028180 vs. NCBI nr
Match: XP_030958792.1 (uncharacterized protein LOC115980708 [Quercus lobata])

HSP 1 Score: 96.7 bits (239), Expect = 5.2e-16
Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 0

Query: 169 ELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAA 228
           +L++ E  L  +TCW IW  RN ++HG      S  ++   +Y+  +  A       Q +
Sbjct: 126 KLSKEEWNLFWITCWLIWHQRNTVIHGGVFQHPSRSAQRAVDYLKEYTAA-------QDS 185

Query: 229 NRTRISNSSP--SSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGAAMIASALFFD 288
           +   I N  P   +W PPPE F+KLN D+AC     ++G G + RN+ G  M A A+   
Sbjct: 186 SHVPIPNLGPGQQTWQPPPETFFKLNFDSACFDEGDASGYGAVIRNEKGDIMAALAVRGG 245

Query: 289 FPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWD 348
              D    EV A  + ++ A+ +G  ++ +E DN + +  I +A     ++ +    IW 
Sbjct: 246 AVRDSEEVEVMACRKALEFAIDVGFTEIVLEGDNALVMKMITQAQPELSQLGLIYEDIWC 305

Query: 349 LIPSFLKIDFSFVPSSLN 365
           L   F  I ++ +  S N
Sbjct: 306 LAAGFRSISYNCIRRSAN 316

BLAST of Spg028180 vs. NCBI nr
Match: XP_023891683.1 (uncharacterized protein LOC112003714 [Quercus suber])

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-16
Identity = 56/213 (26.29%), Postives = 101/213 (47.42%), Query Frame = 0

Query: 152 EIYWKQNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNY 211
           ++ W    + +W + D       + L+ +T W IW++RN++ HG++  P S+ +RWI NY
Sbjct: 68  DLVWYARNMKQWLEED-------IRLMVMTAWGIWTNRNEVCHGKSRKPASVLARWINNY 127

Query: 212 IDSFKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAACVPSSSSTGLGMICR 271
           ++ +  AN         +      S+ ++W  P   ++K N D A        G+G++ R
Sbjct: 128 LEDYLMAN--------HSTQPYKESTDATWQFPKPLWYKANMDGAVFAQHREAGVGVMIR 187

Query: 272 NKDGAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKAS 331
           +  GA +   +     P+  L+ E KA+ E +    +MG +    ES++L  +N + +  
Sbjct: 188 DHYGAVVATLSKKLKAPLGALKVEAKAMEEAVSFTRNMGIRDCIFESESLTVVNAMLRLI 247

Query: 332 VVWDEVEVEVARIWDLIPSFLKIDFSFVPSSLN 365
                +   VA    L+P F  + FS VP S N
Sbjct: 248 DPPSAIANNVAGSLSLLPMFRAVSFSHVPRSRN 265

BLAST of Spg028180 vs. NCBI nr
Match: XP_023880941.1 (uncharacterized protein LOC111993328 [Quercus suber])

HSP 1 Score: 94.4 bits (233), Expect = 2.6e-15
Identity = 53/179 (29.61%), Postives = 92/179 (51.40%), Query Frame = 0

Query: 157 QNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFK 216
           Q FI+   +I      +E E  AVT W++W+ RN + HG+     +  ++ I +Y+   K
Sbjct: 483 QEFIEVVWEIKERKPDIEWESFAVTAWSLWNHRNAVKHGDKCKTAARITKEIADYLKEIK 542

Query: 217 KANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGA 276
           + N         N +R  + S   WSPP   ++K+N D A        G+G++ RN  G 
Sbjct: 543 QEN--------LNPSRPPDVSVPHWSPPRNGWYKVNADGAVFKDIGCCGVGIVIRNNKGL 602

Query: 277 AMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAIN-FINKASVVW 335
            M A +     P+  L +E +A+ EG+  A  +G +++++ESD+L+ I+  +N  +V W
Sbjct: 603 LMGALSKLVKLPLKALESEARAVQEGVLLAWDLGLREIEIESDSLVVISALLNPDAVPW 653

BLAST of Spg028180 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-23
Identity = 73/202 (36.14%), Postives = 107/202 (52.97%), Query Frame = 0

Query: 158  NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKK 217
            +F++ W  +  +L   +L L A+T W IW+DRN L+HG+ +SPV  K  W+  ++DS  +
Sbjct: 1214 SFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQ 1273

Query: 218  ANTRNSLNQAANRTRISNSSP--SSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDG 277
            A   N     + RT+ SN  P    W P      KLNTDAAC    +ST  G I R+   
Sbjct: 1274 AQMSN----YSPRTQ-SNHRPVVQYWRPSSSVSLKLNTDAAC--RGASTSFGCIIRDSSC 1333

Query: 278  AAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWD 337
            + + A+++   FP+ PL AE++ I EG+K A +     L+VESD+L+AI  I        
Sbjct: 1334 SLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRG 1393

Query: 338  EVEVEVARIWDLIPSFLKIDFS 358
            + +  V  I  L   F  I FS
Sbjct: 1394 DEQNWVMEIQALTCCFAFISFS 1408

BLAST of Spg028180 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-21
Identity = 62/171 (36.26%), Postives = 97/171 (56.73%), Query Frame = 0

Query: 158 NFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKK 217
           +F+D W  +  +L   + +L A T WAIW DRN   HG ++S  +++  WI +Y  ++ +
Sbjct: 35  SFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQ 94

Query: 218 ANTRNSLNQAANRTRISNSSPS-SWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGA 277
           A      N+  +  + S   PS  W PP +   K+N+DAAC   S+STGLG+I R+  G 
Sbjct: 95  AQE----NKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAAC--RSTSTGLGLIIRDHFGV 154

Query: 278 AMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFI 328
            ++A ++F   P++PL AE++ I E +K A S    +L VESD   AI  +
Sbjct: 155 LLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLV 199

BLAST of Spg028180 vs. ExPASy TrEMBL
Match: A0A803PE40 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-14
Identity = 67/201 (33.33%), Postives = 96/201 (47.76%), Query Frame = 0

Query: 170  LTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTR-NSLNQAA 229
            L+Q ELELV V  W IW+DRNK+ HGE+       + +  NY++++ KAN R  ++ +  
Sbjct: 920  LSQQELELVFVIMWVIWTDRNKINHGESRRDGMALANYATNYMENYHKANNRPTAVTEPV 979

Query: 230  NRTRISN--SSPSSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGAAMIASALFFD 289
               +IS   +    W PP     KLN DAA  P+S   G+G I RN  G  M A +    
Sbjct: 980  TPAQISTLPTEGIPWKPPDMYGLKLNVDAAVNPTSKVLGVGAIVRNYKGEVMAAMSKLVQ 1039

Query: 290  FPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWD 349
                    E KA++  +     +      VE+D L   NF+N  +  WD +      I+D
Sbjct: 1040 GCFRSDEMEAKALFHALNWISQLPLSVTLVETDALRVSNFLNHET--WD-LSCFSDIIFD 1099

Query: 350  ---LIPSFLKIDFSFVPSSLN 365
               L+ SF +I  S V  S N
Sbjct: 1100 VRCLLSSFSRIVISHVKRSAN 1117

BLAST of Spg028180 vs. ExPASy TrEMBL
Match: A0A2N9EU90 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6036 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.9e-14
Identity = 80/327 (24.46%), Postives = 149/327 (45.57%), Query Frame = 0

Query: 5   ERLDRFLCNSEFDSLFNFIKASNLDWMFSDHKPIEICMERRKPKTMSRKDYPFKFEELWT 64
           ERLDR +   E+ +LF   +  +LD+ +SDHK I +     KP  +  +  PF+FEE+WT
Sbjct: 296 ERLDRVVATPEWLTLFPSARVHHLDYRWSDHKSIWV---GTKPMVIHHRK-PFRFEEVWT 355

Query: 65  TYDECEDLIVNNGTWK--GNDFPFASLSGNLQNCSYALSKWGKEINSFRKNRIADCKRDL 124
           +    E+ I     WK      P   +   +  C   L KWG       + +I + +  L
Sbjct: 356 SDHGYEETI--EAAWKTIKPGVPMYIVWEKIHACRRGLHKWGSNNFCNIQKQIRETENQL 415

Query: 125 KIAYN-NLSNTNFDIIHSIEFELDNLLEEEEIYWKQNFIDRWCKIDSELTQVELELVAVT 184
           K A   ++   +   + +++ +L  LL ++E  W+Q     W K   + T+         
Sbjct: 416 KQAEAISMQGRDHAQVITLKAKLCALLVQDERLWRQRSRVEWLKARDKNTR--------- 475

Query: 185 CWAIWSDRNKL---VHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSP 244
                  RN+L   +  EA++ +  +++ + +     ++++T+ +  QA    R+     
Sbjct: 476 -------RNRLRLNLPIEALNHLVPRAQKLLSEFQEVQESSTQPT-RQAVPLQRV----- 535

Query: 245 SSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGAAMIASALFFDFPMDPLRAEVKA 304
            +WSPP    +K+N DAA    S+  G+G+I RN +G  M +      +P      E  A
Sbjct: 536 -TWSPPQPGRYKVNYDAAFFGDSNEVGIGVIIRNHNGEVMASLCHRIHYPHSVEAMEAYA 593

Query: 305 IYEGMKDALSMGCKQLKVESDNLMAIN 326
               ++ A+ +G + + +E D+   ++
Sbjct: 596 ARSAIQMAIDLGLQAIDIEGDSQTVVD 593

BLAST of Spg028180 vs. ExPASy TrEMBL
Match: A0A7N2RFA1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.9e-14
Identity = 56/177 (31.64%), Postives = 92/177 (51.98%), Query Frame = 0

Query: 156 KQNFIDRWCKIDSELTQVELELVAVTCWAIWSDRNKLVHGEAI-SPVSIKSRWIRNYIDS 215
           +Q+ +  + ++   LT+ ELEL  V  W IWS RN++ HG  + SP  +  R   + +  
Sbjct: 121 QQDSMQLFEEMQGRLTREELELFLVQAWLIWSQRNRISHGGKLQSPTQLNKRAF-DLLTE 180

Query: 216 FKKANTRNSLNQAANRTRISNSSPSSWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKD 275
           F++A  + ++   A+RT    S+ S W PPP   +KLN DAA  P    +G+G I RN+ 
Sbjct: 181 FRQAQEQLTI---ASRT----STVSRWCPPPNSRFKLNFDAAIFPDLKCSGIGAIIRNER 240

Query: 276 GAAMIASALFFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFINKAS 332
           G  M A +      +D   AEV A    ++ A+ +G  +L +E D+   +N +   +
Sbjct: 241 GEVMGAMSAKEQQVLDSTEAEVLACRRALEFAIDIGFSELVIEGDSAQVLNSLRSTA 289

BLAST of Spg028180 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 9.5e-08
Identity = 55/196 (28.06%), Postives = 80/196 (40.82%), Query Frame = 0

Query: 167 DSELTQVELELVAVTCWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQ 226
           DS + +V   +     W IW   N LV     +          N    +   NT  +  Q
Sbjct: 33  DSRVDRVTRFMPFWLMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLD-NTMTNEQQ 92

Query: 227 AANRTRISNSSPS---SWSPPPEEFWKLNTDAACVPSSSSTGLGMICRNKDGAAMIASAL 286
             NR    N+ PS    WSPP  +  K N DA+    ++ +GLG I RN  G  +     
Sbjct: 93  NGNR----NADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMG 152

Query: 287 FFDFPMDPLRAEVKAIYEGMKDALSMGCKQLKVESDNLMAINFIN-KASVVWDEVEVEVA 346
            F   M    AE   +   ++ +   G K++  E DN      IN K+S    +  ++  
Sbjct: 153 KFQGRMTTEEAECSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQHFLDTI 212

Query: 347 RIWDLIPSFLKIDFSF 359
           + W  IPSF  I+FSF
Sbjct: 213 QSW--IPSFESIEFSF 221

BLAST of Spg028180 vs. TAIR 10
Match: AT1G10000.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 2.9e-04
Identity = 50/186 (26.88%), Postives = 78/186 (41.94%), Query Frame = 0

Query: 182 CWAIWSDRNKLVHGEAISPVSIKSRWIRNYIDSFKKANTRNSLNQAANRTRISNSSPSSW 241
           CW IW  RN+L+   +   V      I     + + A    S   A  + R++   P+S 
Sbjct: 100 CWHIWKARNQLIFQNSHFSV------IETVTKAVQDALAWQSAQLALPKVRVATPRPNST 159

Query: 242 SPPPEEFWKLNTDAACVPSSSSTGLGMICR---NKDGAAMIASALFFDFPMDPLRAEVKA 301
           +    +F     DAA    SS  G G + +   + +      SA    FP  PL AE  A
Sbjct: 160 TTLTHDF-LCYVDAAWQQQSSLAGSGWVFQATSHSEKEITTFSAGCRRFP-SPLAAEAWA 219

Query: 302 IYEGMKDALSMGCKQLKVESDNLMAINFINKASVVWDEVEVEVARIWDLIPSFLKIDFSF 361
           I   M  AL +    L V SD+   ++ +N ++V  +E+   +  I  +   F  I F F
Sbjct: 220 IKSAMLHALQLERSDLLVLSDSKSIVDALN-SNVSLNEIFGLLVEIRSIRNRFRSISFQF 276

Query: 362 VPSSLN 365
           +P  +N
Sbjct: 280 IPRLVN 276

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158377.15.7e-2336.14uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_022131661.15.4e-2136.26uncharacterized protein LOC111004786 [Momordica charantia][more]
XP_030958792.15.2e-1628.79uncharacterized protein LOC115980708 [Quercus lobata][more]
XP_023891683.16.8e-1626.29uncharacterized protein LOC112003714 [Quercus suber][more]
XP_023880941.12.6e-1529.61uncharacterized protein LOC111993328 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DX302.8e-2336.14uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1BQ492.6e-2136.26uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A803PE405.3e-1433.33Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2N9EU906.9e-1424.46Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6036 PE=4 SV=1[more]
A0A7N2RFA16.9e-1431.64Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G65005.19.5e-0828.06Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT1G10000.12.9e-0426.88Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 249..367
e-value: 2.6E-12
score: 48.8
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 252..362
e-value: 3.3E-16
score: 59.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 401..422
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 240..364
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 240..364
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 251..364
e-value: 4.3705E-16
score: 72.3468
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 248..360

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028180.1Spg028180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity