Spg028125 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028125
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Gag-Pol polyprotein
Location	scaffold2: 42103925 .. 42105461 (-)
RNA-Seq Expression	Spg028125
Synteny	Spg028125

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGCCAGAATGCGACCGCATTCGGGCCGCATGCTGAAGAAGGTCAAGATGAGGCCACTAATGAATAGCCAGCTGATGAGGTCTTCGAACCTCTATTCAAATATGATCCACCAGCTGCTGACAGCACCTGTTCGGGAGAGAAGAGGGATGACGAAGAGTAAGCAAATGAGGAGGCCGAGACCTCCAGTGACTCAGAAACAGAATCCGATTGAGAGATTAGGGAATTGGATGATGATCAAATTCCTATCTCTGCAGCATTGAGGAAAAAGAGAAGAAGAGAGATCAGGGCAGAAAGGAGGACCAAAAACAAGAATGACCCCATATTTGCCAAGAGGCCGAGGACTAGGTCCATGGACGCCTCTCCTGCAGTTCCTCCAACCATCTCACCTACCAAGCTGAAAGCCAAATCCCCTAAGGCTGCATCTCCTAAAAATCCATTCCCAGAAGTCTTCAAAGATGTAAATTTTCAGGAACGGATGGAGATCATGAGAAAAAAAGATTTCTTGAATGAGAAGGGATTCTCTAACAGAGCAGGGACACTGCCAGAGTTCGTAACCAGAGTTATCTCACAGTATAAGTGGCAGGAGTTCTGTGCTCACCCTCAGGAGGCCGTGGTGCCTTTAGTTCGAGAATTTTACGTCGGCCTGAGGGATAAAAGCATAAGTATGGCAATGGTGAGAGGCAAGATGGTCAACTTTTCTTCCGTGGACATCAAAAGGGTGTACAGGATCAAAACACCTTGCATCAAAGAGGGAATGATGCCATTAGGAACCCCTTGGGCAAGCAGATGAAAGATGCACTAAAATTAGTGGCCAACAAGGGAGTTCAGTGAAAAGAGTCCCAGACTAAAGTGAAGACATTAATGCCAAGTGATCTAAAGCCTGAATCTGCAGTATGGCTTCACTTTATCAAGAACCGGTTGATGCCAACAACCCATGACAGCACCATCTCAGTAGAGAGAGTTATGCTCCTCTACAATATTATGAATGGTTTGGTGATCAACATCGGGAGCATTATCAGGGAGGAGATCCTTGCCTGTGGAAGGAAAAGAGCAGGAAAGCTTTTCTTTGGGTCATTGATCACCCAGCTATATCAGAGGGTGAAGATAGTCCCTGGTAAGGATGAGGAGCGTCATTTCTTCAGGTCTACCATTGACCTATCCTTGATTGGGAAGCTCCAACAAAATAATGCCCAAAAGAAAGACAAAGCCTCCACATCTCAAGCCACTCCACCATCAGGGCTGAACACGGCTTCTCCACCACAACAAACTCCTTTCTCAGGGCCAACACCATCATTTGAGGCCCTAACATTTGCCTACCAACAACTAGATCAAATCAGGGACAACCTGAGGACTTATTGGGCCTATTGAAAGGAGAGGGACGAAGCCATTAGAGAGTTCTACCTCTCCATCACCCCGAGTATTGCTCCTGTCTTTCTGGATTTTCCTCGATCACTGCTACCTCAGGAAGAGAAGGATTCTGAAGATGAAGATGAAGATGAGAATCAAGAAGAGATGCCCTCAGATGAGGATTAA

mRNA sequence

ATGAGGGCCAGAATGCGACCGCATTCGGGCCGCATGCTGAAGAAGGTCAAGATGAGGCCACTAATGAATAGCCAGCTGATGAGGTCTTCGAACCTCTATTCAAATATGATCCACCAGCTGCTGACAGCACCTGTTCGGGAGAGAAGAGGGATGACGAAGACATTGAGGAAAAAGAGAAGAAGAGAGATCAGGGCAGAAAGGAGGACCAAAAACAAGAATGACCCCATATTTGCCAAGAGGCCGAGGACTAGGTCCATGGACGCCTCTCCTGCAGTTCCTCCAACCATCTCACCTACCAAGCTGAAAGCCAAATCCCCTAAGGCTGCATCTCCTAAAAATCCATTCCCAGAAGTCTTCAAAGATGTAAATTTTCAGGAACGGATGGAGATCATGAGAAAAAAAGATTTCTTGAATGAGAAGGGATTCTCTAACAGAGCAGGGACACTGCCAGAGTTCGTAACCAGAGTTATCTCACAGTATAAGTGGCAGGAGTTCTGTGCTCACCCTCAGGAGGCCGTGGTGCCTTTAGTTCGAGAATTTTACGTCGGCCTGAGGGATAAAAGCATAATATGGCTTCACTTTATCAAGAACCGGTTGATGCCAACAACCCATGACAGCACCATCTCAGTAGAGAGAGTTATGCTCCTCTACAATATTATGAATGGTTTGGTGATCAACATCGGGAGCATTATCAGGGAGGAGATCCTTGCCTGTGGAAGGAAAAGAGCAGGAAAGCTTTTCTTTGGGTCATTGATCACCCAGCTATATCAGAGGGTGAAGATAGTCCCTGGTAAGGATGAGGAGCGTCATTTCTTCAGGGACGAAGCCATTAGAGAGTTCTACCTCTCCATCACCCCGAGTATTGCTCCTGTCTTTCTGGATTTTCCTCGATCACTGCTACCTCAGGAAGAGAAGGATTCTGAAGATGAAGATGAAGATGAGAATCAAGAAGAGATGCCCTCAGATGAGGATTAA

Coding sequence (CDS)

ATGAGGGCCAGAATGCGACCGCATTCGGGCCGCATGCTGAAGAAGGTCAAGATGAGGCCACTAATGAATAGCCAGCTGATGAGGTCTTCGAACCTCTATTCAAATATGATCCACCAGCTGCTGACAGCACCTGTTCGGGAGAGAAGAGGGATGACGAAGACATTGAGGAAAAAGAGAAGAAGAGAGATCAGGGCAGAAAGGAGGACCAAAAACAAGAATGACCCCATATTTGCCAAGAGGCCGAGGACTAGGTCCATGGACGCCTCTCCTGCAGTTCCTCCAACCATCTCACCTACCAAGCTGAAAGCCAAATCCCCTAAGGCTGCATCTCCTAAAAATCCATTCCCAGAAGTCTTCAAAGATGTAAATTTTCAGGAACGGATGGAGATCATGAGAAAAAAAGATTTCTTGAATGAGAAGGGATTCTCTAACAGAGCAGGGACACTGCCAGAGTTCGTAACCAGAGTTATCTCACAGTATAAGTGGCAGGAGTTCTGTGCTCACCCTCAGGAGGCCGTGGTGCCTTTAGTTCGAGAATTTTACGTCGGCCTGAGGGATAAAAGCATAATATGGCTTCACTTTATCAAGAACCGGTTGATGCCAACAACCCATGACAGCACCATCTCAGTAGAGAGAGTTATGCTCCTCTACAATATTATGAATGGTTTGGTGATCAACATCGGGAGCATTATCAGGGAGGAGATCCTTGCCTGTGGAAGGAAAAGAGCAGGAAAGCTTTTCTTTGGGTCATTGATCACCCAGCTATATCAGAGGGTGAAGATAGTCCCTGGTAAGGATGAGGAGCGTCATTTCTTCAGGGACGAAGCCATTAGAGAGTTCTACCTCTCCATCACCCCGAGTATTGCTCCTGTCTTTCTGGATTTTCCTCGATCACTGCTACCTCAGGAAGAGAAGGATTCTGAAGATGAAGATGAAGATGAGAATCAAGAAGAGATGCCCTCAGATGAGGATTAA

Protein sequence

MRARMRPHSGRMLKKVKMRPLMNSQLMRSSNLYSNMIHQLLTAPVRERRGMTKTLRKKRRREIRAERRTKNKNDPIFAKRPRTRSMDASPAVPPTISPTKLKAKSPKAASPKNPFPEVFKDVNFQERMEIMRKKDFLNEKGFSNRAGTLPEFVTRVISQYKWQEFCAHPQEAVVPLVREFYVGLRDKSIIWLHFIKNRLMPTTHDSTISVERVMLLYNIMNGLVINIGSIIREEILACGRKRAGKLFFGSLITQLYQRVKIVPGKDEERHFFRDEAIREFYLSITPSIAPVFLDFPRSLLPQEEKDSEDEDEDENQEEMPSDED

Homology

[Close]

BLAST of Spg028125 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-17
Identity = 61/202 (30.20%), Postives = 90/202 (44.55%), Query Frame = 0


Query: 139 EKGF----SNRAGTLPEFVTRVISQYKWQEFCAHPQEAVVPLVREFYVGLRD-------- 198
           EKGF    S   G LP F+ +VI+Q+ W++FCAHP++ +VPLVREFY  L D        
Sbjct: 46  EKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYV 105

Query: 199 ------------------------------------------------------------ 258
                                                                       
Sbjct: 106 RGVQVSWSEEAINAVFGLGDPVDEHSEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYT 165

Query: 259 --------KSIIWLHFIKNRLMPTTHDSTISVERVMLLYNIMNGLVINIGSIIREEILAC 261
                    + +W HF+K+RL+PTTH  T+S +R++LL++++ G  IN+G +I  EI AC
Sbjct: 166 CIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRAC 225

[Close]

BLAST of Spg028125 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-17
Identity = 60/202 (29.70%), Postives = 89/202 (44.06%), Query Frame = 0


Query: 139 EKGF----SNRAGTLPEFVTRVISQYKWQEFCAHPQEAVVPLVREFYVGLRD-------- 198
           EKGF    S   G LP F+ +VI+Q+ W++FCAHP++ +VPLVREFY  L D        
Sbjct: 37  EKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYV 96

Query: 199 ------------------------------------------------------------ 258
                                                                       
Sbjct: 97  RGVQVSWSEEAINAVFGLGDPVDEHSEFIENITEHDLITVLETVAVAGAEWNVSAQGAYT 156

Query: 259 --------KSIIWLHFIKNRLMPTTHDSTISVERVMLLYNIMNGLVINIGSIIREEILAC 261
                    + +W HF+K+ L+PTTH  T+S +R++LL++++ G  IN+G +I  EI AC
Sbjct: 157 CIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRAC 216

[Close]

BLAST of Spg028125 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-15
Identity = 65/246 (26.42%), Postives = 104/246 (42.28%), Query Frame = 0


Query: 100 KLKAKSPKAASPKNPFPEVFKDVNFQERMEIMRKKDFLNEKGFSNRAGTLPEFVTRVISQ 159
           ++   + KA   ++   E+  + N Q R  +  +K+F+ +   +++    P F+  VI Q
Sbjct: 35  RVARNASKAVKFESKAAEIRYEENIQNR-PLSVEKEFVWD---NSKPLEQPPFIADVIIQ 94

Query: 160 YKWQEFCAHPQEAVVPLVREFYV------------------------------------- 219
           + WQ FCAHP++ +VPLVREFY                                      
Sbjct: 95  HNWQLFCAHPEDPIVPLVREFYTNMTNPDDDTVYIRGVQVPLSVEAINTIFSLGDPIDEH 154

Query: 220 ---------------------------------------GLRDKSIIWLHFIKNRLMPTT 270
                                                   L   + +W HF+K+RL+PTT
Sbjct: 155 SEFVEDITKPELVIVLETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTT 214

[Close]

BLAST of Spg028125 vs. NCBI nr
Match: EXB53755.1 (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-15
Identity = 61/196 (31.12%), Postives = 82/196 (41.84%), Query Frame = 0


Query: 150 PEFVTRVISQYKWQEFCAHPQEAVVPLVREFYVGLRD----------------------- 209
           P F+TRVI Q+ W++FC HP   +VPLVREFY  L D                       
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 210 -----------------------------------------------------KSIIWLH 268
                                                                 + IW H
Sbjct: 64  FGLEEVVDEYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYH 123

[Close]

BLAST of Spg028125 vs. NCBI nr
Match: PON41193.1 (LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_291710 [Parasponia andersonii])

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-13
Identity = 56/180 (31.11%), Postives = 77/180 (42.78%), Query Frame = 0


Query: 150 PEFVTRVISQYKWQEFCAHPQEAVVPLVREFYV--------------------------G 209
           P F   VI+Q+ W+ FCA+P++ ++PLV EFY                           G
Sbjct: 4   PPFPADVIAQHDWRLFCAYPEDPIMPLVCEFYANITDPKEGTMYAEVFKFPEEAINAIFG 63

Query: 210 LRD------------------------------------------------KSIIWLHFI 256
           LRD                                                 + IW HF+
Sbjct: 64  LRDPVDEHSEFVEEVTEPKLLTVLETVAVTEAEWNVSSLGAYTCLQSSLNLATKIWYHFL 123

[Close]

BLAST of Spg028125 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.8e-18
Identity = 61/202 (30.20%), Postives = 90/202 (44.55%), Query Frame = 0


Query: 139 EKGF----SNRAGTLPEFVTRVISQYKWQEFCAHPQEAVVPLVREFYVGLRD-------- 198
           EKGF    S   G LP F+ +VI+Q+ W++FCAHP++ +VPLVREFY  L D        
Sbjct: 46  EKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYV 105

Query: 199 ------------------------------------------------------------ 258
                                                                       
Sbjct: 106 RGVQVSWSEEAINAVFGLGDPVDEHSEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYT 165

Query: 259 --------KSIIWLHFIKNRLMPTTHDSTISVERVMLLYNIMNGLVINIGSIIREEILAC 261
                    + +W HF+K+RL+PTTH  T+S +R++LL++++ G  IN+G +I  EI AC
Sbjct: 166 CIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRAC 225

[Close]

BLAST of Spg028125 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-17
Identity = 60/202 (29.70%), Postives = 89/202 (44.06%), Query Frame = 0


Query: 139 EKGF----SNRAGTLPEFVTRVISQYKWQEFCAHPQEAVVPLVREFYVGLRD-------- 198
           EKGF    S   G LP F+ +VI+Q+ W++FCAHP++ +VPLVREFY  L D        
Sbjct: 37  EKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYV 96

Query: 199 ------------------------------------------------------------ 258
                                                                       
Sbjct: 97  RGVQVSWSEEAINAVFGLGDPVDEHSEFIENITEHDLITVLETVAVAGAEWNVSAQGAYT 156

Query: 259 --------KSIIWLHFIKNRLMPTTHDSTISVERVMLLYNIMNGLVINIGSIIREEILAC 261
                    + +W HF+K+ L+PTTH  T+S +R++LL++++ G  IN+G +I  EI AC
Sbjct: 157 CIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRAC 216

[Close]

BLAST of Spg028125 vs. ExPASy TrEMBL
Match: A0A2P5DAQ2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-16
Identity = 65/246 (26.42%), Postives = 104/246 (42.28%), Query Frame = 0


Query: 100 KLKAKSPKAASPKNPFPEVFKDVNFQERMEIMRKKDFLNEKGFSNRAGTLPEFVTRVISQ 159
           ++   + KA   ++   E+  + N Q R  +  +K+F+ +   +++    P F+  VI Q
Sbjct: 35  RVARNASKAVKFESKAAEIRYEENIQNR-PLSVEKEFVWD---NSKPLEQPPFIADVIIQ 94

Query: 160 YKWQEFCAHPQEAVVPLVREFYV------------------------------------- 219
           + WQ FCAHP++ +VPLVREFY                                      
Sbjct: 95  HNWQLFCAHPEDPIVPLVREFYTNMTNPDDDTVYIRGVQVPLSVEAINTIFSLGDPIDEH 154

Query: 220 ---------------------------------------GLRDKSIIWLHFIKNRLMPTT 270
                                                   L   + +W HF+K+RL+PTT
Sbjct: 155 SEFVEDITKPELVIVLETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTT 214

[Close]

BLAST of Spg028125 vs. ExPASy TrEMBL
Match: W9QTD9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.6e-16
Identity = 61/196 (31.12%), Postives = 82/196 (41.84%), Query Frame = 0


Query: 150 PEFVTRVISQYKWQEFCAHPQEAVVPLVREFYVGLRD----------------------- 209
           P F+TRVI Q+ W++FC HP   +VPLVREFY  L D                       
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 210 -----------------------------------------------------KSIIWLH 268
                                                                 + IW H
Sbjct: 64  FGLEEVVDEYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYH 123

[Close]

BLAST of Spg028125 vs. ExPASy TrEMBL
Match: A0A2P5AXB5 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_291710 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-13
Identity = 56/180 (31.11%), Postives = 77/180 (42.78%), Query Frame = 0


Query: 150 PEFVTRVISQYKWQEFCAHPQEAVVPLVREFYV--------------------------G 209
           P F   VI+Q+ W+ FCA+P++ ++PLV EFY                           G
Sbjct: 4   PPFPADVIAQHDWRLFCAYPEDPIMPLVCEFYANITDPKEGTMYAEVFKFPEEAINAIFG 63

Query: 210 LRD------------------------------------------------KSIIWLHFI 256
           LRD                                                 + IW HF+
Sbjct: 64  LRDPVDEHSEFVEEVTEPKLLTVLETVAVTEAEWNVSSLGAYTCLQSSLNLATKIWYHFL 123

The following BLAST results are available for this feature:

BLAST of Spg028125 vs. NCBI nr


Match Name	E-value	Identity	Description
PON46472.1	1.6e-17	30.20	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON35554.1	4.7e-17	29.70	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
PON70375.1	1.2e-15	26.42	hypothetical protein PanWU01x14_080440 [Parasponia andersonii]	[more]
EXB53755.1	2.0e-15	31.12	hypothetical protein L484_022412 [Morus notabilis]	[more]
PON41193.1	5.4e-13	31.11	LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_291710 [Parasponia anderson...	[more]

BLAST of Spg028125 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028125 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BCG4	7.8e-18	30.20	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5AGA5	2.3e-17	29.70	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5DAQ2	5.6e-16	26.42	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE...	[more]
W9QTD9	9.6e-16	31.12	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1	[more]
A0A2P5AXB5	2.6e-13	31.11	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_291710 PE...	[more]

BLAST of Spg028125 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 302..324
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..324
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028125.1	Spg028125.1	mRNA