Spg028112 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028112
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold2: 46305524 .. 46307506 (+)
RNA-Seq ExpressionSpg028112
SyntenySpg028112
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCCTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCGGGAAGCTAAAAGCGTCCTTATTAATGCATTGATAGAGTCTGATGGTACAAACATCCCAACCTCCGAGGCACGCACATGTGCTTCGTGTTGCATGTCTATCGGATTTTCTGATGAAGATTTATTGTTAGGGTCAAAGCCACACAATAGACCTCTATTCGTCTCAGGATACATTCGAGAACAAAGGGTTAGCCGGATCCTCATCGATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAGTTAGGCATCTTGATGGAGGAACTATCAAACAGTAAGTTGGTGATCCAAGGCTTCAATCAGGGTGGACAACGGGCAATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAAGCTGATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAGCTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCCACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGACACCAACCCATTTTCTGAAGCTGAGTCTCATTTCGCTGATGCAAAGTTTTATCTGAAGAATGAAAACACAGGGGAAACCATACCTGCAGAAATCCCCTTGATAAAAAAGAATGATAAACTCGATTTGGAGCCCCATGCAGATGCAAGAAAAGAAGCTGTTGAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCATCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGATGTTGAAATTTTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCCGAGGGTGATCAGATAAAAGCGATCTTGCCTGACAGACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCAAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTGATGAAAGATCTGAGCTCTCTGCAACACAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACAAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCAGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTTTGTTTTTAGGCGCATCAGGCCACCAGTTGCCCGTGCTTTAGTCTTTCAGAGATTAAGTGTTAATGAAGCGGAAGAAGAAAGCGCACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGGGGAGAGTACATTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGATGA

mRNA sequence

ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCCTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGCCCCATGCAGATGCAAGAAAAGAAGCTGTTGAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCATCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACAAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCAGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTTTGTTTTTAGGCGCATCAGGCCACCAGTTGCCCGTGCTTTAGTCTTTCAGAGATTAAGTGTTAATGAAGCGGAAGAAGAAAGCGCACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGGGGAGAGTACATTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGATGA

Coding sequence (CDS)

ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCCTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGCCCCATGCAGATGCAAGAAAAGAAGCTGTTGAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCATCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACAAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCAGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTTTGTTTTTAGGCGCATCAGGCCACCAGTTGCCCGTGCTTTAGTCTTTCAGAGATTAAGTGTTAATGAAGCGGAAGAAGAAAGCGCACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGGGGAGAGTACATTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGATGA

Protein sequence

MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFLCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTPHADARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEGESTFSTSDVTRPSVFQRLSVTTR
Homology
BLAST of Spg028112 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 1.7e-41
Identity = 156/480 (32.50%), Postives = 208/480 (43.33%), Query Frame = 0

Query: 4   SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPV 63
           SQEK   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+QK K KKK+R+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526

Query: 64  MEESEDFLCPPQPITLAEYFPRRFLDDSQGEALETVT-----------------CHIVDV 123
            E+ +DF    + +TLA++FP RFL D Q E    V                  C  +D 
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586

Query: 124 VEDD-----------------------------------DVPTS---------------- 183
            ++D                                    +P S                
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646

Query: 184 ---------------------SSGTPH------------------ADARKEAVEDMDTSD 243
                                + G+P                   + A +E+ +   T  
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706

Query: 244 LKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK---------- 300
             K EASTS AK  +V DEK SN PILRYVPLSRRKKGESPF E  + +K          
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766

BLAST of Spg028112 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 2.9e-41
Identity = 108/236 (45.76%), Postives = 139/236 (58.90%), Query Frame = 0

Query: 124 ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 183
           A KE  + + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 184 SIK-------------------------------------------KKLLKEGYSLPTTR 243
            +K                                           KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 244 KGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALV 303
           KGLGYKSPEP+RITR+GK KV D NHITV+EVD  +EKE  +QRT  F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

Query: 304 FQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM 317
           F+RLS+ EA+ +  Q T++  R S F+RL++   +E+    T   T+PSAF+RL++
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSI 423

BLAST of Spg028112 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 3.2e-40
Identity = 108/246 (43.90%), Postives = 140/246 (56.91%), Query Frame = 0

Query: 124 ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 183
           A KE  + + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 152 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 211

Query: 184 SIK-----------------------------------------------------KKLL 243
            +K                                                     KKLL
Sbjct: 212 GLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLL 271

Query: 244 KEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRR 303
           +EG+ +P +RKGLGYKSPEP+RITR+GK KV D+NHITV+EVD  +EKE  +QRT  F R
Sbjct: 272 REGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDR 331

Query: 304 IRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSA 317
           I P VARA VF+RLS+ EAE +  Q T++  + S F+RL++   +E+    T   T+PSA
Sbjct: 332 ISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSA 391

BLAST of Spg028112 vs. NCBI nr
Match: KAA0043405.1 (hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 7.9e-39
Identity = 100/206 (48.54%), Postives = 129/206 (62.62%), Query Frame = 0

Query: 124 ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 183
           A KE  + + T   +KGEASTS  K  ++ DEK SN  ILRYVPLSRR+KGESPF +  +
Sbjct: 56  ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115

Query: 184 SIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVE 243
            +K             KKLL+EG+ +P +RKG GYKSPEP+ I R+ K KV D+NHITV 
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175

Query: 244 EVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLS 303
           EVD  +EKE   QR   F +IRP V R  VF+RLSV + E +  Q T+S  + S  +RL+
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLT 235

Query: 304 MPIGDEESTFSTPNVTRPSAFQRLNM 317
           M    E+ T      TRPSAF+RL++
Sbjct: 236 MTFKKEKCTCQALRATRPSAFERLSV 261

BLAST of Spg028112 vs. NCBI nr
Match: KAA0047672.1 (uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK08327.1 uncharacterized protein E5676_scaffold648G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 3.9e-38
Identity = 105/234 (44.87%), Postives = 149/234 (63.68%), Query Frame = 0

Query: 89  DDSQGEALETVTCHIVDVVEDDDVPTSSSGTPHADARKEAVEDMDTSDLKKGEASTSLAK 148
           +DS  EA+ ++   +V+  ++  + + +S  PH        +  +T    K EASTS AK
Sbjct: 663 NDSSPEAV-SIEVLLVNREDNFQLKSLASRKPH--------KSTETFHSGKNEASTSTAK 722

Query: 149 PKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL---PTTRKG 208
             ++ +E  SN PILRYVPLSR KKGESPF E  + +K    ++LKE +++     T+KG
Sbjct: 723 SVILMNENTSNPPILRYVPLSRCKKGESPFVESPQGLKVGDIEVLKESFTIQLTKITKKG 782

Query: 209 LGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQ 268
           LGYKSPEP+RITR+GK KV D+NHITV+EVD  + KE   QRT  F RI P VARA VF+
Sbjct: 783 LGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEGKEGHSQRTSAFDRISPHVARAPVFE 842

Query: 269 RLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM 317
           RLS+ EA+ +  Q T++  R S F+RL++   +E+        T+PSAF+RL++
Sbjct: 843 RLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQASMTTKPSAFERLSI 887

BLAST of Spg028112 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 8.3e-42
Identity = 156/480 (32.50%), Postives = 208/480 (43.33%), Query Frame = 0

Query: 4   SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPV 63
           SQEK   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+QK K KKK+R+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526

Query: 64  MEESEDFLCPPQPITLAEYFPRRFLDDSQGEALETVT-----------------CHIVDV 123
            E+ +DF    + +TLA++FP RFL D Q E    V                  C  +D 
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586

Query: 124 VEDD-----------------------------------DVPTS---------------- 183
            ++D                                    +P S                
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646

Query: 184 ---------------------SSGTPH------------------ADARKEAVEDMDTSD 243
                                + G+P                   + A +E+ +   T  
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706

Query: 244 LKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK---------- 300
             K EASTS AK  +V DEK SN PILRYVPLSRRKKGESPF E  + +K          
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766

BLAST of Spg028112 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 108/236 (45.76%), Postives = 139/236 (58.90%), Query Frame = 0

Query: 124 ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 183
           A KE  + + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 184 SIK-------------------------------------------KKLLKEGYSLPTTR 243
            +K                                           KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 244 KGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALV 303
           KGLGYKSPEP+RITR+GK KV D NHITV+EVD  +EKE  +QRT  F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

Query: 304 FQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM 317
           F+RLS+ EA+ +  Q T++  R S F+RL++   +E+    T   T+PSAF+RL++
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSI 423

BLAST of Spg028112 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.6e-40
Identity = 108/246 (43.90%), Postives = 140/246 (56.91%), Query Frame = 0

Query: 124 ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 183
           A KE  + + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 152 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 211

Query: 184 SIK-----------------------------------------------------KKLL 243
            +K                                                     KKLL
Sbjct: 212 GLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLL 271

Query: 244 KEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRR 303
           +EG+ +P +RKGLGYKSPEP+RITR+GK KV D+NHITV+EVD  +EKE  +QRT  F R
Sbjct: 272 REGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDR 331

Query: 304 IRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSA 317
           I P VARA VF+RLS+ EAE +  Q T++  + S F+RL++   +E+    T   T+PSA
Sbjct: 332 ISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSA 391

BLAST of Spg028112 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.8e-39
Identity = 100/206 (48.54%), Postives = 129/206 (62.62%), Query Frame = 0

Query: 124 ARKEAVEDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 183
           A KE  + + T   +KGEASTS  K  ++ DEK SN  ILRYVPLSRR+KGESPF +  +
Sbjct: 56  ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115

Query: 184 SIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKVADTNHITVE 243
            +K             KKLL+EG+ +P +RKG GYKSPEP+ I R+ K KV D+NHITV 
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175

Query: 244 EVDDSKEKESVDQRTFVFRRIRPPVARALVFQRLSVNEAEEESAQPTNSSTRPSVFRRLS 303
           EVD  +EKE   QR   F +IRP V R  VF+RLSV + E +  Q T+S  + S  +RL+
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLT 235

Query: 304 MPIGDEESTFSTPNVTRPSAFQRLNM 317
           M    E+ T      TRPSAF+RL++
Sbjct: 236 MTFKKEKCTCQALRATRPSAFERLSV 261

BLAST of Spg028112 vs. ExPASy TrEMBL
Match: A0A5D3C8N8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001250 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-38
Identity = 105/234 (44.87%), Postives = 149/234 (63.68%), Query Frame = 0

Query: 89  DDSQGEALETVTCHIVDVVEDDDVPTSSSGTPHADARKEAVEDMDTSDLKKGEASTSLAK 148
           +DS  EA+ ++   +V+  ++  + + +S  PH        +  +T    K EASTS AK
Sbjct: 663 NDSSPEAV-SIEVLLVNREDNFQLKSLASRKPH--------KSTETFHSGKNEASTSTAK 722

Query: 149 PKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL---PTTRKG 208
             ++ +E  SN PILRYVPLSR KKGESPF E  + +K    ++LKE +++     T+KG
Sbjct: 723 SVILMNENTSNPPILRYVPLSRCKKGESPFVESPQGLKVGDIEVLKESFTIQLTKITKKG 782

Query: 209 LGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKESVDQRTFVFRRIRPPVARALVFQ 268
           LGYKSPEP+RITR+GK KV D+NHITV+EVD  + KE   QRT  F RI P VARA VF+
Sbjct: 783 LGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEGKEGHSQRTSAFDRISPHVARAPVFE 842

Query: 269 RLSVNEAEEESAQPTNSSTRPSVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM 317
           RLS+ EA+ +  Q T++  R S F+RL++   +E+        T+PSAF+RL++
Sbjct: 843 RLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQASMTTKPSAFERLSI 887

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0061113.11.7e-4132.50ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... [more]
KAA0055957.12.9e-4145.76uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa][more]
TYK28162.13.2e-4043.90uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa][more]
KAA0043405.17.9e-3948.54hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa][more]
KAA0047672.13.9e-3844.87uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BY548.3e-4232.50Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UMY21.4e-4145.76Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3DXC71.6e-4043.90Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7TPR53.8e-3948.54RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3C8N81.9e-3844.87Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00125... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028112.1Spg028112.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process