Spg028079 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028079
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Exonuclease domain-containing protein
Location	scaffold2: 47018561 .. 47019862 (+)
RNA-Seq Expression	Spg028079
Synteny	Spg028079

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAACAGTTCCGATGTGCTTTTCGATCTTGCGAGTTCCGAAGTTTGGAGTCCACACTTTATCTAATTTATGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATGGTCAGCTTGGTTTTAGAATCTATAACCTTGAAGATGGGCAGAACAAGAGATGGACCAGAAAATCTGTGACCACAAAAGCAGGGAGGAAAGCCAAAACCCACCCCAGCCGTAAACCAAGCGATATCAGAAATGAAATCTTAGAGGAATCGGTCTCGACAAGCTGTATAGTTAGCATTAACAAGACTGAGAAAAGTGAAACTCAGAAGCTTCAATACTGTGATATTCAACAAACGATTATTGAGAACAAGGACTTGGCTTGCCGCGTGACAGTTATAATCTTTGACATTGAAACGACAGGTTTTAGTAGAAACAAAGATAGAATAGTGGAAATAGCATTTCGAGATCTTTCAGGAGGAGAAAATAGCACCTTCCAAACACTAATAAATCCAGAGTGCTATATTCCAAATTCAGATCTACATGGCATTACAAACCGTATGGTCAGTCGACCCGAAGTTCCGAGGTATCGAAATGCTCGGTGTAGTCGCATTCCTCTATTATTTACCCTCTCTGTTCAGTGCTAGTTAAATATATTGACTCCAATTTGAATCTTGGGTTAGGTTTATGCTAGGTTCCCCCATTCAGTTTTCCTAAGTAATTGACTTTCATTTTTATCTACTGTGATATTTGCAGAGTGGATCAATCAATATATAAACGTTTCTTTTCTATGTTCATGTAGGATGGAGGAACTTATTCCAATTTTATTACAATTTGTTAAAAGCCGTCAGAAACCTGATGGTTATGTATTATTGGTAGCTCATAATGCTCGTGCCTTCGACGTGCCGTTTTTGCTCAAGGAATTCAGCCGTTGCTCCGTCGACATTCCTGAAAATTGGCTATTTTTCGATAACATGATTTTAGCCCGTCAGTTGATGAAATCCTCAGGTTAGTTTTTTCCCTTTGCTCATATTTTCTTGCTGGTTTGTTTTGTGATAGAAAGATTAATGTGATGTAATGTAATATCGTGATCAGATTCGAAGATTACGAGAATGTCATTACAAGCTCTTCGCGAGTATTACGATATTCCGCTGGTGGGTTCAGCTCACCGAGCAATGTCGGACGTGATGTCGTTGTCGCGGATTCTTCAAAGGCTTACTTTTGACCTCAAGCTAGGCATCTCGGATCTCATCGAAAGATCTTTCACAGCTTCAGATCTGATTAATAAGAAGAAGAACTAG

mRNA sequence

ATGATAACAGTTCCGATGTGCTTTTCGATCTTGCGAGTTCCGAAGTTTGGAGTCCACACTTTATCTAATTTATGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATGGTCAGCTTGGTTTTAGAATCTATAACCTTGAAGATGGGCAGAACAAGAGATGGACCAGAAAATCTGTGACCACAAAAGCAGGGAGGAAAGCCAAAACCCACCCCAGCCGTAAACCAAGCGATATCAGAAATGAAATCTTAGAGGAATCGGTCTCGACAAGCTGTATAGTTAGCATTAACAAGACTGAGAAAAGTGAAACTCAGAAGCTTCAATACTGTGATATTCAACAAACGATTATTGAGAACAAGGACTTGGCTTGCCGCGTGACAGTTATAATCTTTGACATTGAAACGACAGGTTTTAGTAGAAACAAAGATAGAATAGTGGAAATAGCATTTCGAGATCTTTCAGGAGGAGAAAATAGCACCTTCCAAACACTAATAAATCCAGAGTGCTATATTCCAAATTCAGATCTACATGGCATTACAAACCGTATGGTCAGTCGACCCGAAGTTCCGAGGATGGAGGAACTTATTCCAATTTTATTACAATTTGTTAAAAGCCGTCAGAAACCTGATGGTTATGTATTATTGGTAGCTCATAATGCTCGTGCCTTCGACGTGCCGTTTTTGCTCAAGGAATTCAGCCGTTGCTCCGTCGACATTCCTGAAAATTGGCTATTTTTCGATAACATGATTTTAGCCCGTCAGTTGATGAAATCCTCAGATTCGAAGATTACGAGAATGTCATTACAAGCTCTTCGCGAGTATTACGATATTCCGCTGGTGGGTTCAGCTCACCGAGCAATGTCGGACGTGATGTCGTTGTCGCGGATTCTTCAAAGGCTTACTTTTGACCTCAAGCTAGGCATCTCGGATCTCATCGAAAGATCTTTCACAGCTTCAGATCTGATTAATAAGAAGAAGAACTAG

Coding sequence (CDS)

ATGATAACAGTTCCGATGTGCTTTTCGATCTTGCGAGTTCCGAAGTTTGGAGTCCACACTTTATCTAATTTATGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATGGTCAGCTTGGTTTTAGAATCTATAACCTTGAAGATGGGCAGAACAAGAGATGGACCAGAAAATCTGTGACCACAAAAGCAGGGAGGAAAGCCAAAACCCACCCCAGCCGTAAACCAAGCGATATCAGAAATGAAATCTTAGAGGAATCGGTCTCGACAAGCTGTATAGTTAGCATTAACAAGACTGAGAAAAGTGAAACTCAGAAGCTTCAATACTGTGATATTCAACAAACGATTATTGAGAACAAGGACTTGGCTTGCCGCGTGACAGTTATAATCTTTGACATTGAAACGACAGGTTTTAGTAGAAACAAAGATAGAATAGTGGAAATAGCATTTCGAGATCTTTCAGGAGGAGAAAATAGCACCTTCCAAACACTAATAAATCCAGAGTGCTATATTCCAAATTCAGATCTACATGGCATTACAAACCGTATGGTCAGTCGACCCGAAGTTCCGAGGATGGAGGAACTTATTCCAATTTTATTACAATTTGTTAAAAGCCGTCAGAAACCTGATGGTTATGTATTATTGGTAGCTCATAATGCTCGTGCCTTCGACGTGCCGTTTTTGCTCAAGGAATTCAGCCGTTGCTCCGTCGACATTCCTGAAAATTGGCTATTTTTCGATAACATGATTTTAGCCCGTCAGTTGATGAAATCCTCAGATTCGAAGATTACGAGAATGTCATTACAAGCTCTTCGCGAGTATTACGATATTCCGCTGGTGGGTTCAGCTCACCGAGCAATGTCGGACGTGATGTCGTTGTCGCGGATTCTTCAAAGGCTTACTTTTGACCTCAAGCTAGGCATCTCGGATCTCATCGAAAGATCTTTCACAGCTTCAGATCTGATTAATAAGAAGAAGAACTAG

Protein sequence

MITVPMCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRWTRKSVTTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQTIIENKDLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSDLHGITNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDIPENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQRLTFDLKLGISDLIERSFTASDLINKKKN

Homology

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BLAST of Spg028079 vs. NCBI nr
Match: KAG6590475.1 (Exonuclease DPD1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024006.1 Exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 565.8 bits (1457), Expect = 2.4e-157
Identity = 283/332 (85.24%), Postives = 310/332 (93.37%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRW 60
           MIT PMCFSILRVPKFGV TL+NLWRENFHPLNRNYGHSSWY QLGFRIYNLE GQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSVTTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAKT PS KPS+IRNEILEESVSTSC VSINK+EK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 IIENKDLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSD 180
           I+++K+LA  VTVI FDIETTGFSR  DRIVEIA +DLSGGENSTFQTLINPECYIPN+ 
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 LHGITNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRC 240
           +HGIT+RMVSRP+VPRM+ELIPILLQF+KSRQKPDGYVLLVAHNAR FDVPFLLKEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SVDIPENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSR 300
           SVDIP NWLFFDN++LARQLMKS+DSKIT++SLQALREYY+IPLVGSAHRAMSDV +LS 
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLGISDLIERSFTASDLINKKKN 333
           ILQRLTFDLKLGI DLIERSFT SDLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

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BLAST of Spg028079 vs. NCBI nr
Match: XP_022961373.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022961374.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 563.9 bits (1452), Expect = 9.0e-157
Identity = 282/332 (84.94%), Postives = 309/332 (93.07%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRW 60
           MIT PMCFSILRVPKFGV TL+NLWRENFHPLNRNYGHSSWY QLGFR YNLE GQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRTYNLEGGQDKRW 60

Query: 61  TRKSVTTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAKT PS KPS+IRNEILEESVSTSC VSINK+EK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 IIENKDLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSD 180
           I+++K+LA  VTVI FDIETTGFSR  DRIVEIA +DLSGGENSTFQTLINPECYIPN+ 
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 LHGITNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRC 240
           +HGIT+RMVSRP+VPRM+ELIPILLQF+KSRQKPDGYVLLVAHNAR FDVPFLLKEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SVDIPENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSR 300
           SVDIP NWLFFDN++LARQLMKS+DSKIT++SLQALREYY+IPLVGSAHRAMSDV +LS 
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLGISDLIERSFTASDLINKKKN 333
           ILQRLTFDLKLGI DLIERSFT SDLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]

BLAST of Spg028079 vs. NCBI nr
Match: XP_023515555.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 563.5 bits (1451), Expect = 1.2e-156
Identity = 282/332 (84.94%), Postives = 308/332 (92.77%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRW 60
           MIT PMCFSILRVPKFGV TL+NLWRENFHPLNRNYGHSSWY QLGFRIYNLE GQNKRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQNKRW 60

Query: 61  TRKSVTTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAKT PS KPS+IRNEILEESVSTSC +SINK+EK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTISINKSEKNGTQKLQCCNIQET 120

Query: 121 IIENKDLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSD 180
           I ++K+LA  VTVI FDIETTGFSR  DRIVEIA +DLSGGENSTFQTLINPECYIPN+ 
Sbjct: 121 ITKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 LHGITNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRC 240
           +HGIT+RMVSRP+VPRM+ELIPILLQF+KSRQKPDGYVLLVAHNAR FDVPFLLKEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SVDIPENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSR 300
           SVDIP NWLFFDN++LARQLMKS+DSKI ++SLQALREYY+IPLVGSAHRAMSDV +LS 
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKIKKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLGISDLIERSFTASDLINKKKN 333
           ILQRLTFDLKLGI DLIERSFT SDLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]

BLAST of Spg028079 vs. NCBI nr
Match: XP_022968752.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 562.0 bits (1447), Expect = 3.4e-156
Identity = 284/331 (85.80%), Postives = 308/331 (93.05%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRW 60
           MIT  MCFSILRVPKFGV TL+NLWRENFHPLNRNYGHSSWY QLGFRIYNLE GQ+KRW
Sbjct: 1   MITASMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSVTTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRKAKT+PS KPS+IRNEILEESVSTSC VSINK+EK  TQKLQ C+IQ+T
Sbjct: 61  TRKSMTTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQET 120

Query: 121 IIENKDLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSD 180
           II++K+LA  VTVI FDIETTGFSR  DRIVEIA +DLSGGENSTFQTLINPECYIPN+ 
Sbjct: 121 IIKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 LHGITNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRC 240
           +HGIT+RMVSRP+VPRM+ELIPILLQFVKSRQKPDGYVLLVAHNAR FDVPFLLKEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRC 240

Query: 241 SVDIPENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSR 300
           SVDIP NWLFFDN++LARQLMKS+DSKIT++SLQALREYY+IPLVGSAHRAMSDV +LS 
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLGISDLIERSFTASDLINKKK 332
           ILQRLTFDLKLGI DLIERSFT SDLINKKK
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of Spg028079 vs. NCBI nr
Match: XP_022135594.1 (exonuclease DPD1, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 560.8 bits (1444), Expect = 7.7e-156
Identity = 282/332 (84.94%), Postives = 301/332 (90.66%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRW 60
           MITVPMCFSILRVPKFGVHTL+N WR NFHPLNRNYGHSSWY QL FRIYNLE GQNKRW
Sbjct: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60

Query: 61  TRKSVTTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRK K +PS KPSDIRNEILE SVSTSC VSINKTEKSETQKLQYCDIQQT
Sbjct: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120

Query: 121 IIENKDLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSD 180
             + K+L   VTVI FDIETTGFSR KDRIVEIAF+DLSGGENSTFQTLINPECYIPNS 
Sbjct: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180

Query: 181 LHGITNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRC 240
           +HGIT+RMVSRP+VPRM++LIPILLQFV SRQKPDGY+LLVAHNAR FDVPFLL EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240

Query: 241 SVDIPENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSR 300
           S DIP++WLF DNMILARQLM SSDSK++++SLQALREYY IPLVGSAHRAMSDVMSLS 
Sbjct: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300

Query: 301 ILQRLTFDLKLGISDLIERSFTASDLINKKKN 333
           ILQRLTFDLKL I DLIERSFTASDLI K K+
Sbjct: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD 332

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BLAST of Spg028079 vs. ExPASy Swiss-Prot
Match: Q682U6 (Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DPD1 PE=1 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.5e-66
Identity = 148/323 (45.82%), Postives = 212/323 (65.63%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRWTRKSV 65
           MC SI +V +  +H+  +   E  H   +N   SS    L  R  ++ DG+  RW R++V
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSV-DGK-ARWIRRNV 60

Query: 66  TTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQTIIENK 125
           +T       T  SR  S+ ++ +L  +V  + I+     E+S T+   + ++QQ + ++K
Sbjct: 61  ST------TTQGSR--SNTKSSVLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 126 DLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECY-IPNSDLHGI 185
           DL+  +TVI+ D+ETTG  R  +RI+EIA +D++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDI 245
            N MV RPEVPRMEELIPI L++V+SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PENWLFFDNMILARQLMKSSDSKI-TRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQ 305
           P NWL  D++ LAR+ MKS +  +    SL+AL +YY +   G AHRA+SDV+ LS++ Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLGISDLIERSFTASDL 327
           +LT DLKL +SDL+ R  TASD+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of Spg028079 vs. ExPASy Swiss-Prot
Match: Q895K2 (DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=polC PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-14
Identity = 66/201 (32.84%), Postives = 103/201 (51.24%), Query Frame = 0


Query: 134 IIFDIETTGFSRNKDRIVEI-AFRDLSGGENSTFQTLINPECYIPNS--DLHGITNRMVS 193
           ++FDIETTGFS   D+I+EI A +   G     + T +NPE  IP    +L GI + MV 
Sbjct: 414 VVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMVK 473

Query: 194 RPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDIPENWLF 253
             + P++EE++P  + F++         +LVAHNA  FDV F+ K       +  +  + 
Sbjct: 474 --DAPKIEEVLPKFIDFIEDS-------ILVAHNAN-FDVSFIKK-------NCKDFGIH 533

Query: 254 FDNMIL-ARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQRLTFDL 313
           F+N IL    L K    ++ R  L  + ++  IPL+ + HRA+ D  +   IL +   DL
Sbjct: 534 FNNPILDTIPLCKFLYPELKRYKLNVVAKHLGIPLL-NHHRAVEDAKTTGDILLKAFEDL 593

Query: 314 K----LGISDLIERSFTASDL 327
           K    + ++ L E  F   D+
Sbjct: 594 KDKEIMNLNMLNEEYFKNQDI 596

[Close]

BLAST of Spg028079 vs. ExPASy Swiss-Prot
Match: Q8RA32 (DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=polC PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-12
Identity = 58/189 (30.69%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 134 IIFDIETTGFSRNKDRIVEIAFRDLSGGE-NSTFQTLINPECYIPN--SDLHGITNRMVS 193
           ++FDIETTG S   D I+EI    +   +   TF+T +NP+  I +  + L GI   MV 
Sbjct: 389 VVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDESMVK 448

Query: 194 RPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDIPENWLF 253
             + P +EE++P  L+F K         +LVAHNA  FDV F+  +  +  + +    L 
Sbjct: 449 --DAPLIEEVLPKFLEFAKG-------AVLVAHNAN-FDVSFIKSKAKKLGLTVENTVL- 508

Query: 254 FDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQRLTFDL- 313
            D + L+R L +     +    L  L E++++ L+   HRA+ D  + + I  ++   L 
Sbjct: 509 -DTLELSRHLYQD----LKNYKLDTLAEFFEVKLL-HHHRAVEDAKATAEIFIKMLEKLQ 560

Query: 314 KLGISDLIE 319
           ++GI  + E
Sbjct: 569 EIGIKSVSE 560

[Close]

BLAST of Spg028079 vs. ExPASy Swiss-Prot
Match: Q8XJR3 (DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=polC PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.3e-12
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 0


Query: 134 IIFDIETTGFSRNKDRIVEIAFRDLSGGE-NSTFQTLINPECYIPN--SDLHGITNRMVS 193
           ++FDIETTGFS   D+I+EI    L  GE   +F T ++P+  IP   ++L  IT  MV+
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495

Query: 194 RPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDIPENWLF 253
               P ++E++P  ++FV       G  +LVAHNA AFDV F+ K        +      
Sbjct: 496 GQ--PTIDEVLPKFMEFV-------GNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP--V 555

Query: 254 FDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQ 304
            D + LAR L       + ++ L  + ++  I L  + HRA+ D  + + IL+
Sbjct: 556 MDTVPLARYLYPD----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591

[Close]

BLAST of Spg028079 vs. ExPASy Swiss-Prot
Match: Q8EQU6 (DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=polC PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-09
Identity = 57/177 (32.20%), Postives = 90/177 (50.85%), Query Frame = 0


Query: 132 TVIIFDIETTGFSRNKDRIVEIAFRDLSGGE-NSTFQTLINPECYIPNS--DLHGITNRM 191
           T ++FD+ETTG S   D I+E+A   + GGE    F++  NP   +  +  DL GIT+ M
Sbjct: 413 TFVVFDVETTGLSAVYDTIIELAAVKIKGGEIVDRFESFANPHHALSQTTIDLTGITDDM 472

Query: 192 VSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDIPENW 251
           V+  + P + +++       K      G  +LVAHNA +FD+ FL + F R   +   N 
Sbjct: 473 VN--DAPEVADVL-------KDFHTWMGNDILVAHNA-SFDMGFLNQGFQRIDYEKASNP 532

Query: 252 LFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQRL 306
           +  D + LAR L+     ++    L  L ++ DI L    HRA+ D  +   +L +L
Sbjct: 533 V-VDTLELARFLL----PELRNHRLNTLCKHLDIELT-QHHRAIYDAEATGYLLWKL 573

[Close]

BLAST of Spg028079 vs. ExPASy TrEMBL
Match: A0A6J1HDU6 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111461962 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 4.4e-157
Identity = 282/332 (84.94%), Postives = 309/332 (93.07%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRW 60
           MIT PMCFSILRVPKFGV TL+NLWRENFHPLNRNYGHSSWY QLGFR YNLE GQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRTYNLEGGQDKRW 60

Query: 61  TRKSVTTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAKT PS KPS+IRNEILEESVSTSC VSINK+EK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 IIENKDLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSD 180
           I+++K+LA  VTVI FDIETTGFSR  DRIVEIA +DLSGGENSTFQTLINPECYIPN+ 
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 LHGITNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRC 240
           +HGIT+RMVSRP+VPRM+ELIPILLQF+KSRQKPDGYVLLVAHNAR FDVPFLLKEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SVDIPENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSR 300
           SVDIP NWLFFDN++LARQLMKS+DSKIT++SLQALREYY+IPLVGSAHRAMSDV +LS 
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLGISDLIERSFTASDLINKKKN 333
           ILQRLTFDLKLGI DLIERSFT SDLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]

BLAST of Spg028079 vs. ExPASy TrEMBL
Match: A0A6J1HUD7 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467897 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.7e-156
Identity = 284/331 (85.80%), Postives = 308/331 (93.05%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRW 60
           MIT  MCFSILRVPKFGV TL+NLWRENFHPLNRNYGHSSWY QLGFRIYNLE GQ+KRW
Sbjct: 1   MITASMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSVTTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRKAKT+PS KPS+IRNEILEESVSTSC VSINK+EK  TQKLQ C+IQ+T
Sbjct: 61  TRKSMTTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQET 120

Query: 121 IIENKDLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSD 180
           II++K+LA  VTVI FDIETTGFSR  DRIVEIA +DLSGGENSTFQTLINPECYIPN+ 
Sbjct: 121 IIKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 LHGITNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRC 240
           +HGIT+RMVSRP+VPRM+ELIPILLQFVKSRQKPDGYVLLVAHNAR FDVPFLLKEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRC 240

Query: 241 SVDIPENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSR 300
           SVDIP NWLFFDN++LARQLMKS+DSKIT++SLQALREYY+IPLVGSAHRAMSDV +LS 
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLGISDLIERSFTASDLINKKK 332
           ILQRLTFDLKLGI DLIERSFT SDLINKKK
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of Spg028079 vs. ExPASy TrEMBL
Match: A0A6J1C1V8 (exonuclease DPD1, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007515 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 3.7e-156
Identity = 282/332 (84.94%), Postives = 301/332 (90.66%), Query Frame = 0


Query: 1   MITVPMCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRW 60
           MITVPMCFSILRVPKFGVHTL+N WR NFHPLNRNYGHSSWY QL FRIYNLE GQNKRW
Sbjct: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60

Query: 61  TRKSVTTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRK K +PS KPSDIRNEILE SVSTSC VSINKTEKSETQKLQYCDIQQT
Sbjct: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120

Query: 121 IIENKDLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSD 180
             + K+L   VTVI FDIETTGFSR KDRIVEIAF+DLSGGENSTFQTLINPECYIPNS 
Sbjct: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180

Query: 181 LHGITNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRC 240
           +HGIT+RMVSRP+VPRM++LIPILLQFV SRQKPDGY+LLVAHNAR FDVPFLL EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240

Query: 241 SVDIPENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSR 300
           S DIP++WLF DNMILARQLM SSDSK++++SLQALREYY IPLVGSAHRAMSDVMSLS 
Sbjct: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300

Query: 301 ILQRLTFDLKLGISDLIERSFTASDLINKKKN 333
           ILQRLTFDLKL I DLIERSFTASDLI K K+
Sbjct: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD 332

[Close]

BLAST of Spg028079 vs. ExPASy TrEMBL
Match: A0A0A0LVY3 (Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 6.4e-140
Identity = 254/326 (77.91%), Postives = 283/326 (86.81%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRWTRKSV 65
           MC SI R PK+GV  L+NLWRENFHPLNRN+GH+ WY QL FRIYNLE G+NKRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 66  TTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQTIIENK 125
           TTKAG KAKT+PS KP++IRNEIL+ES+  SC V+INK+EKSETQKLQYCDIQ TII++K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESMLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 126 DLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSDLHGIT 185
           + A  VTVI FDIETTGFSRN DRIVEIAF+DLSGGENSTFQTLINP+CYI NS++HGI+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 186 NRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDIP 245
           NRMV  P VPRM+ELIPI+LQFVKSRQKP GYVLLVAHNAR FDVPFLL EFSR SVDIP
Sbjct: 181 NRMVDSPSVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 246 ENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQRL 305
            NWLFFD M LARQLMK SDSKIT+++LQAL EYY I L G AHRA+SDV  LS ILQRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 306 TFDLKLGISDLIERSFTASDLINKKK 332
           TFDLKL ISDL+ER+FT  DLINKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKK 326

[Close]

BLAST of Spg028079 vs. ExPASy TrEMBL
Match: A0A0N9LRH7 (Exonuclease DPD1 OS=Cucumis sativus OX=3659 GN=DPD1 PE=2 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.4e-139
Identity = 254/326 (77.91%), Postives = 282/326 (86.50%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRWTRKSV 65
           MC SI R PK+GV  L+NLWRENFHPLNRN+GH+ WY QL FRIYNLE G+NKRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 66  TTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQTIIENK 125
           TTKAG KAKT+PS KP++IRNEIL+ESV  SC V+INK+EKSETQKLQYCDIQ TII++K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESVLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 126 DLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECYIPNSDLHGIT 185
           + A  VTVI FDIETTGFSRN DRIVEIAF+DLSGGENSTFQTLINP+CYI NS++HGI+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 186 NRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDIP 245
           NRMV  P VP M+ELIPI+LQFVKSRQKP GYVLLVAHNAR FDVPFLL EFSR SVDIP
Sbjct: 181 NRMVDSPSVPSMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 246 ENWLFFDNMILARQLMKSSDSKITRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQRL 305
            NWLFFD M LARQLMK SDSKIT+++LQAL EYY I L G AHRA+SDV  LS ILQRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 306 TFDLKLGISDLIERSFTASDLINKKK 332
           TFDLKL ISDL+ER+FT  DLINKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKK 326

[Close]

BLAST of Spg028079 vs. TAIR 10
Match: AT5G26940.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 1.1e-67
Identity = 148/323 (45.82%), Postives = 212/323 (65.63%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRWTRKSV 65
           MC SI +V +  +H+  +   E  H   +N   SS    L  R  ++ DG+  RW R++V
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSV-DGK-ARWIRRNV 60

Query: 66  TTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQTIIENK 125
           +T       T  SR  S+ ++ +L  +V  + I+     E+S T+   + ++QQ + ++K
Sbjct: 61  ST------TTQGSR--SNTKSSVLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 126 DLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECY-IPNSDLHGI 185
           DL+  +TVI+ D+ETTG  R  +RI+EIA +D++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDI 245
            N MV RPEVPRMEELIPI L++V+SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PENWLFFDNMILARQLMKSSDSKI-TRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQ 305
           P NWL  D++ LAR+ MKS +  +    SL+AL +YY +   G AHRA+SDV+ LS++ Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLGISDLIERSFTASDL 327
           +LT DLKL +SDL+ R  TASD+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of Spg028079 vs. TAIR 10
Match: AT5G26940.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 1.1e-67
Identity = 148/323 (45.82%), Postives = 212/323 (65.63%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRWTRKSV 65
           MC SI +V +  +H+  +   E  H   +N   SS    L  R  ++ DG+  RW R++V
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSV-DGK-ARWIRRNV 60

Query: 66  TTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQTIIENK 125
           +T       T  SR  S+ ++ +L  +V  + I+     E+S T+   + ++QQ + ++K
Sbjct: 61  ST------TTQGSR--SNTKSSVLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 126 DLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECY-IPNSDLHGI 185
           DL+  +TVI+ D+ETTG  R  +RI+EIA +D++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDI 245
            N MV RPEVPRMEELIPI L++V+SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PENWLFFDNMILARQLMKSSDSKI-TRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQ 305
           P NWL  D++ LAR+ MKS +  +    SL+AL +YY +   G AHRA+SDV+ LS++ Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLGISDLIERSFTASDL 327
           +LT DLKL +SDL+ R  TASD+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of Spg028079 vs. TAIR 10
Match: AT5G26940.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 1.1e-67
Identity = 148/323 (45.82%), Postives = 212/323 (65.63%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRWTRKSV 65
           MC SI +V +  +H+  +   E  H   +N   SS    L  R  ++ DG+  RW R++V
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSV-DGK-ARWIRRNV 60

Query: 66  TTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQTIIENK 125
           +T       T  SR  S+ ++ +L  +V  + I+     E+S T+   + ++QQ + ++K
Sbjct: 61  ST------TTQGSR--SNTKSSVLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 126 DLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECY-IPNSDLHGI 185
           DL+  +TVI+ D+ETTG  R  +RI+EIA +D++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDI 245
            N MV RPEVPRMEELIPI L++V+SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PENWLFFDNMILARQLMKSSDSKI-TRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQ 305
           P NWL  D++ LAR+ MKS +  +    SL+AL +YY +   G AHRA+SDV+ LS++ Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLGISDLIERSFTASDL 327
           +LT DLKL +SDL+ R  TASD+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of Spg028079 vs. TAIR 10
Match: AT5G26940.4 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 1.1e-67
Identity = 148/323 (45.82%), Postives = 212/323 (65.63%), Query Frame = 0


Query: 6   MCFSILRVPKFGVHTLSNLWRENFHPLNRNYGHSSWYGQLGFRIYNLEDGQNKRWTRKSV 65
           MC SI +V +  +H+  +   E  H   +N   SS    L  R  ++ DG+  RW R++V
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSV-DGK-ARWIRRNV 60

Query: 66  TTKAGRKAKTHPSRKPSDIRNEILEESVSTSCIVSINKTEKSETQKLQYCDIQQTIIENK 125
           +T       T  SR  S+ ++ +L  +V  + I+     E+S T+   + ++QQ + ++K
Sbjct: 61  ST------TTQGSR--SNTKSSVLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 126 DLACRVTVIIFDIETTGFSRNKDRIVEIAFRDLSGGENSTFQTLINPECY-IPNSDLHGI 185
           DL+  +TVI+ D+ETTG  R  +RI+EIA +D++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPEVPRMEELIPILLQFVKSRQKPDGYVLLVAHNARAFDVPFLLKEFSRCSVDI 245
            N MV RPEVPRMEELIPI L++V+SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PENWLFFDNMILARQLMKSSDSKI-TRMSLQALREYYDIPLVGSAHRAMSDVMSLSRILQ 305
           P NWL  D++ LAR+ MKS +  +    SL+AL +YY +   G AHRA+SDV+ LS++ Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLGISDLIERSFTASDL 327
           +LT DLKL +SDL+ R  TASD+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

The following BLAST results are available for this feature:

BLAST of Spg028079 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590475.1	2.4e-157	85.24	Exonuclease DPD1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma s...	[more]
XP_022961373.1	9.0e-157	84.94	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022961374...	[more]
XP_023515555.1	1.2e-156	84.94	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022968752.1	3.4e-156	85.80	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1...	[more]
XP_022135594.1	7.7e-156	84.94	exonuclease DPD1, chloroplastic/mitochondrial [Momordica charantia]	[more]

BLAST of Spg028079 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682U6	1.5e-66	45.82	Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q895K2	4.0e-14	32.84	DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) ...	[more]
Q8RA32	6.4e-12	30.69	DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongens...	[more]
Q8XJR3	8.3e-12	33.53	DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=...	[more]
Q8EQU6	3.0e-09	32.20	DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP...	[more]

BLAST of Spg028079 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDU6	4.4e-157	84.94	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HUD7	1.7e-156	85.80	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1C1V8	3.7e-156	84.94	exonuclease DPD1, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0LVY3	6.4e-140	77.91	Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080...	[more]
A0A0N9LRH7	1.4e-139	77.91	Exonuclease DPD1 OS=Cucumis sativus OX=3659 GN=DPD1 PE=2 SV=1	[more]

BLAST of Spg028079 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26940.1	1.1e-67	45.82	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.2	1.1e-67	45.82	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.3	1.1e-67	45.82	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.4	1.1e-67	45.82	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 132..311 e-value: 3.2E-30 score: 116.4
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 134..299 e-value: 7.4E-23 score: 81.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 131..311 e-value: 5.3E-45 score: 155.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..82
None	No IPR available	PANTHER	PTHR13058:SF23	POLYMERASE III POLC-TYPE, PUTATIVE ISOFORM 1-RELATED	coord: 3..329
None	No IPR available	CDD	cd06127	DEDDh	coord: 134..303 e-value: 2.91409E-41 score: 139.743
IPR040393	Three-prime repair exonuclease 1/2	PANTHER	PTHR13058	THREE PRIME REPAIR EXONUCLEASE 1, 2	coord: 3..329
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 132..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028079.1	Spg028079.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000738	DNA catabolic process, exonucleolytic
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008296	3'-5'-exodeoxyribonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008408	3'-5' exonuclease activity