Spg027996 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027996
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold2: 41071902 .. 41073464 (+)
RNA-Seq ExpressionSpg027996
SyntenySpg027996
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTTAAAAGAAGAAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGGAAAATGGAAGAAAAAAAAAAAGGAAACAAATCAGCCAAAGGGAAATGAAAACAAAAAAAAAAAAAAGAAAAAGAAAAGAAAGGAAATGGGAATGGACAGCAAAAATTCCACCACCGACAAAGCTTTACTTCAGCTCATTCCAGCCACATTTCTCAACATTTTCCAACCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGATTTTCGCGGTTTTGAGGTTGAAGAAGATAGGAAATAGTTCAAGCAAAGGCAGCCATAGCAGAAGCTGAGTTCAACCTGTCAACCTCTGGTTTTTGATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGATTTTCTTGAACGTTAGTCCATTTCATAACAAATTTCATGAAGGAAGCTTGAGCTAAATATGATGAGAAGTTCATGGTTTTTGAAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCGGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATCCGTGAGAAAAAAATGACTTGAAGTAGGTTTAATTTTAGGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGATGCATTTCTGGAAATCTCGGTTGGGAATCTCGTTTTCATTTCTTCAGGTAAGTTGTATAGTGTTCGAAAATGAAGAGTTTGATGTATAGTACATTAATTGTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAAGTAGAATGTGAAGTGTGATTTTTAATTCAAGTGTTTAGAATTCATGAGCATGGAAGAATAAGACTATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAAGTCGAGTCTACAGACCAGGAAACTATCTAAGACTGTGAGTGACAAAACGAATTTCGAAAATTGTTTCCAAACGGTTGCACATGTTTAGATGTTTTACATGCTTTCTATGAATGATACACGGTTTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGGTTTATAAATGAGCACGTGATTATTGAGTTTCTGAAAAATAGTTGAAACGACATCCTTTTAAGCCAAACATGTATTAGCAAGAATTATTTAAAGATTTTCGGTTTTTTTTTCCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGTGATTTTCTGAGATTTCTATTTACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACAGTGTGCACACAGGTTATGTTCCGTTGTTGACGTTGAGTGTACTCAGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG

mRNA sequence

ATGGTTTTTGAAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCGGAAGCTCTATTTGGCCAAGAGGAAATAAGTCGAGTCTACAGACCAGGAAACTATCTAAGACTTGTGCACACAGGTTATGTTCCGTTGTTGACGTTGAGTGTACTCAGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG

Coding sequence (CDS)

ATGGTTTTTGAAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCGGAAGCTCTATTTGGCCAAGAGGAAATAAGTCGAGTCTACAGACCAGGAAACTATCTAAGACTTGTGCACACAGGTTATGTTCCGTTGTTGACGTTGAGTGTACTCAGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG

Protein sequence

MVFEMENRAQDFRAKQEDLWFSLVFRAFWGVQVESEALFGQEEISRVYRPGNYLRLVHTGYVPLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS
Homology
[Close]
BLAST of Spg027996 vs. NCBI nr
Match: KAA0033241.1 (hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK20418.1 hypothetical protein E5676_scaffold590G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 5.8e-11
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 57 VHTGYVPLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS 99
          V+TGYV LLTL+VL DNDA+VSAGR PLRQR+WECWA PTTS
Sbjct: 28 VYTGYVSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]
BLAST of Spg027996 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 63  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS 99
           PL TLSVLSDNDAVVSAG+APLRQRRWEC  GPTTS
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Spg027996 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 63  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS 99
           PL TLSVLSDNDAVVSAG+APLRQRRWEC  GPTTS
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Spg027996 vs. NCBI nr
Match: KAA0040296.1 (hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 64  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS 99
           L TLSVL +NDA VSAGR PLRQRRWEC  GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237

[Close]
BLAST of Spg027996 vs. NCBI nr
Match: TYK27262.1 (hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 64  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS 99
           L TLSVL +NDA VSAGR PLRQRRWEC  GPTTS
Sbjct: 262 LSTLSVLRNNDAAVSAGRIPLRQRRWECRTGPTTS 296

[Close]
BLAST of Spg027996 vs. ExPASy TrEMBL
Match: A0A5A7SUV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00130 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 57 VHTGYVPLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS 99
          V+TGYV LLTL+VL DNDA+VSAGR PLRQR+WECWA PTTS
Sbjct: 28 VYTGYVSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]
BLAST of Spg027996 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 63  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS 99
           PL TLSVLSDNDAVVSAG+APLRQRRWEC  GPTTS
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Spg027996 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 63  PLLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS 99
           PL TLSVLSDNDAVVSAG+APLRQRRWEC  GPTTS
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Spg027996 vs. ExPASy TrEMBL
Match: A0A5A7TDY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00310 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.1e-06
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 64  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS 99
           L TLSVL +NDA VSAGR PLRQRRWEC  GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237

[Close]
BLAST of Spg027996 vs. ExPASy TrEMBL
Match: A0A5D3DUS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00290 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.9e-06
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 64  LLTLSVLSDNDAVVSAGRAPLRQRRWECWAGPTTS 99
           L TLSVL +NDA VSAGR PLRQRRWEC  GPTTS
Sbjct: 262 LSTLSVLRNNDAAVSAGRIPLRQRRWECRTGPTTS 296

The following BLAST results are available for this feature:
BLAST of Spg027996 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033241.15.8e-1180.95hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK2041... [more]
KAA0037581.14.6e-0888.89reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.14.6e-0888.89reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0040296.11.3e-0580.00hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa][more]
TYK27262.11.6e-0580.00hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa][more]
BLAST of Spg027996 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027996 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SUV22.8e-1180.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BTP32.2e-0888.89Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M62.2e-0888.89Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7TDY36.1e-0680.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DUS77.9e-0680.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg027996 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027996.1Spg027996.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding