Spg027988 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg027988
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	50S ribosomal protein L18
Location	scaffold2: 43131830 .. 43133301 (+)
RNA-Seq Expression	Spg027988
Synteny	Spg027988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAAATAAGCTAAATAGAACTAGAGGAAGAGCAAAAGGGAAATTAGAAAAATGAAAACTTAAACCCTATTCCCTGCCCTTCCTCTTCATTTCTTGTTTGATTTCTCTGCCGCAGCCGCTCGCCGGAACGCTCCACCGCCAGATTTCTTTCTTCTATGCTGCAACCTCTCGCCGCCGCCAACCCCTGTCTTTCATCGAGGTCTGCCCAGATCTATCTCTTTTCTTCTTCTTTTTTTCTCTTGTTCTTCCATTCAACCAACTTCGAAATTGGGTAAATTTGGAATTAATTTCATGAAATGATTTCAAATCCGTTCTGATTTGAAATCCTTCTAACGGAGGGTAAGATTACTGTCATTTCTAGATGCATCTGATCCATCTAATGCCTTACTGACCAATTTTTTTGTTAATTTTTTTAATACTTCTTATTGGGTTCAGTCGGATGCTAGAACGGTAGGAAGTATAGGATTGTAAAGGGGCATTGTGGCCATGATTGCGAGTACCAATTTTCAATTTTTAATCTCAATTTGGGGGAATTATTTGAGGGGCTTGGACAAAGTTGCTAGCCATCCTCTATTGTTGAATGCATGTGAGAAAAGTTAAAAGTAGTATTTTGAACTTGGATTTATGTTTATTAGGGTAGGGACAAACAGATTTTGAACCTATAGGCAACCACTTTGCAGTGGCCATACCATAATGAATAAATTTTCCTCAATTTGCAAATTGAAAATTTGAAGATTAGAAATTTGTCACAGTATAAGCTCAAATCAAGTTCATTGGTTTGGTTGTCCATTTTCACTAACCAATGATATTTGTTTGGTTATTGGTTTAGCCAAAAGAATCGGAACAACCGAACTAATATATACCCGTGTGAATATTTTTCAAGAACAATTATCTTTTATATCTGTTTGTAATGATAGTATGTCAAAACCATTGCTCATTGCCATTATTATGAAAGTTATGTAAGGAATATTAAAGAATGAAAACAGGGGAAACAATAGTAGTTAAACAAATGTATTACGGAACTCACGAAGTGATAGCTTAGCTTAGCTTGATAAGGTTGAAGATCCTGAGATTCATCTTTGTTTGTGTTGTTTAGAGTATAATTTAATTGGACTAGCCAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACGAACAAGTATGTGAGCGCCCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCGCAAGAGAAGGCGCTGCGGTCGAGCATGGAGTCAACGAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGTGTTAAGCTGCTTTGA

mRNA sequence

ATGCTGCAACCTCTCGCCGCCGCCAACCCCTGTCTTTCATCGAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACGAACAAGTATGTGAGCGCCCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCGCAAGAGAAGGCGCTGCGGTCGAGCATGGAGTCAACGAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGTGTTAAGCTGCTTTGA

Coding sequence (CDS)

ATGCTGCAACCTCTCGCCGCCGCCAACCCCTGTCTTTCATCGAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACGAACAAGTATGTGAGCGCCCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCGCAAGAGAAGGCGCTGCGGTCGAGCATGGAGTCAACGAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGTGTTAAGCTGCTTTGA

Protein sequence

MLQPLAAANPCLSSREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL

Homology

[Close]

BLAST of Spg027988 vs. NCBI nr
Match: KAG6590442.1 (hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023978.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 3.4e-51
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Spg027988 vs. NCBI nr
Match: XP_022961444.1 (uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 uncharacterized protein LOC111462025 [Cucurbita moschata])

HSP 1 Score: 211.5 bits (537), Expect = 4.5e-51
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Spg027988 vs. NCBI nr
Match: XP_022968817.1 (uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968820.1 uncharacterized protein LOC111467940 [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 9.9e-51
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Spg027988 vs. NCBI nr
Match: XP_023515963.1 (uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-50
Identity = 110/114 (96.49%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPPPVRPPRLTQYLKPY+LKMHFTNKYVSAQVIHS+TATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYILKMHFTNKYVSAQVIHSKTATVASAASSQEKALRSSMEST 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Spg027988 vs. NCBI nr
Match: XP_022970166.1 (uncharacterized protein LOC111469142 [Cucurbita maxima] >XP_022970175.1 uncharacterized protein LOC111469142 [Cucurbita maxima])

HSP 1 Score: 208.0 bits (528), Expect = 4.9e-50
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+KAV+DSVREAG+KLL
Sbjct: 61  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 114

[Close]

BLAST of Spg027988 vs. ExPASy Swiss-Prot
Match: A8IAP8 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rplR PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-10
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 37  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 96
           L +H T+K++ AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 97  GIPAVCVHLKREQKYHGKVKAVVDSVREAGVK 129
           G+ AV V  +    YHG+VKA+ +  RE G++
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]

BLAST of Spg027988 vs. ExPASy Swiss-Prot
Match: P52863 (50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.8e-10
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 37  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 96
           L +H T ++V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 97  GIPAVCVHLKREQKYHGKVKAVVDSVREAGVK 129
           G+  V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of Spg027988 vs. ExPASy Swiss-Prot
Match: B7VLE1 (50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 37  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 96
           L +H T ++V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVISANGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAVAERALEK 85

Query: 97  GIPAVCVHLKREQKYHGKVKAVVDSVREAGVK 129
           G+ +V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVASVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of Spg027988 vs. ExPASy Swiss-Prot
Match: B6EPU1 (50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 37  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 96
           L +H T ++  AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 97  GIPAVCVHLKREQKYHGKVKAVVDSVREAGVK 129
           GI  V       Q YHG+V A+ DS REAG+K
Sbjct: 86  GITNVAFDRSGFQ-YHGRVAALADSAREAGLK 116

[Close]

BLAST of Spg027988 vs. ExPASy Swiss-Prot
Match: A7MWH4 (50S ribosomal protein L18 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=338187 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 37  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 96
           L +H T ++V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNVDAAKAVGKAVAERALEK 85

Query: 97  GIPAVCVHLKREQKYHGKVKAVVDSVREAGVK 129
           G+ AV       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVTAVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of Spg027988 vs. ExPASy TrEMBL
Match: A0A6J1HE21 (uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC111462025 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.2e-51
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Spg027988 vs. ExPASy TrEMBL
Match: A0A6J1I0R8 (uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.8e-51
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Spg027988 vs. ExPASy TrEMBL
Match: A0A6J1HZV8 (uncharacterized protein LOC111469142 OS=Cucurbita maxima OX=3661 GN=LOC111469142 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-50
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+KAV+DSVREAG+KLL
Sbjct: 61  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 114

[Close]

BLAST of Spg027988 vs. ExPASy TrEMBL
Match: A0A5D3DYC1 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00840 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.3e-50
Identity = 108/114 (94.74%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAV+DSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Spg027988 vs. ExPASy TrEMBL
Match: A0A6J1CWR7 (uncharacterized protein LOC111015286 OS=Momordica charantia OX=3673 GN=LOC111015286 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.3e-50
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR+SMEST
Sbjct: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Spg027988 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 174.1 bits (440), Expect = 7.4e-44
Identity = 91/114 (79.82%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 17  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 76
           MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 77  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKLL 131
           RDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVKAV+DSVREAGVKLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]

BLAST of Spg027988 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 61.2 bits (147), Expect = 6.9e-10
Identity = 31/101 (30.69%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 27  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIG 86
           R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R+++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 87  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGV 128
           KL+ ER +   + AV    ++ ++  GK+  V+D+++E G+
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of Spg027988 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 35/111 (31.53%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 32  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLL 91
           LK YVL++  + KY++A V+      + + AS+ E  +++S+E  R  +  AAA +G++L
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 92  GERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVVDSVREAGVKLL 131
             RL ++G+       +   +K+E +  G     KV AV++S+R  GV L+
Sbjct: 64  AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114

[Close]

BLAST of Spg027988 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 45.1 bits (105), Expect = 5.2e-05
Identity = 30/96 (31.25%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 34  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL 93
           P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R 
Sbjct: 197 PFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAVLAQRS 256

Query: 94  LLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGVKL 130
           L   I  V    ++  K  GK++ V+ ++ + GV +
Sbjct: 257 LEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNV 292

The following BLAST results are available for this feature:

BLAST of Spg027988 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590442.1	3.4e-51	98.25	hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961444.1	4.5e-51	98.25	uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 unchar...	[more]
XP_022968817.1	9.9e-51	97.37	uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharac...	[more]
XP_023515963.1	1.3e-50	96.49	uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]	[more]
XP_022970166.1	4.9e-50	94.74	uncharacterized protein LOC111469142 [Cucurbita maxima] >XP_022970175.1 uncharac...	[more]

BLAST of Spg027988 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8IAP8	5.2e-10	44.57	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
P52863	6.8e-10	44.57	50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1	[more]
B7VLE1	1.2e-09	43.48	50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR ...	[more]
B6EPU1	1.5e-09	45.65	50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 G...	[more]
A7MWH4	1.5e-09	44.57	50S ribosomal protein L18 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX...	[more]

BLAST of Spg027988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HE21	2.2e-51	98.25	uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A6J1I0R8	4.8e-51	97.37	uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940...	[more]
A0A6J1HZV8	2.4e-50	94.74	uncharacterized protein LOC111469142 OS=Cucurbita maxima OX=3661 GN=LOC111469142...	[more]
A0A5D3DYC1	5.3e-50	94.74	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1CWR7	5.3e-50	95.61	uncharacterized protein LOC111015286 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Spg027988 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27820.1	7.4e-44	79.82	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	6.9e-10	30.69	Ribosomal L18p/L5e family protein	[more]
AT3G45020.1	2.3e-05	31.53	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	5.2e-05	31.25	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 36..129 e-value: 4.1E-17 score: 62.6
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 17..130
None	No IPR available	GENE3D	3.30.420.100		coord: 26..129 e-value: 8.0E-25 score: 89.5
None	No IPR available	PANTHER	PTHR12899:SF6	OS03G0694800 PROTEIN	coord: 17..130
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 31..127 e-value: 8.93198E-27 score: 93.7587
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 26..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg027988.1	Spg027988.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome