Spg027572 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg027572
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold11: 3479829 .. 3481685 (+)
RNA-Seq Expression	Spg027572
Synteny	Spg027572

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGACTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGGAGGTCAAAACCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGACGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTAGACATGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAACGGTGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTGATGCGTTGATCGAGTCTGATAGTTCAAACATCCCGACCTCTAAGGCATTCACATGTGCTTCGTGTTGTATGTCTATAGGATTTTCTGATGAAGATTTGTTGTTAGGGTCAAAGCCTCACAATAGAACTTTATTCGTCTCGGGATACATCCGAGAACAGAAAGTTAGTCGGATCCTCATTGATGATGGATCAGCTGTCAACATAATGCCTAAGTCAACCATGAAGCAGTTAGGCATCTCGATGGGAGAACTATCAAACAGTAAGTTGGTGATTCAAGGTTTCAATCAAGGGGGACAACGAGCGATTTGCATGATACGCCTCGAGCTCATCATTGGGGATTGAAGGCCGATACTTTGTTTCATGTTATAGATTCCAAGACCACTTATAAGCTGCTATTAGGTCGCCCTTGGATCCATGGCAATAGAGTGATAACTTCTACATTGCACCAGTGTTTTAAATTTTATCAAGATGGCATTATGAAAGTTGAGGCTGACACTAGCCCATTCATAGAAGTTGAATCCCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACACAGGGGAAGTTATACCTGCAGAAATCCCCTTGATAAAAAAGAATGACAAGCTCAATTTAGAGCCACAAGCAGATGCAAGGAAGGAAGCTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCCCAGCATAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAGCATAAAGGTCGGTGACGTTGAAATTCTGAAGGAAAGTTTCACTACGCCTCTTACAATGATCACAAAGCAAGAGGTTAAGAAACCTGAGGATGACCAGATAAAATCGGTTTTGCCTGACAAACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAAGATTTTTGATGAAAGATCTGAGCTCTCTACAACACAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGCCCGAGCCAGTTAGCATAACAAGAAAAGGGAAGGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTTCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGTTCATTGGGAGAGAAGAGAGTACACTTTCAACTCCGGATATCACG

mRNA sequence

ATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGACTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGGAGGTCAAAACCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGACGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTAGACATGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAACGGTGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAACTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCCCAGCATAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAGCATAAAGGGAAGGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTTCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGTTCATTGGGAGAGAAGAGAGTACACTTTCAACTCCGGATATCACG

Coding sequence (CDS)

ATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGACTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGGAGGTCAAAACCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGACGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTAGACATGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAACGGTGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAACTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCCCAGCATAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAGCATAAAGGGAAGGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTTCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGTTCATTGGGAGAGAAGAGAGTACACTTTCAACTCCGGATATCACG

Protein sequence

MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKTVEDVKASDLKKGETSTSLVKPKVVEDEKCSPVLRYVPLSQHKKGESPFTECPKSIKGRKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARASVFQRIIVNETEEESSQPTNSSTRSSVFRRLSMFIGREESTLSTPDIT

Homology

[Close]

BLAST of Spg027572 vs. NCBI nr
Match: KAA0056780.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97603.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 3.7e-21
Identity = 63/140 (45.00%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 5   QEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVV 64
           QEK  SIE ++E WT+V RRKK+K +  +KE R +R+ +R  K+Q+ K KKK+++ K + 
Sbjct: 93  QEKERSIEKDDEGWTIVTRRKKRKSTLIQKEPRFYRNYRRGNKTQKNKKKKKTQKLKLIN 152

Query: 65  EKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPG 124
           E+ +DF      +TLA +FP RFL D Q E  E+V CH +D +E++ +P  S E      
Sbjct: 153 EEDKDFPRTQRLVTLANFFPTRFLCDHQDENPEVVACHAIDAIEEESIPLRSLEEEGVSK 212

Query: 125 DLSSFSIKDLLSLPQEAKTV 145
           DL  F++ DLLSLPQE KT+
Sbjct: 213 DLLRFNVDDLLSLPQETKTI 232

[Close]

BLAST of Spg027572 vs. NCBI nr
Match: KAA0046265.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18936.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-21
Identity = 62/144 (43.06%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 1   MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRS 60
           ++ S  K  SIE++NE W +V RR K+K +  +KES  +R+ +R  K+Q+ K KKK+R+ 
Sbjct: 152 LEDSHVKERSIEEDNEGWIVVTRRMKRKSTLTQKESSFYRNYRRRNKAQKNKKKKKTRKP 211

Query: 61  KPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETV 120
           K V E+ +DF  P   +T+A+ FP RFL D Q E  E++TCH ++  E++ +P+ S E  
Sbjct: 212 KLVHEEDKDFPQPQRLVTMADLFPTRFLCDHQDENPEVITCHTINATEEESIPSRSLEEE 271

Query: 121 ASPGDLSSFSIKDLLSLPQEAKTV 145
               +LS F++ DLLSLPQE KT+
Sbjct: 272 GMSKNLSRFNMDDLLSLPQETKTI 295

[Close]

BLAST of Spg027572 vs. NCBI nr
Match: KAA0039557.1 (uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK01742.1 uncharacterized protein E5676_scaffold775G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-20
Identity = 61/141 (43.26%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 4   SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPV 63
           SQEK   IE+++E WT+V RRKK+K +  +KE R +R+ ++  K+Q+ K KKK+R+ K +
Sbjct: 116 SQEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLM 175

Query: 64  VEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASP 123
            E+ +DF      +TLA++FP RFL D Q E   +V CH ++ +E++++P  S E     
Sbjct: 176 HEEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVS 235

Query: 124 GDLSSFSIKDLLSLPQEAKTV 145
            DLS F++ DLLSLPQE K +
Sbjct: 236 KDLSRFNVNDLLSLPQETKII 256

[Close]

BLAST of Spg027572 vs. NCBI nr
Match: KAA0039557.1 (uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK01742.1 uncharacterized protein E5676_scaffold775G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-07
Identity = 60/163 (36.81%), Postives = 79/163 (48.47%), Query Frame = 0


Query: 136 SLPQ-EAKTVEDVKASDL--KKG---ETSTSLVKPKVVEDEKCSPVLR-------YVPLS 195
           SLPQ   K   D KA  L  K G    T T     K+ E  K S   +        +P+S
Sbjct: 542 SLPQRRTKDGFDPKAYKLMAKAGYDFTTHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMS 601

Query: 196 QHKKGESPFTECPKSIKGR-KVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARAS 255
           +   G         + KG+ KV D NHITV+EVD  +E E   QR S F RI P VAR  
Sbjct: 602 RKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEYEGDSQRTSAFDRISPHVARTP 661

Query: 256 VFQRIIVNETEEESSQPTNSSTRSSVFRRLSMFIGREESTLST 285
           VF+R+ + E E +  Q T++  R SVF+RL++    E+    T
Sbjct: 662 VFERLSMTEAERKDHQSTSNLDRRSVFQRLTITFKEEKGICQT 704

HSP 2 Score: 109.8 bits (273), Expect = 4.1e-20
Identity = 69/169 (40.83%), Postives = 98/169 (57.99%), Query Frame = 0


Query: 4   SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPV 63
           S+E+   I+D +E WTLV RRKK+KQ++++KESR +R+ +R  KSQR+K +K  R+  P+
Sbjct: 162 SKEEEKQIDDADEGWTLVTRRKKRKQNFSQKESRSYREYRRTGKSQRRKARKNLRKLLPI 221

Query: 64  VEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASP 123
           +E+SE+      PITL ++F   F       ++EIV CH +   +DD  P++S E    P
Sbjct: 222 IEESEELPRSRQPITLKDFFSENF-------SMEIVPCHTIGTTDDDTFPSNSIEVTPKP 281

Query: 124 GDLSSFSIKDLLSLPQEAKTVEDVKASDLKKGETSTSLVKPKVVEDEKC 173
            DL S  I DLL+L QEAK   D     LK  + ST    P    D  C
Sbjct: 282 EDLLSLGINDLLTLSQEAK---DTIMEILKNDDVSTIATSPTKAYDSYC 320

[Close]

BLAST of Spg027572 vs. NCBI nr
Match: KAA0031665.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04446.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 6.9e-20
Identity = 62/144 (43.06%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 1   MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRS 60
           ++ S+EK   IE+++E W +V RRKK+K +   KES  +R+ +R  K+Q+ K KKK+R+ 
Sbjct: 189 LEDSREKERPIEEDDEGWIVVTRRKKRKSTLIEKESCFYRNYRRGNKAQKNKKKKKTRKL 248

Query: 61  KPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETV 120
           K V E+ +DF  P   +TLA++FP RFL D Q E   +V CH ++++E++ +P  S E  
Sbjct: 249 KLVHEEDKDFPRPQRLVTLADFFPTRFLCDHQDENPGVVACHAINVMEEESIPLRSLEEE 308

Query: 121 ASPGDLSSFSIKDLLSLPQEAKTV 145
                LS F++ DLLSLPQE KT+
Sbjct: 309 EVSKYLSRFNVDDLLSLPQETKTI 332

[Close]

BLAST of Spg027572 vs. ExPASy TrEMBL
Match: A0A5D3BE72 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00360 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-21
Identity = 63/140 (45.00%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 5   QEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVV 64
           QEK  SIE ++E WT+V RRKK+K +  +KE R +R+ +R  K+Q+ K KKK+++ K + 
Sbjct: 93  QEKERSIEKDDEGWTIVTRRKKRKSTLIQKEPRFYRNYRRGNKTQKNKKKKKTQKLKLIN 152

Query: 65  EKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPG 124
           E+ +DF      +TLA +FP RFL D Q E  E+V CH +D +E++ +P  S E      
Sbjct: 153 EEDKDFPRTQRLVTLANFFPTRFLCDHQDENPEVVACHAIDAIEEESIPLRSLEEEGVSK 212

Query: 125 DLSSFSIKDLLSLPQEAKTV 145
           DL  F++ DLLSLPQE KT+
Sbjct: 213 DLLRFNVDDLLSLPQETKTI 232

[Close]

BLAST of Spg027572 vs. ExPASy TrEMBL
Match: A0A5A7TY01 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00180 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-21
Identity = 62/144 (43.06%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 1   MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRS 60
           ++ S  K  SIE++NE W +V RR K+K +  +KES  +R+ +R  K+Q+ K KKK+R+ 
Sbjct: 152 LEDSHVKERSIEEDNEGWIVVTRRMKRKSTLTQKESSFYRNYRRRNKAQKNKKKKKTRKP 211

Query: 61  KPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETV 120
           K V E+ +DF  P   +T+A+ FP RFL D Q E  E++TCH ++  E++ +P+ S E  
Sbjct: 212 KLVHEEDKDFPQPQRLVTMADLFPTRFLCDHQDENPEVITCHTINATEEESIPSRSLEEE 271

Query: 121 ASPGDLSSFSIKDLLSLPQEAKTV 145
               +LS F++ DLLSLPQE KT+
Sbjct: 272 GMSKNLSRFNMDDLLSLPQETKTI 295

[Close]

BLAST of Spg027572 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.7e-21
Identity = 61/141 (43.26%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 4   SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPV 63
           SQEK   IE+++E WT+V RRKK+K +  +KE R +R+ ++  K+Q+ K KKK+R+ K +
Sbjct: 116 SQEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLM 175

Query: 64  VEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASP 123
            E+ +DF      +TLA++FP RFL D Q E   +V CH ++ +E++++P  S E     
Sbjct: 176 HEEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVS 235

Query: 124 GDLSSFSIKDLLSLPQEAKTV 145
            DLS F++ DLLSLPQE K +
Sbjct: 236 KDLSRFNVNDLLSLPQETKII 256

[Close]

BLAST of Spg027572 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-07
Identity = 60/163 (36.81%), Postives = 79/163 (48.47%), Query Frame = 0


Query: 136 SLPQ-EAKTVEDVKASDL--KKG---ETSTSLVKPKVVEDEKCSPVLR-------YVPLS 195
           SLPQ   K   D KA  L  K G    T T     K+ E  K S   +        +P+S
Sbjct: 542 SLPQRRTKDGFDPKAYKLMAKAGYDFTTHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMS 601

Query: 196 QHKKGESPFTECPKSIKGR-KVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARAS 255
           +   G         + KG+ KV D NHITV+EVD  +E E   QR S F RI P VAR  
Sbjct: 602 RKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEYEGDSQRTSAFDRISPHVARTP 661

Query: 256 VFQRIIVNETEEESSQPTNSSTRSSVFRRLSMFIGREESTLST 285
           VF+R+ + E E +  Q T++  R SVF+RL++    E+    T
Sbjct: 662 VFERLSMTEAERKDHQSTSNLDRRSVFQRLTITFKEEKGICQT 704

HSP 2 Score: 109.8 bits (273), Expect = 2.0e-20
Identity = 69/169 (40.83%), Postives = 98/169 (57.99%), Query Frame = 0


Query: 4   SQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPV 63
           S+E+   I+D +E WTLV RRKK+KQ++++KESR +R+ +R  KSQR+K +K  R+  P+
Sbjct: 162 SKEEEKQIDDADEGWTLVTRRKKRKQNFSQKESRSYREYRRTGKSQRRKARKNLRKLLPI 221

Query: 64  VEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASP 123
           +E+SE+      PITL ++F   F       ++EIV CH +   +DD  P++S E    P
Sbjct: 222 IEESEELPRSRQPITLKDFFSENF-------SMEIVPCHTIGTTDDDTFPSNSIEVTPKP 281

Query: 124 GDLSSFSIKDLLSLPQEAKTVEDVKASDLKKGETSTSLVKPKVVEDEKC 173
            DL S  I DLL+L QEAK   D     LK  + ST    P    D  C
Sbjct: 282 EDLLSLGINDLLTLSQEAK---DTIMEILKNDDVSTIATSPTKAYDSYC 320

[Close]

BLAST of Spg027572 vs. ExPASy TrEMBL
Match: A0A5A7SRA6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00450 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-20
Identity = 62/144 (43.06%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 1   MKGSQEKYNSIEDENEDWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRS 60
           ++ S+EK   IE+++E W +V RRKK+K +   KES  +R+ +R  K+Q+ K KKK+R+ 
Sbjct: 189 LEDSREKERPIEEDDEGWIVVTRRKKRKSTLIEKESCFYRNYRRGNKAQKNKKKKKTRKL 248

Query: 61  KPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETV 120
           K V E+ +DF  P   +TLA++FP RFL D Q E   +V CH ++++E++ +P  S E  
Sbjct: 249 KLVHEEDKDFPRPQRLVTLADFFPTRFLCDHQDENPGVVACHAINVMEEESIPLRSLEEE 308

Query: 121 ASPGDLSSFSIKDLLSLPQEAKTV 145
                LS F++ DLLSLPQE KT+
Sbjct: 309 EVSKYLSRFNVDDLLSLPQETKTI 332

The following BLAST results are available for this feature:

BLAST of Spg027572 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056780.1	3.7e-21	45.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97603.1 ty3-gyp...	[more]
KAA0046265.1	6.3e-21	43.06	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18936.1 ty3-gyp...	[more]
KAA0039557.1	1.4e-20	43.26	uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0039557.1	5.1e-07	36.81	uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0031665.1	6.9e-20	43.06	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04446.1 ty3-gyp...	[more]

BLAST of Spg027572 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg027572 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BE72	1.8e-21	45.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TY01	3.0e-21	43.06	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BSG5	6.7e-21	43.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BSG5	2.5e-07	36.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRA6	3.3e-20	43.06	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg027572 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg027572.1	Spg027572.1	mRNA