Spg027567 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg027567
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	THO complex subunit 4A
Location	scaffold11: 3532255 .. 3537734 (-)
RNA-Seq Expression	Spg027567
Synteny	Spg027567

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCTCTCGACATGAGCTTAGACGATATCATCAAGAACAACAAGAAATCCGGATCCTCAAATTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTGCAGCCAAGGTGAAGGATTTGGGTTTTAACATCCCGCTTTCGCTGAATCTTACTCTACCATCACCATCCTCTAGCACTACTACTACTACTACTACTACTGCCAGTTTCTCATTCTTTTCAAAACGGACTTGGGTATTTTCTTTTTTTAATCTTTTCAAAAACATGGGGGTTTAGGCGCCCGAGACGGCTTGGTCACACGACATGTTTGTAGATCATGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACGAAGCTTTATGTTTCGAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGTATTTCAATTTTGGATTTGAGGTTTGGATCATAAGAGAGTTCTTTTTGTTTTGTCTGTATCACTAAGACTTGGTTAAATTTTTATATGCAGGAACTGTTTTCTGAAGTTGGCGATCTAAAACGGTATTCTATAAATTATGATAAAAGTGGGAGATCAAAGGTAAGTTTCAAGTTTGTCATACAAAAGGGCTCTTTTATTTATTGACCATATTTTGACATTTGTTTGAATTTTTGTTCTTCTTAGGGAACAGCAGAAGTAGTTTTTTCACGACAAGCAGATGCTCTAGCTGCTATAAAGAGATACAACAACGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATTGTGGGAACGAACATCGTGACACCTGCTCTGCCTGCTTCTTCGAATGCCAATTTTGGAAATTTAAATGGATTTCCGAGAGGGTATACGTTTTTGTCAATTAATTCAATCTCTTATTTCTAATCTTTTGATTTTGTTTGATCATCTATTACCACAACTAATGGTATGTGGTCAGAAGTGGATATAAATTTTATTTTCTTCACGATACGTGTGTAAGCCCATGATTCAAGTAATTGTTTTTAGAGTTGTATTGGGTTTTAACAAGGAGTTTTCAACATTTTCTTGTTGTTTTGATTTAGTTCATAATTAAAACATATTTCATTATTTTGTGACATGTCCGCTGAAAGTTTTGAAAAGATCAAACATACAAATATACTATTTCTACAGCTTGTCAAGATATGCGTACTCATTGTTTTTTTAAGCTTGAGGCACACTAAAGTGCTTTAGCGTTCTGGGATTTAAGTCCATGGCGCAAAAAATTGAGCCAGTTTTTTGTGAGTCACCCTATATATAAAAAAACATGTAGATGTATATACAAAAGAATAAACATCCATGAAAAGAAATGATCTATAATAAAAAATGGATATAACATATGAAACTTTAAAGGTAAAGAAGGTTCAAAGGTGGTGTGCACAACACCTAAGTGACACCTCAAAGTGCCTTTTAAAACACTGTGTACTTAAGGAGGTGTTTTACTTGTAACACTATGGATGTAGTGAATGGGAAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAGGAAACATATGCCATTTCATTGACCTATGAAATAGGTACAAAAGGAGATAAGTATGTAGACCCTATCAAAGATATTGAATGGGAATCAATATGATGTTGCTTGAAGAAAAAGGTTTAAACTTGTATGAGGAAATTAGGGGATATAGAGGAAAAATAAAGTAAGAGAGAGCACATAATTTGTATCCATGATATTGTGAATTTTGTTTGTGATGACAATGTGTTTCCAGGTGCATGTGCATCCAACACTTTTTATTTCTCAACATGCAATTTGCTGTTTCCTAATCTTTATTATTATTCTTTTTAATAATTGTGGATGTCTGACCAACTTATAAACATCTTGGCTAATTTTATGAAAAAACCACCTGAACCGACTTCATTGGGTGTTGCGTGTTGGAAAAGTGGATAATGAATATCTTTAGGTATTTAATTTTATAACTCGTCTGTTTGACCACAACTCAAATTTGTTGTAGATTAAAGCTTATAAGATTTCTATTCAAGTTTTCCAATGATCAACGTTAAAGGTTCCAGTTCTGCCACATTTGATGCAAGAAAGAACTTAATTTGGTTATCTCTATTCCTTCTTTTGCTCGTCAAACCTTTTGGAAAATAGTCTAGATAATGATAACTATGATAGTTTATAGCTAAGTCAATAGATTTGAAGATGAAAGATTTCAAGTTTCAAGAAGAATAATAATAGTTTGAGTATGAAAATGTTTGTTGCTTGAATTTGTTTAACATGAATTTAGCTAAACAGTACTTCATCTCCACCCTGATCTTGGAAAAAAAAAAAAAAGATTCAGATAAAGTAGTTTGCTTCCCTAGTAATTGTCTGGTTGAGAGAAAACTTGGAGTGACATTGAATACTTCAATTCATTAGTTTATGCAAATTAAAAATACCTTTTCATTTACTTAAAAATAAGGGCAACGTGCTAAATTAAAGTCATTGTGTCATTGTGATGGTTTTATTTGTAGGCGCTGAAGAATCTGTTTGATTTGCTTGATACCAGTGAACGTATCTTATTGAAAGATTGAGTGGCGATTGGTTGTGAGAAGAATGGATGATGCAAATATTTTGTGTGATATTATAAATTTGGAGTGAGGCTGAAGTGAAATAAGGTGTTGTCAAGTATTTGAGTTTTTGAACTTCGTCCAACTCATTCAATCATGCAAGAGGATGGGGCAAATGATAGGAGATGAAAAATGTTTTAAGTTATAGAATTAATGATGTAGGAAATGATGGTTATTTGTGTGATTATGATGACGTTTGGATATTTGGATGTCAATTTGATTTGAGGTATGTTTTGATGAGCGCAGTTTCTTATAAAAAGAAAAAAGAGAATATTATTGGGTGTATTTTTGAAGTTCTCTTTTTCCTTTTTAAGCATCATATTATTCATCCATTGCTTTATTGCTAATGATGACCTCGGCTTATGTTTTGATCACATGACTCTGGAAATTTTCGTATTTAAATTTTCCATATTGATGTATTATATGCAAAAAGAAAATTGTTCCCGAAGGCTGCCTCATGAACATTTAGTCAATCCCAAAGAGATTTTATTTGTCATGTTTCATAGAAGCCCGTCTTTGCCTTGGTACCCCATAGCTTCTGCCTGGCTCTTGAATAGTTATGGTAATTTTGTTGTGTACATGATCATGCATTTGCTAGTATAGATTTTAGTTTCATGGATTGCCCTTTCCTTTCTATGCTTCAGTTGGTGCTATAGCTTGAAGCTGGTAATTATGTGTTATGTATTTTCAAATGCTATTGCTGACATTGAGACTTTTCATCTGATTTTGATTACTATTATTGATTCTCTTAATTAACATGCATTTCATAAATTTTCAATTGGTTTTAACAGTGGACGTGCAATGGGCCGAAACCGGGGTGGTGGACGAGGTCGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGCAGTGGCAGTGGTAGAGGTCGTGGTGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAATGCAGATCAATTAAATCATTTGGTGTCATTTTCTGAGGCTTGATATCCATAACTTCGTTAGGTGCTTGCTGATAAATGTGATAAGGACATCATTTTCTATTTTGCGAGTCATATCATGAAGCCCTGACCTTGAGAGAACCGCTAGACCTTGCTATGATGTGGAGTTTGGGCTTGAATTGTTGTTTGTTGCAGTATACTATAAAGAGGTGTTCATTAATGCTTGAATTTGTAATCTCCTGTCACTTATCTATTTTGATCTGCTCCAATCCTATTTATTTTCCATGAAAGTTGAACTGGAACTGGGAAAGTCGTTCACACTCCTTGTCCACATGGAAGGATTTGGGCGCATGACATGGGAAGTATTGGTCCTAAGAAAATCAACCACATCTTCTGGTGTCAGAGGCCAAAGTTCTGGTACACCGTTTCTAAATCATAATATTTCCTTGTTAGAATGATAGATATAGCTGACAATGTATTCTGCATATGATAATTCTTAGGTTCTGACTGCAGAATTCTACTTTATTGCTTTGCAGTGATTGGTTTTATGAATTAAAAGTAATGTGTTAAGATCTTCTACTTATTGGCATGGAGGGAGGGAGGGGTGTGGAGATGATTACCAAGTAAGTGTTCAGGAGTTAGCAATGACTTTCAAGGCCCCTGAACCGTAGGACTAGAATTGGTATGCAGTTAGAAATCAATGGAGCTTTTACTTTGTTTCAGCATTGTGTATGGCTTTTACTTTTCTATGGTTGTAGTATGACTGTTTTTACATAATTTGTTTGAGAACACTCCAGACTTCTACATTCTATAATGAGAAGCAAGGCATATATCTTTCGGTGTTCTATAATGGGTAGCTTTTCTGTTGTTCATGTTAATTTTAATATTAATTTAAAAATCTTTAGAAAGCCAAAAAAGTAGAGGAATAATGTTACTTTGTCATTGGACTCCTAGTGGAGAATCTCGGAGCTGTTGGTCAGAGTAGGAAGAACATTGATGCCAAGATATGATGCCAAGATAATATTCAGAATTGTTCCTCTTCACTTTTGTTTGAAGTTTTTTGAATTTAGTTTGTTCACATTTGATGATGAATGAAGATTGATCATTACTTAATTCAAATTTGGAGTTGATTTGATGCAATTAAAAGTTTGTTTAAATTGCTTCACCGACTCCAGCATAGGGGTAGAAAATGAATTTACCCCAACCTTTTGCAATAGATTGACAGAAGTAGCAATAGTAAGGTGGAAATAGTGAAAGCAAAGACATGTTTGAGCTTTACATCTTGCCTCATTTTGCATCTCTCTTCATTACTTCATGTGTGTGGACTGATAAGGACTGGGAAGCTTCCTCTAAATATGGAGAACAAACAAGTTTTGGAAGCCATCGATTGCGAATGTCGGTTGGGGCATATGCTATCTGAAGTCTTTATGTCAAATGAAAGAGCTTTGTATTGTAGGAAAAGGGGCAAATGTGAGAATCATGGTGCAGCTGTGGAAGCGTCCTTTCAAGTACAGGTTGTAACAACTTCAAAGTTCAAGCTCTGCTTCCACCCTCTCTCTAGGTTAGCAAATCTATATGAAGGTTAAGGAATATTAGTTGGGGGTTTGTAGGGGATTTTGGGTCCCTGGGGATGTATGCACTTTTGCAGTTTTGAAATGATTAGAAGTGCTTTTTTGTATCTCTTGCAGATGCTTTAGGTAGCTGGAGTTCTGGTATTTATGCCTAGTGATTTGCCTTGGAGGAGATTTATTTGGAGATAGTCCTTTAAAACTCTAACATGCTGAGGGAGTGATTCTGAGCACTTTGAGGACTTTTGTCATGTCTCAATGTGATTTTGATCCTCTCAAAATCACTCTCAAACATGTTCTTATTCTCTTGTAGTTTGCTC

mRNA sequence

ATGGCAGAGCCTCTCGACATGAGCTTAGACGATATCATCAAGAACAACAAGAAATCCGGATCCTCAAATTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTGCAGCCAAGGTGAAGGATTTGGGTTTTAACATCCCGCTTTCGCTGAATCTTACTCTACCATCACCATCCTCTAGCACTACTACTACTACTACTACTACTGCCAATCATGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACGAAGCTTTATGTTTCGAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTGTTTTCTGAAGTTGGCGATCTAAAACGGTATTCTATAAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAGTAGTTTTTTCACGACAAGCAGATGCTCTAGCTGCTATAAAGAGATACAACAACGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATTGTGGGAACGAACATCGTGACACCTGCTCTGCCTGCTTCTTCGAATGCCAATTTTGGAAATTTAAATGGATTTCCGAGAGGTGGACGTGCAATGGGCCGAAACCGGGGTGGTGGACGAGGTCGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGCAGTGGCAGTGGTAGAGGTCGTGGTGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAATGCAGATCAATTAA

Coding sequence (CDS)

ATGGCAGAGCCTCTCGACATGAGCTTAGACGATATCATCAAGAACAACAAGAAATCCGGATCCTCAAATTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTGCAGCCAAGGTGAAGGATTTGGGTTTTAACATCCCGCTTTCGCTGAATCTTACTCTACCATCACCATCCTCTAGCACTACTACTACTACTACTACTACTGCCAATCATGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACGAAGCTTTATGTTTCGAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTGTTTTCTGAAGTTGGCGATCTAAAACGGTATTCTATAAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAGTAGTTTTTTCACGACAAGCAGATGCTCTAGCTGCTATAAAGAGATACAACAACGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATTGTGGGAACGAACATCGTGACACCTGCTCTGCCTGCTTCTTCGAATGCCAATTTTGGAAATTTAAATGGATTTCCGAGAGGTGGACGTGCAATGGGCCGAAACCGGGGTGGTGGACGAGGTCGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGCAGTGGCAGTGGTAGAGGTCGTGGTGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCAATGCAGATCAATTAA

Protein sequence

MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLGFNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

Homology

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BLAST of Spg027567 vs. NCBI nr
Match: XP_038895300.1 (THO complex subunit 4A-like [Benincasa hispida] >XP_038895301.1 THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 404.8 bits (1039), Expect = 5.5e-109
Identity = 223/262 (85.11%), Postives = 230/262 (87.79%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYS AK  +  
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSNAKAPE-- 60

Query: 61  FNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120
                            T  +     +HGAAYPSQP RASAIETGTKLYVSNLDYGVSNE
Sbjct: 61  -----------------TAWSHDMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNE 120

Query: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180
           DIKELFSEVGDLKRYSINYDKSGRSKGTAE+VFSRQ+DALAAIKRYNNVQLDGKPMKLEI
Sbjct: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEI 180

Query: 181 VGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGRGRGE 240
           VGTNIVTPA+PASSNA FGN NGFPRGGRA+GRNRGGGRGRGPGRGGRGRGSGSGRGRGE
Sbjct: 181 VGTNIVTPAVPASSNAGFGNPNGFPRGGRALGRNRGGGRGRGPGRGGRGRGSGSGRGRGE 240

Query: 241 KLSAEDLDADLEKYHEEAMQIN 263
           KLSAEDLDADLEKYHEEAMQIN
Sbjct: 241 KLSAEDLDADLEKYHEEAMQIN 243

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BLAST of Spg027567 vs. NCBI nr
Match: XP_008457549.1 (PREDICTED: THO complex subunit 4A [Cucumis melo])

HSP 1 Score: 389.8 bits (1000), Expect = 1.8e-104
Identity = 217/264 (82.20%), Postives = 226/264 (85.61%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYS +K  +  
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPE-- 60

Query: 61  FNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120
                            T  +     +HGAAYPS P RASAIETGTKLYVSNLDYGVSNE
Sbjct: 61  -----------------TAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNE 120

Query: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180
           DIKELFSEVGDLKRYSINYDKSGRSKGTAE++FSR ADALAAIKRYNNVQLDGKPMKLEI
Sbjct: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEI 180

Query: 181 VGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGR--GSGSGRGR 240
           VGTNIVTPA+PA SNA+FGN NGFPRGGRAMGRNRGGGRGRGPGRGGRGR  GSGSGRGR
Sbjct: 181 VGTNIVTPAVPAPSNASFGNHNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGSGRGR 240

Query: 241 GEKLSAEDLDADLEKYHEEAMQIN 263
           GEKLSAEDLDADL+KYHEEAMQIN
Sbjct: 241 GEKLSAEDLDADLDKYHEEAMQIN 245

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BLAST of Spg027567 vs. NCBI nr
Match: KAG6583468.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 388.3 bits (996), Expect = 5.4e-104
Identity = 217/262 (82.82%), Postives = 225/262 (85.88%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYS A+  +  
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPE-- 60

Query: 61  FNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120
                            T  +     +HGAAYPSQPARASAIETGTKLYVSNLDYGVSNE
Sbjct: 61  -----------------TAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120

Query: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180
           DIKELFSEVGDLKRYSINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLEI
Sbjct: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEI 180

Query: 181 VGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGRGRGE 240
           VGTNIVTPA+PAS+N NFGN NGF RGG  +GRNRGGGRGRGPGRGGRGRGS S RGRGE
Sbjct: 181 VGTNIVTPAIPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS-SSRGRGE 240

Query: 241 KLSAEDLDADLEKYHEEAMQIN 263
           KLSAEDLDADLEKYHEEAMQIN
Sbjct: 241 KLSAEDLDADLEKYHEEAMQIN 242

[Close]

BLAST of Spg027567 vs. NCBI nr
Match: XP_022964653.1 (THO complex subunit 4B-like [Cucurbita moschata])

HSP 1 Score: 386.7 bits (992), Expect = 1.6e-103
Identity = 216/262 (82.44%), Postives = 225/262 (85.88%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYS A+  +  
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPE-- 60

Query: 61  FNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120
                            T  +     +HG+AYPSQPARASAIETGTKLYVSNLDYGVSNE
Sbjct: 61  -----------------TAWSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNE 120

Query: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180
           DIKELFSEVGDLKRYSINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLEI
Sbjct: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEI 180

Query: 181 VGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGRGRGE 240
           VGTNIVTPA+PAS+N NFGN NGF RGG  +GRNRGGGRGRGPGRGGRGRGS S RGRGE
Sbjct: 181 VGTNIVTPAVPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS-SSRGRGE 240

Query: 241 KLSAEDLDADLEKYHEEAMQIN 263
           KLSAEDLDADLEKYHEEAMQIN
Sbjct: 241 KLSAEDLDADLEKYHEEAMQIN 242

[Close]

BLAST of Spg027567 vs. NCBI nr
Match: KAG7019223.1 (THO complex subunit 4A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 386.3 bits (991), Expect = 2.0e-103
Identity = 216/262 (82.44%), Postives = 225/262 (85.88%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYS A+  +  
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPE-- 60

Query: 61  FNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120
                            T  +     +HGAAYPSQPARASAIETGTKLYVSNLDYGVSNE
Sbjct: 61  -----------------TAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120

Query: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180
           DIKELFSEVGDLKRYSINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLEI
Sbjct: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEI 180

Query: 181 VGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGRGRGE 240
           VGTNIVTPA+PAS+N NFGN NGF RGG  +GRNRGGGRGRGPGRGGRGRGS S RGRGE
Sbjct: 181 VGTNIVTPAVPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS-SSRGRGE 240

Query: 241 KLSAEDLDADLEKYHEEAMQIN 263
           KLSAEDLDADLEKYHEEAM+IN
Sbjct: 241 KLSAEDLDADLEKYHEEAMKIN 242

[Close]

BLAST of Spg027567 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.2e-59
Identity = 162/299 (54.18%), Postives = 186/299 (62.21%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAAKVKDLGFNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYV 120
           YS    +    +            +    T  +  A  G    +     S+IETGTKLY+
Sbjct: 61  YSRPIQQQQAHDAMWQ--------NDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYI 120

Query: 121 SNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQ 180
           SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQ
Sbjct: 121 SNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQ 180

Query: 181 LDGKPMKLEIVGTNIVTPALP-------------------ASSNANF-GNLNGFPRG--- 240
           LDGK MK+EIVGTN+  PALP                    + N NF GN NG  RG   
Sbjct: 181 LDGKLMKIEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGR 240

Query: 241 GRAMGRNRGGGRGRGPGRGGR------GRGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 261
           G  MGR RGGG G G  RGGR      GRGSG GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 GGFMGRPRGGGFGGGNFRGGRGARGRGGRGSG-GRGRDENVSAEDLDAELDKYHKEAME 290

[Close]

BLAST of Spg027567 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-56
Identity = 146/266 (54.89%), Postives = 181/266 (68.05%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSAAKVKD 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +AK   
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKA-- 60

Query: 61  LGFNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVS 120
                        P  +      +  + +H +   S     + IETGTKLY+SNLDYGV 
Sbjct: 61  -------------PESTWGHDMFSDRSEDHRSGRSS-----AGIETGTKLYISNLDYGVM 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKL 180
           NEDIKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+
Sbjct: 121 NEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKI 180

Query: 181 EIVGTNIVTPALPASSNANFGNLNGFP-RGGRAM-GRNRGGGRGRGPGRGGRGRGSGSGR 240
           EIVGTN+ T A P+   AN GN NG P RGG+   G+ RGGGRG G GRGG GRG   G+
Sbjct: 181 EIVGTNLQTAAAPSGRPAN-GNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGK 240

Query: 241 GRGEKLSAEDLDADLEKYHEEAMQIN 263
           G  EK+SAEDLDADL+KYH   M+ N
Sbjct: 241 GPAEKISAEDLDADLDKYHSGDMETN 244

[Close]

BLAST of Spg027567 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.5e-37
Identity = 125/306 (40.85%), Postives = 162/306 (52.94%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNK--KSGSSNF-----RGRGGASSGPGPSRRFRNRGLNRAAPYSA 60
           M+  L+M+LD+I+K  K  +SG         RGRGG   G GP+RR          P + 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARR---------GPLAV 60

Query: 61  -AKVKDLGFNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSN 120
            A+      N P+    +LP  S                   + A AS +E GT+L+V+N
Sbjct: 61  NARPSSFTINKPVRRVRSLPWQSGLFEDGL------------RAAGASGVEVGTRLHVTN 120

Query: 121 LDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLD 180
           LD GV+NEDI+ELFSE+G+++RY+I+YDK+GR  GTAEVV+ R++DA  A+K+YNNV LD
Sbjct: 121 LDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLD 180

Query: 181 GKPMKLEIVGTNIVTPA-LPASSNANFGNLNG-------FPRGGRAMGRNRGGGRGRGP- 240
           G+PM+LEI+G N  + A L    N N   LNG         +GG   GR RGG  GRGP 
Sbjct: 181 GRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPA 240

Query: 241 ---------------------------GRGGRGRGSGSGRGRGEK---LSAEDLDADLEK 260
                                      GRG  GRG G GRG G+K    SA DLD DLE 
Sbjct: 241 PTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLDKDLES 285

[Close]

BLAST of Spg027567 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.1e-34
Identity = 122/308 (39.61%), Postives = 168/308 (54.55%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           M++ L+M+LD+I+K +K   S+  R     S G G SR+    G  R  P         G
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAAR-----SGGKGVSRK---SGRGRGGPNGVVGGGRGG 60

Query: 61  FNI---PLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQ---------PARASAIETGTKL 120
             +   PL++N     PSSS +            + +Q             S +E GT +
Sbjct: 61  GPVRRGPLAVN---TRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTV 120

Query: 121 YVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNN 180
           Y++NLD GV+NEDI+EL++E+G+LKRY+I+YDK+GR  G+AEVV+ R++DA+ A+++YNN
Sbjct: 121 YITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNN 180

Query: 181 VQLDGKPMKLEIVGTNIVTPALPASSNANFGNLNGFPRGGRAMGRN-RGG----GRGRGP 240
           V LDG+PMKLEI+G N  T + P ++  N   LNG  +    +G+  RGG    GRG GP
Sbjct: 181 VLLDGRPMKLEILGGN--TESAPVAARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGSGP 240

Query: 241 -----------------GRGG-RGRGSGSGRGRGEK-----------LSAEDLDADLEKY 263
                            GRGG RGRG G+G GRG K            SA DLD DLE Y
Sbjct: 241 SGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADLDKDLESY 295

[Close]

BLAST of Spg027567 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.2e-33
Identity = 110/260 (42.31%), Postives = 144/260 (55.38%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKS-----GSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAK 60
           MA+ +DMSLDDIIK N+       G    RGRGG + G GP R     G     P     
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60

Query: 61  VKDLGFNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDY 120
           V   G           P+P S          +    + S     + +ETG KL VSNLD+
Sbjct: 61  VMARGG------GRNRPAPYSRPKQLPEKWQHD--LFDSGFGAGAGVETGGKLLVSNLDF 120

Query: 121 GVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKP 180
           GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA+V F R+ADAL A+K+YN V LDG+P
Sbjct: 121 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 180

Query: 181 MKLEIVGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSG 240
           M +++V + I T   PA S     N  G  R    +G   GGG  RG   G RGRG G+G
Sbjct: 181 MNIQLVTSQIDTQRRPAQS----VNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGRGRGAG 240

Query: 241 RGRGEKLSAEDLDADLEKYH 256
           R   ++LSAE+LDA L+ Y+
Sbjct: 241 RTSKQQLSAEELDAQLDAYN 248

[Close]

BLAST of Spg027567 vs. ExPASy TrEMBL
Match: A0A1S3C5R6 (THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 8.9e-105
Identity = 217/264 (82.20%), Postives = 226/264 (85.61%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYS +K  +  
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPE-- 60

Query: 61  FNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120
                            T  +     +HGAAYPS P RASAIETGTKLYVSNLDYGVSNE
Sbjct: 61  -----------------TAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNE 120

Query: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180
           DIKELFSEVGDLKRYSINYDKSGRSKGTAE++FSR ADALAAIKRYNNVQLDGKPMKLEI
Sbjct: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEI 180

Query: 181 VGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGR--GSGSGRGR 240
           VGTNIVTPA+PA SNA+FGN NGFPRGGRAMGRNRGGGRGRGPGRGGRGR  GSGSGRGR
Sbjct: 181 VGTNIVTPAVPAPSNASFGNHNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGSGRGR 240

Query: 241 GEKLSAEDLDADLEKYHEEAMQIN 263
           GEKLSAEDLDADL+KYHEEAMQIN
Sbjct: 241 GEKLSAEDLDADLDKYHEEAMQIN 245

[Close]

BLAST of Spg027567 vs. ExPASy TrEMBL
Match: A0A6J1HLI4 (THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 7.6e-104
Identity = 216/262 (82.44%), Postives = 225/262 (85.88%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYS A+  +  
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPE-- 60

Query: 61  FNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120
                            T  +     +HG+AYPSQPARASAIETGTKLYVSNLDYGVSNE
Sbjct: 61  -----------------TAWSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNE 120

Query: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180
           DIKELFSEVGDLKRYSINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLEI
Sbjct: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEI 180

Query: 181 VGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGRGRGE 240
           VGTNIVTPA+PAS+N NFGN NGF RGG  +GRNRGGGRGRGPGRGGRGRGS S RGRGE
Sbjct: 181 VGTNIVTPAVPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS-SSRGRGE 240

Query: 241 KLSAEDLDADLEKYHEEAMQIN 263
           KLSAEDLDADLEKYHEEAMQIN
Sbjct: 241 KLSAEDLDADLEKYHEEAMQIN 242

[Close]

BLAST of Spg027567 vs. ExPASy TrEMBL
Match: A0A6J1I3N4 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.7e-103
Identity = 216/262 (82.44%), Postives = 224/262 (85.50%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYS A+  +  
Sbjct: 37  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPE-- 96

Query: 61  FNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120
                            T  +     +HGAAYPSQPARASAIETGTKLYVSNLDYGVSNE
Sbjct: 97  -----------------TAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 156

Query: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180
           DIKELFSEVGDLKRYSINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLEI
Sbjct: 157 DIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKLMKLEI 216

Query: 181 VGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGRGRGE 240
           VGTNIVTPA+PAS+N NFGN NGF RGG  +GRNRGGGRGRGPGRGGRG GS S RGRGE
Sbjct: 217 VGTNIVTPAVPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGHGS-SSRGRGE 276

Query: 241 KLSAEDLDADLEKYHEEAMQIN 263
           KLSAEDLDADLEKYHEEAMQIN
Sbjct: 277 KLSAEDLDADLEKYHEEAMQIN 278

[Close]

BLAST of Spg027567 vs. ExPASy TrEMBL
Match: A0A0A0LUQ3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.9e-103
Identity = 217/269 (80.67%), Postives = 226/269 (84.01%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYS +K  +  
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPE-- 60

Query: 61  FNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120
                            T  +     +HGAAYPS P RASAIETGTKLYVSNLDYGVSNE
Sbjct: 61  -----------------TAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNE 120

Query: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180
           DIKELFSEVGD+KRYSINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGKPMKLEI
Sbjct: 121 DIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEI 180

Query: 181 VGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRG-GRGR------GSG 240
           VGTNIVTPA+PA SNA+FGN NGFPRGGRAMGRNRGGGRGRGPGRG GRGR      GSG
Sbjct: 181 VGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSG 240

Query: 241 SGRGRGEKLSAEDLDADLEKYHEEAMQIN 263
           SGRG GEKLSAEDLDADL+KYHEEAMQIN
Sbjct: 241 SGRGHGEKLSAEDLDADLDKYHEEAMQIN 250

[Close]

BLAST of Spg027567 vs. ExPASy TrEMBL
Match: A0A6J1G9Y5 (THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452298 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 4.6e-101
Identity = 213/262 (81.30%), Postives = 221/262 (84.35%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSAAKVKDLG 60
           M +PLD SLDDIIKNNKKSGSSNFRGRGGASSGP PSRRF NRGLNRAAPYS AK  +  
Sbjct: 1   MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPE-- 60

Query: 61  FNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVSNE 120
              P S +L +               +HG AYPS PARAS IETGTKLYVSNLDYGVSNE
Sbjct: 61  --TPWSHDLFV---------------DHGVAYPSHPARASTIETGTKLYVSNLDYGVSNE 120

Query: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180
           DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI
Sbjct: 121 DIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEI 180

Query: 181 VGTNIVTPALPASSNANFGNLNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGRGRGE 240
           VG NIVTP LPASSN NFGN +GF RGGRA+GRNRGGGRGRGPGRGGRGR  G+GRG GE
Sbjct: 181 VGANIVTPVLPASSNPNFGNSSGFLRGGRALGRNRGGGRGRGPGRGGRGR--GNGRGGGE 240

Query: 241 KLSAEDLDADLEKYHEEAMQIN 263
           KLSAEDLDADLEKYHEEAMQIN
Sbjct: 241 KLSAEDLDADLEKYHEEAMQIN 241

[Close]

BLAST of Spg027567 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 230.3 bits (586), Expect = 1.7e-60
Identity = 162/297 (54.55%), Postives = 186/297 (62.63%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAAKVKDLGFNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYV 120
           YS    +    +            +    T  +  A  G    +     S+IETGTKLY+
Sbjct: 61  YSRPIQQQQAHDAMWQ--------NDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYI 120

Query: 121 SNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQ 180
           SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQ
Sbjct: 121 SNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQ 180

Query: 181 LDGKPMKLEIVGTNIVTPALP-------------------ASSNANF-GNLNGFPRG-GR 240
           LDGK MK+EIVGTN+  PALP                    + N NF GN NG  RG G 
Sbjct: 181 LDGKLMKIEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGG 240

Query: 241 AMGRNRGGGRGRGPGRGGR------GRGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 261
            MGR RGGG G G  RGGR      GRGSG GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 FMGRPRGGGFGGGNFRGGRGARGRGGRGSG-GRGRDENVSAEDLDAELDKYHKEAME 288

[Close]

BLAST of Spg027567 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 229.6 bits (584), Expect = 3.0e-60
Identity = 162/299 (54.18%), Postives = 186/299 (62.21%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAAKVKDLGFNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYV 120
           YS    +    +            +    T  +  A  G    +     S+IETGTKLY+
Sbjct: 61  YSRPIQQQQAHDAMWQ--------NDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYI 120

Query: 121 SNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQ 180
           SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQ
Sbjct: 121 SNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQ 180

Query: 181 LDGKPMKLEIVGTNIVTPALP-------------------ASSNANF-GNLNGFPRG--- 240
           LDGK MK+EIVGTN+  PALP                    + N NF GN NG  RG   
Sbjct: 181 LDGKLMKIEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGR 240

Query: 241 GRAMGRNRGGGRGRGPGRGGR------GRGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 261
           G  MGR RGGG G G  RGGR      GRGSG GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 GGFMGRPRGGGFGGGNFRGGRGARGRGGRGSG-GRGRDENVSAEDLDAELDKYHKEAME 290

[Close]

BLAST of Spg027567 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 221.9 bits (564), Expect = 6.2e-58
Identity = 145/266 (54.51%), Postives = 181/266 (68.05%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSAAKVKD 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +A    
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAPEST 60

Query: 61  LGFNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVS 120
            G ++                  +  + +H +   S     + IETGTKLY+SNLDYGV 
Sbjct: 61  WGHDM-----------------FSDRSEDHRSGRSS-----AGIETGTKLYISNLDYGVM 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKL 180
           NEDIKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+
Sbjct: 121 NEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKI 180

Query: 181 EIVGTNIVTPALPASSNANFGNLNGFP-RGGRAM-GRNRGGGRGRGPGRGGRGRGSGSGR 240
           EIVGTN+ T A P+   AN GN NG P RGG+   G+ RGGGRG G GRGG GRG   G+
Sbjct: 181 EIVGTNLQTAAAPSGRPAN-GNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGK 240

Query: 241 GRGEKLSAEDLDADLEKYHEEAMQIN 263
           G  EK+SAEDLDADL+KYH   M+ N
Sbjct: 241 GPAEKISAEDLDADLDKYHSGDMETN 242

[Close]

BLAST of Spg027567 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 221.5 bits (563), Expect = 8.1e-58
Identity = 146/266 (54.89%), Postives = 181/266 (68.05%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSAAKVKD 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +AK   
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKA-- 60

Query: 61  LGFNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVS 120
                        P  +      +  + +H +   S     + IETGTKLY+SNLDYGV 
Sbjct: 61  -------------PESTWGHDMFSDRSEDHRSGRSS-----AGIETGTKLYISNLDYGVM 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKL 180
           NEDIKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+
Sbjct: 121 NEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKI 180

Query: 181 EIVGTNIVTPALPASSNANFGNLNGFP-RGGRAM-GRNRGGGRGRGPGRGGRGRGSGSGR 240
           EIVGTN+ T A P+   AN GN NG P RGG+   G+ RGGGRG G GRGG GRG   G+
Sbjct: 181 EIVGTNLQTAAAPSGRPAN-GNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGK 240

Query: 241 GRGEKLSAEDLDADLEKYHEEAMQIN 263
           G  EK+SAEDLDADL+KYH   M+ N
Sbjct: 241 GPAEKISAEDLDADLDKYHSGDMETN 244

[Close]

BLAST of Spg027567 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-57
Identity = 146/267 (54.68%), Postives = 181/267 (67.79%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSAAKVKD 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +AK   
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKA-- 60

Query: 61  LGFNIPLSLNLTLPSPSSSTTTTTTTTANHGAAYPSQPARASAIETGTKLYVSNLDYGVS 120
                        P  +      +  + +H +   S     + IETGTKLY+SNLDYGV 
Sbjct: 61  -------------PESTWGHDMFSDRSEDHRSGRSS-----AGIETGTKLYISNLDYGVM 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKL 180
           NEDIKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+
Sbjct: 121 NEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKI 180

Query: 181 EIVGTNIVTPALPASSNANFGNLNGFP--RGGRAM-GRNRGGGRGRGPGRGGRGRGSGSG 240
           EIVGTN+ T A P+   AN GN NG P  RGG+   G+ RGGGRG G GRGG GRG   G
Sbjct: 181 EIVGTNLQTAAAPSGRPAN-GNSNGAPWSRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPG 240

Query: 241 RGRGEKLSAEDLDADLEKYHEEAMQIN 263
           +G  EK+SAEDLDADL+KYH   M+ N
Sbjct: 241 KGPAEKISAEDLDADLDKYHSGDMETN 245

The following BLAST results are available for this feature:

BLAST of Spg027567 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895300.1	5.5e-109	85.11	THO complex subunit 4A-like [Benincasa hispida] >XP_038895301.1 THO complex subu...	[more]
XP_008457549.1	1.8e-104	82.20	PREDICTED: THO complex subunit 4A [Cucumis melo]	[more]
KAG6583468.1	5.4e-104	82.82	THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022964653.1	1.6e-103	82.44	THO complex subunit 4B-like [Cucurbita moschata]	[more]
KAG7019223.1	2.0e-103	82.44	THO complex subunit 4A [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Spg027567 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L719	4.2e-59	54.18	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q8L773	1.1e-56	54.89	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q6NQ72	4.5e-37	40.85	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q94EH8	2.1e-34	39.61	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
B5FXN8	5.2e-33	42.31	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]

BLAST of Spg027567 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5R6	8.9e-105	82.20	THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1	[more]
A0A6J1HLI4	7.6e-104	82.44	THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 S...	[more]
A0A6J1I3N4	1.7e-103	82.44	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=...	[more]
A0A0A0LUQ3	4.9e-103	80.67	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV...	[more]
A0A6J1G9Y5	4.6e-101	81.30	THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Spg027567 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02530.2	1.7e-60	54.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	3.0e-60	54.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	6.2e-58	54.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.1	8.1e-58	54.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	1.1e-57	54.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 107..179 e-value: 7.3E-20 score: 82.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 108..176 e-value: 3.7E-16 score: 58.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 106..183 score: 16.414856
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 194..262 e-value: 6.5E-11 score: 52.3
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 207..255 e-value: 6.0E-7 score: 30.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 77..244 e-value: 4.2E-29 score: 103.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..262
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..261
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..261
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 106..180 e-value: 2.90186E-44 score: 142.393
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 93..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg027567.1	Spg027567.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding