Spg027539 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027539
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSIL1
Locationscaffold11: 3460774 .. 3465148 (+)
RNA-Seq ExpressionSpg027539
SyntenySpg027539
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTTTCAATCAAGACAATAACCTTTCACGTGCTGCACGTATCGTTTAACTAGTTTATAGAAAAAACAGAGCGCGTGTAGGCATATGTATGGCGTCCACTGCGGCACTAACCCAAATCGCCACTCTTTGTCGGTCGTCACGTCGAAGCCCCACGCTGTTGCCTCCATCGGGCGCCAAATCAACCACACCTCTGTTCTCTTCCTTTTAAATTTTATTCTCTCTGCAACTGCACGCCCAAGCAACATCAGGATCTTCTCATGCGTTCTCTTTCAATTTCTTGTCCTCTCTTCTTCGTGGACCCTCGATCTTCTTCCACAAGATGACTGCATCGTTCATGTTTCCTTCACGGTGGTCGGATTGATCCAGATTAGGGTTACGGTTCTGCCATCTCGCTTCCCCGTTCTTGCATGATTTTCTACTCTCTGTGATCACAATGTCTCGGGCGTTGACGCCTCGGAGCTCTGCTTATCTTAGCGCCTTGTCCCTGCAGATTGAGAAGAAGCTTCAGCGGGTTCGTTTCTCTTCACTTTTTTCGGTTTGAATGTATGATTTTCTTTGTGATGTTCTGTGGCTGCTGAATGAGGAAACAGAATTGGAAGTTAATTTGGATATTCCGTGTTGTACTGTTCGGATAAGAGCTTTATCTTCTTTACTGTTCTATGTGAATGGCTGAATTTGTTCCAATTTTGACTTTTCTTTTTCCCCTTCTCGGGAATCTTACTGGGCACGATTGATTCTCCGTTAAAGCCATCGCCTGTTCTGCGACTGTAATCCGACATTTTCGAGCTTGTGAATTCAAGTGGAGTTTCTTCCTCTTGATGTGAGAGAAGTTTCACCAATAAAAATCAGATGTTAATGTTAGGCCTCCCGTTGTTCTAACTTGCTAAAGAGCGGTAAAAAGGGGAATTGTTAGGACGTGAGTTTGTTAGAGAAGAGAGTAGTCTATTTCAGGGAGAGGGTATGCATTTCGGCTGGGTATTGGGATTGTGTGATTGGGGAAGGGCGAGAGGAGGGTGCAGGGGGCTGAGGTAATCTTCTCTTTGCTCGTTTTTGGTATTGTTTTCCTTCTAATGAATTGGAACCTATCGACTACGTATTAGAAACAGGGACCATGGTTAATAAGAGAGTGAAGAGAAAAGAATGGGTGAATTGGAGAAGGAGATGGAAGATATGAAGTTGGAAATTTAAAGGCTACTTGATTTAGTGCGAGCATTTGAACTCGTCACTTATAATGTTTTAAAGTTGCTAGCCGTCTTGGAATACACTGGAAACCAACTTGTGAGCTGTCAGAAATTAAAAGGTTTCTTGATTTAGGCTACTTTGATGAAGAAGAAGGTAATGGAAGCTCTTGGGTGTCTTTGTGCGTGTCCAGATTTTTTCCCATTAATAGAGATGTCTAGCAGCCTATTAATGCATCCTTGTAGGGAATCAAAGGGCATTCAAGAAATAGGTGAGTTGTCTGGCAAACTGCAACCCGAACGAGCCAAAGAACTCATCCCACACTGTCCTAGCAAAAGCGCAGTTCCATAACATATGATCGAGGTCTTCCTCCGCCATCCGACAAAGAATGCAACAAAAAGGCCCAAATAGACTAGGAATCTTTCTGGACAGCCGATCAAGAGTATTAACTCTTCCATGGATCACCTGCCAAATAAAAAACTGCACCTTCTTTGGAACTTTCACCTTCCACAATAAAGAGAAAATGGACGGCTGAGAGGAAACAGGGTCCAAAAGGCATCGGAAGAAGGATCGACAAGAAAACCCGAGGGAAGGGTCGGGACTCCAGACTCGAATGTCTTTCCTAGTGGTACTAAAAGCGATTTCCCCAATCAAAGAAAGGAGAGTCACGAGGTCCGTTGTTTCACGAACAGACAACGGACGCGCAAAGCCAAAGCAATAAGAAAGAGAGCTCCCGGAAGGAATCAGAACCTCGGCCACGGAATGATTTTTCATAGAAGAAAGATGATAGAGCCGAGGAAAGGTAACGCAAAGGGGTCGATCGAGGAGTTCCTTCCCCATCCTCCCTTTAGGGAGCCAGGAAAGTTTTTGTGGCAAGCTGGGATTTGTGCTATTATTTGGGGGTTGTGGGGTGAGAGAAACAATAGAACTTTTAGAGGGTTAGAGAGGGATCCTATTGAGGTTTGGTCCCTTGTTAAATATAATGTTTCTCTTTGGGCGTCGGTGACGCGTTTATTTTGTAATTATTCCTTAGGTCTCATCATTTTGGATTGGAGTCCCTTCATTTAAAGGGATTCCTCTTTCTCGGGCTTGTTTTTTGTATGCCCTTGTATTCTTTCATTTTTTCTCAATGAAAGCATGGTCTTTTATCAAAAAAAAAAAAAAAGAAATAGGTGAGTTGTGAAAGGTCAGACATATTCTTTTCTTGAACAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATTATTATTATTTTTAGATTCTTGTAGAGTGTTTATGTTCCATTCCCAAAACTGGCCTTAAAGAATTTTCCATTCAATGTACATTGCAGAAGAGCCGCCCAAAGAAAATGCTCCCATTTCAATCTAAAGTAAAAAGCAGAAAATTTAACCACCAAGTTAGAGAAGTGAATCAAATTTTCTGACTACGACTGTTAAAATCCATGGAAACTCTCACGTGTTTTACACCATTTTCACTGAGAAAGCTGGAGAGAGATTTTCACTGGGAGGTTGAGTCTTGCTTATGCTCCTTCTACCATTTTATAAATAGGGTGATGTCAGATCCCATAGCACATTGGGGCATGAAAATAGACCTGCTGATGCACATTCTAGAGTTGTGGTAGACCAGATTCTTAGCTTCTGTATTTTGTACATTATAAAAGGATCACCTAGTACTTTGTTCTTTGCTTGTTCCTCTCAAATCAGCTTACTTCAAACCTTCCATGGAAGCATTGTTGGGGGTTATTTATATGAGGATTGCATGAGGATAATATTGGCAGCAAGATGTAAAGAGGCTAGTGTTGGAGTGTTGATTTGGCAACAAAATAAGAGCTTTGTCCCCAGCTGGCTTGCTCTAACTACTTTCATTCCCTGCTAAATTTGGGATGACATAACCATAGTTTTTGGAAAACACTTCCTAGATCAAGCACTATTCTGGTCATGGTGGACAGATTAAGGAAATTCACTCATTCCATAATTCATACCATTACAAACTTTATAGGAGGTGGTGTCTACCTCTTTTGTAAAGGAAGTCAATGAGTCATACTCCATGGTTTTCCTAGATCCATTACATCGGGGTGAAACAAAGTTTTCCTGGGTCATTTTTGGGTGTAGCTATTTTGGTTACAAGGCACATCCTTCCAGAGAAGTATGACGTATCACCCTAAATGAATGGCCAATCTGAAGTCATCTCCATTATTTCTGCTATGACAAACTGAATGGTGGCATTTTTGGTTGGCTTGGTGTAACATCACAATCCATTTCTCGATTGAAAGTATAAGGGTGAGGACCACCTTCCTTGGTAGTACAGTTTAGACAGTTGGCAACCAGTAATTCAGTTTAAGATCAACTTCTGTAAGATTGGCACCATGCTCTTCATGAACGTAAGGCTTATTTATTACAAGCATAGACTGAGATGAAGTATATTGTATACAGTAAACCTAGAGAGGTTGAATCCCTAGTGGATGATTTGGTCTATTTGAAACTTCTACCATTAATATTGTTCTCCTTAGCTCAAAAGGTAAAAGAAAAGCTTTCTCCAAGAGATTTTTGTCCCAACCAGCTGCTCGTATGAATTAATAAAACGCTTATTGGTTGGCTCTACCAGCGAAGTCCACCATACATAAGGTTTACCTGAGAGGATTGGACATTTTGGTGACTTTCAAAGAGAGTATTCTTGCCATGCTTTTGGCTGGACATTGAAATTATGTAATATGCGAAGGGTGAGTAGAGAGTGTAGGGTAAGGCTGAGGTAAGAATTCTCCTTCCTTATACTCTTTGGCGTTATTTTTTCTGTAGTGAATTGGAAACTCATTGTCTTTAATATTTATTTTAATTTTAATTTAATTTAATTTTATTTTTAAATGTAGGCATTGGCTTCTTCATCACAGAGGCGAGATGTACTGCAAGAATTATTTGCTGACATAGCATTAGAAGTCGATGAACGAGCCAAAGGTGAGTTGTGGTAGTGCAAAATCTTATATATTTTACAAACAGGAACAACATGTGGAAGAGAGTTTTGATCCTATAAGTTTCTCATAATTTCTAAGGGCACCTGCCTGTTTGTTTTCAATAAGTTATGTACCTGCCATTGGCTAGTTTTTTTATTAAGTTATCTCATGCTTATTGAGATCGAATGTATATTGACTAACTTACTTGACCCATAGTAAAATCATCTATGCTAACTATGCC

mRNA sequence

ATGATTTTTCATAGAAGAAAGATGATAGAGCCGAGGAAAGGTAACGCAAAGGGGTCGATCGAGGAGTTCCTTCCCCATCCTCCCTTTAGGGAGCCAGGAAAGTTTTTGTGGCAAGCTGGGATTTGTGCTATTATTTGGGGGTTGTGGGGTGAGAGAAACAATAGAACTTTTAGAGGGTTAGAGAGGGATCCTATTGAGGGTGATGTCAGATCCCATAGCACATTGGGGCATGAAAATAGACCTGCTGATGCACATTCTAGAGTTGTGGCATTGGCTTCTTCATCACAGAGGCGAGATGTACTGCAAGAATTATTTGCTGACATAGCATTAGAAGTCGATGAACGAGCCAAAGGTGAGTTGTGGTAG

Coding sequence (CDS)

ATGATTTTTCATAGAAGAAAGATGATAGAGCCGAGGAAAGGTAACGCAAAGGGGTCGATCGAGGAGTTCCTTCCCCATCCTCCCTTTAGGGAGCCAGGAAAGTTTTTGTGGCAAGCTGGGATTTGTGCTATTATTTGGGGGTTGTGGGGTGAGAGAAACAATAGAACTTTTAGAGGGTTAGAGAGGGATCCTATTGAGGGTGATGTCAGATCCCATAGCACATTGGGGCATGAAAATAGACCTGCTGATGCACATTCTAGAGTTGTGGCATTGGCTTCTTCATCACAGAGGCGAGATGTACTGCAAGAATTATTTGCTGACATAGCATTAGAAGTCGATGAACGAGCCAAAGGTGAGTTGTGGTAG

Protein sequence

MIFHRRKMIEPRKGNAKGSIEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRGLERDPIEGDVRSHSTLGHENRPADAHSRVVALASSSQRRDVLQELFADIALEVDERAKGELW
Homology
[Close]
BLAST of Spg027539 vs. NCBI nr
Match: TYK23653.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.7e-10
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 20 IEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRGLERDPIE 67
          I EFL   P RE G FLW  G+CA+IW LWGERNNR FRG+ER+P E
Sbjct: 34 IGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCE 80

[Close]
BLAST of Spg027539 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-10
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 15  NAKGSIEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRGLERD--PIEGDVRSH 74
           + +   E F+ HPPF+E G+FLW A +CAI+W +WGERN+R FRG +RD   I   VR H
Sbjct: 309 DVRAMTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFH 368

Query: 75  STL 76
            +L
Sbjct: 369 VSL 371

[Close]
BLAST of Spg027539 vs. NCBI nr
Match: TYK26833.1 (nardilysin-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-09
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 19  SIEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRGLERDPIE 67
           +IEEFL HP  RE  +F+W AG+CAI+W +WGERN+R FR  E DP E
Sbjct: 156 TIEEFLLHPSSRENCRFMWLAGVCAIMWNIWGERNDRVFREKEWDPCE 203

[Close]
BLAST of Spg027539 vs. NCBI nr
Match: KAA0066908.1 (mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-08
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 15  NAKGSIEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRG 60
           + +  IEEFL H PFR+ G FLW AG+CA++W +WG+RN+R  RG
Sbjct: 345 SVRAMIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRNDRVLRG 389

[Close]
BLAST of Spg027539 vs. NCBI nr
Match: ADN33690.1 (SIL1 [Cucumis melo subsp. melo])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 17  KGSIEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRG 60
           +  IEEFL HPP R+ G FLW A +CA++W +WGERN+R F G
Sbjct: 92  RAMIEEFLLHPPSRDKGVFLWLAEVCAVVWYIWGERNDRVFWG 134

[Close]
BLAST of Spg027539 vs. ExPASy TrEMBL
Match: A0A5D3DJ76 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 20 IEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRGLERDPIE 67
          I EFL   P RE G FLW  G+CA+IW LWGERNNR FRG+ER+P E
Sbjct: 34 IGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCE 80

[Close]
BLAST of Spg027539 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-10
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 15  NAKGSIEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRGLERD--PIEGDVRSH 74
           + +   E F+ HPPF+E G+FLW A +CAI+W +WGERN+R FRG +RD   I   VR H
Sbjct: 309 DVRAMTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFH 368

Query: 75  STL 76
            +L
Sbjct: 369 VSL 371

[Close]
BLAST of Spg027539 vs. ExPASy TrEMBL
Match: A0A5D3DT90 (Nardilysin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00220 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 19  SIEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRGLERDPIE 67
           +IEEFL HP  RE  +F+W AG+CAI+W +WGERN+R FR  E DP E
Sbjct: 156 TIEEFLLHPSSRENCRFMWLAGVCAIMWNIWGERNDRVFREKEWDPCE 203

[Close]
BLAST of Spg027539 vs. ExPASy TrEMBL
Match: A0A5A7VGR5 (Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00280 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.2e-09
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 15  NAKGSIEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRG 60
           + +  IEEFL H PFR+ G FLW AG+CA++W +WG+RN+R  RG
Sbjct: 345 SVRAMIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRNDRVLRG 389

[Close]
BLAST of Spg027539 vs. ExPASy TrEMBL
Match: E5GB48 (SIL1 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-07
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 17  KGSIEEFLPHPPFREPGKFLWQAGICAIIWGLWGERNNRTFRG 60
           +  IEEFL HPP R+ G FLW A +CA++W +WGERN+R F G
Sbjct: 92  RAMIEEFLLHPPSRDKGVFLWLAEVCAVVWYIWGERNDRVFWG 134

The following BLAST results are available for this feature:
BLAST of Spg027539 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23653.12.7e-1065.96SIL1 [Cucumis melo var. makuwa][more]
TYK19563.14.6e-1050.79uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa][more]
TYK26833.13.9e-0960.42nardilysin-like [Cucumis melo var. makuwa][more]
KAA0066908.11.5e-0855.56mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa][more]
ADN33690.12.2e-0758.14SIL1 [Cucumis melo subsp. melo][more]
BLAST of Spg027539 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027539 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DJ761.3e-1065.96SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1[more]
A0A5D3D7T22.2e-1050.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DT901.9e-0960.42Nardilysin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G0022... [more]
A0A5A7VGR57.2e-0955.56Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695... [more]
E5GB481.0e-0758.14SIL1 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
BLAST of Spg027539 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027539.1Spg027539.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0043167 ion binding
molecular_function GO:0008237 metallopeptidase activity