Spg027525 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027525
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold11: 4343494 .. 4343730 (+)
RNA-Seq ExpressionSpg027525
SyntenySpg027525
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCACTTTGTTCGATGCCTTCGTCGCCGAATTGCTCCTCGGCAAGTTCGTTAGGGCTCCTTCCTCTGTCCCTTCCTTCACTCCCGACAACGTCGGCTCTGTCTCTTCCGCCTCCATCGTGAAGTCGCCGTCGAGTAAGAAGGAAGAACCTAAGCCCAACAATTCCTCGATCAGGCCCAGATTTGCTTTCGAGTTCGATGGCCTCAATTGCCTCGAGACTCTCGTCCCCAATTGA

mRNA sequence

ATGTTCACTTTGTTCGATGCCTTCGTCGCCGAATTGCTCCTCGGCAAGTTCGTTAGGGCTCCTTCCTCTGTCCCTTCCTTCACTCCCGACAACGTCGGCTCTGTCTCTTCCGCCTCCATCGTGAAGTCGCCGTCGAGTAAGAAGGAAGAACCTAAGCCCAACAATTCCTCGATCAGGCCCAGATTTGCTTTCGAGTTCGATGGCCTCAATTGCCTCGAGACTCTCGTCCCCAATTGA

Coding sequence (CDS)

ATGTTCACTTTGTTCGATGCCTTCGTCGCCGAATTGCTCCTCGGCAAGTTCGTTAGGGCTCCTTCCTCTGTCCCTTCCTTCACTCCCGACAACGTCGGCTCTGTCTCTTCCGCCTCCATCGTGAAGTCGCCGTCGAGTAAGAAGGAAGAACCTAAGCCCAACAATTCCTCGATCAGGCCCAGATTTGCTTTCGAGTTCGATGGCCTCAATTGCCTCGAGACTCTCGTCCCCAATTGA

Protein sequence

MFTLFDAFVAELLLGKFVRAPSSVPSFTPDNVGSVSSASIVKSPSSKKEEPKPNNSSIRPRFAFEFDGLNCLETLVPN
Homology
BLAST of Spg027525 vs. NCBI nr
Match: KAA0042638.1 (uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK06039.1 uncharacterized protein E5676_scaffold376G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-18
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 0

Query: 1  MFTLFDAFVAELLLG-KFVRAPSSVPSFTPDNVGSVSSASIVKS--PSSKKEEPKPNNSS 60
          MF+LFDAF AE LLG  FVRA SS+PSFTP+N  + +++S V    PS KKEEPKP NSS
Sbjct: 4  MFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPKNSS 63

Query: 61 IRPRFAFEFDGLNCLETLVPN 79
          ++PRFA E DGLNC ETLVPN
Sbjct: 64 VKPRFALELDGLNCFETLVPN 84

BLAST of Spg027525 vs. NCBI nr
Match: XP_011654674.1 (uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-17
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1  MFTLFDAFVAELLLGKFVRAPSSVPSFTPDNVGSVSSASIVKSPSSKKEEPKPNNSSIRP 60
          MF+LFDAF AE LLG FVRA SSVPSFTP+N  + S A     PS K+EEPK  NS ++P
Sbjct: 4  MFSLFDAFAAEFLLGNFVRASSSVPSFTPNN-NNASPAVPKPLPSKKEEEPKSKNSLMKP 63

Query: 61 RFAFEFDGLNCLETLVPN 79
          RFA E DGLNC ETLVPN
Sbjct: 64 RFALELDGLNCFETLVPN 80

BLAST of Spg027525 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.9 bits (224), Expect = 5.3e-15
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MFTLFDAFVAELLLGKFVRAPSSVPSFTPDNVGSVSSASI-VKSPSSKKEE----PKPNN 60
          MF+ FDAF AE+L+GKFV A +SVPSFTP+  G  S++S  VKS   KK+E     K  N
Sbjct: 4  MFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAKSKN 63

Query: 61 SSIRPRFAFEFDGLNCLETLVPN 79
          SS++PRFA E DGLNC ETLVPN
Sbjct: 64 SSMKPRFALELDGLNCFETLVPN 86

BLAST of Spg027525 vs. NCBI nr
Match: KAG6579594.1 (hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 6.9e-15
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 0

Query: 1   MFTLFDAFVAELLLGKFVRAPSSVPSFTPDNVGSVSSASI-VKSPSSKKEE----PKPNN 60
           MF+ FDAF AE+LLGKFV A +SVPSFTP+  G  S++S  VKS   KKEE     K  N
Sbjct: 84  MFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAKSKN 143

Query: 61  SSIRPRFAFEFDGLNCLETLVPN 79
           S ++PRFA E DGLNC ETLVPN
Sbjct: 144 SLMKPRFALELDGLNCFETLVPN 166

BLAST of Spg027525 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothetical protein SDJN02_22166, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.5 bits (223), Expect = 6.9e-15
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 0

Query: 1  MFTLFDAFVAELLLGKFVRAPSSVPSFTPDNVGSVSSASI-VKSPSSKKEE----PKPNN 60
          MF+ FDAF AE+LLGKFV A +SVPSFTP+  G  S++S  VKS   KKEE     K  N
Sbjct: 4  MFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAKSKN 63

Query: 61 SSIRPRFAFEFDGLNCLETLVPN 79
          S ++PRFA E DGLNC ETLVPN
Sbjct: 64 SLMKPRFALELDGLNCFETLVPN 86

BLAST of Spg027525 vs. ExPASy TrEMBL
Match: A0A5D3C6N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001400 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-19
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 0

Query: 1  MFTLFDAFVAELLLG-KFVRAPSSVPSFTPDNVGSVSSASIVKS--PSSKKEEPKPNNSS 60
          MF+LFDAF AE LLG  FVRA SS+PSFTP+N  + +++S V    PS KKEEPKP NSS
Sbjct: 4  MFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPKNSS 63

Query: 61 IRPRFAFEFDGLNCLETLVPN 79
          ++PRFA E DGLNC ETLVPN
Sbjct: 64 VKPRFALELDGLNCFETLVPN 84

BLAST of Spg027525 vs. ExPASy TrEMBL
Match: A0A0A0KJT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1  MFTLFDAFVAELLLGKFVRAPSSVPSFTPDNVGSVSSASIVKSPSSKKEEPKPNNSSIRP 60
          MF+LFDAF AE LLG FVRA SSVPSFTP+N  + S A     PS K+EEPK  NS ++P
Sbjct: 4  MFSLFDAFAAEFLLGNFVRASSSVPSFTPNN-NNASPAVPKPLPSKKEEEPKSKNSLMKP 63

Query: 61 RFAFEFDGLNCLETLVPN 79
          RFA E DGLNC ETLVPN
Sbjct: 64 RFALELDGLNCFETLVPN 80

BLAST of Spg027525 vs. ExPASy TrEMBL
Match: A0A6J1EM23 (uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC111435766 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 0

Query: 1  MFTLFDAFVAELLLGKFVRAPSSVPSFTPDNVGSVSSASI-VKSPSSKKEE----PKPNN 60
          MF+ FDAF AE+LLGKFV A +SVPSFTP+  G  S++S  VKS   KKEE     K  N
Sbjct: 4  MFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAKSKN 63

Query: 61 SSIRPRFAFEFDGLNCLETLVPN 79
          S ++PRFA E DGLNC ETLVPN
Sbjct: 64 SLMKPRFALELDGLNCFETLVPN 86

BLAST of Spg027525 vs. ExPASy TrEMBL
Match: A0A6J1E0L6 (uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026066 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 44/83 (53.01%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 1  MFTLFDAFVAELLLGKFVRAPSSVPSFTPDNVGSVSSASIVKSPSSKK-----EEPKPNN 60
          MF+LFDAF AELL+ K  RA S   SF P+N     S   VKSP S       E+PK N 
Sbjct: 4  MFSLFDAFAAELLMAKTFRASS---SFAPNN----GSGGSVKSPPSNAAPDNLEQPKSNK 63

Query: 61 SSI--RPRFAFEFDGLNCLETLV 77
          +S+   PR A EFDGLNC ETLV
Sbjct: 64 NSLLRPPRLAPEFDGLNCFETLV 79

BLAST of Spg027525 vs. ExPASy TrEMBL
Match: A0A7J6FVL8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020198 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 1  MFTLFDAFVAELLLGKFVRAPSSVPSFTPDNVGSVSSASIVKSPSSKKEE---PKPNNSS 60
          +F+ FD F AE+LLGK V +  + PS + +N  S+      K+  S+ +E    K  +SS
Sbjct: 4  LFSSFDIFSAEMLLGKNVMSFYASPSSSANNCKSIKQQEDHKNRGSQPQEAQQKKIGSSS 63

Query: 61 IRPRFAFEFDGLNCLETLV 77
            PR A EFDGLNC ET V
Sbjct: 64 PAPRLALEFDGLNCFETFV 82

BLAST of Spg027525 vs. TAIR 10
Match: AT1G32928.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 6.9e-05
Identity = 34/80 (42.50%), Postives = 43/80 (53.75%), Query Frame = 0

Query: 1  MFTLFDAFVAELLLGKFVRAPSSVPSFTPDNVGSVSSASIVK-SPSSKKEEPKPNNSSI- 60
          MF+ FDA  AE ++GK V A S V     ++  S SS      S S KK+E    N  + 
Sbjct: 4  MFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEKASKNMDLP 63

Query: 61 --RPRFAFEFDGLNCLETLV 77
             PRFA E DGL+C ET+V
Sbjct: 64 TKTPRFALELDGLHCFETIV 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042638.11.0e-1866.67uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK0... [more]
XP_011654674.12.5e-1766.67uncharacterized protein LOC105435432 [Cucumis sativus][more]
XP_023522684.15.3e-1560.24uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo][more]
KAG6579594.16.9e-1561.45hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022929066.16.9e-1561.45uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothet... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C6N35.0e-1966.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KJT81.2e-1766.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1[more]
A0A6J1EM233.3e-1561.45uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC1114357... [more]
A0A6J1E0L62.6e-0753.01uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026... [more]
A0A7J6FVL82.0e-0443.04Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020198 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G32928.16.9e-0542.50unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027525.1Spg027525.1mRNA