Spg027511 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027511
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold11: 3814511 .. 3817232 (+)
RNA-Seq ExpressionSpg027511
SyntenySpg027511
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCTTCTTCCACAGGATTAAAGGGGAAGATCTCAAGCCTTCCCCCAAAACGGGGTCGTATTAAGGCTCAGATTTTTGAGAGCCTTGTCAACTCGGCAGCCTTGGCCGCCTTCATGGCCGAAGAAATCCTCTGCAGAGTCATCCGAGACCTCGTCGGCGCCGGCAGAACCGACGCCGTCACGCCGCCTTCTCCGCCGGCGCCGCCACCTCCTCTTATTTTTGATGGAGGCTCCGTCGTCACGTGATACCCCCACCCTCTCTTACTACTGCGTTTTAATTGGTCGGAGATGGGATTTCTGCTGTGTTCTTGCTCATTTTTTGAGGAGCTATAGATTTGTAATTTCTTTTTTTCCCTTTTTTTTCATAATTTTTGGCTCTTGTGTGGTGTGGTTTTTTTTTTTTTTTTTTTTTGAGTTCGACGATACGTCAGCTTGTTTTGAGATTCAAATTTCTGACTATTTGGTCGAGGATATAATGTCTATGATCTGTCGAACTACGCTCAGATTGTTGTGTGAGGAGTGTGATTTTAGTCTCAGTTTTATATATTTTTTTTTTTTTAACATTGCAAATAAAGAGTGATAGAGTGAGAAATTTTGTGTGGAGTGTACTAACCTCAAAGCTTTGTGGGTTTTTTTTTTTTTAAGATAGATGCCTCAAAGCTTTGTTGGTTTCTATGTTTATGTGAAAGTTGTTGAATAAATTTAATTTGGGTTTGATTCCTATTTTTCCAATCTTATCTAATTAGATTTCATTGTCATGGTTTCAAATATTCTATTCTCCTTAATTACTTCTTTGTACTAATCTCTTTTGATTGTTAATTGATTATTATATTTAATTGGATTATTCTTATGTCATTAGTTTCTAGAATGGATACTATATATGTCATTATGATAAATCTAAGTGTGGTCATATATAGGTAGGTTTTTTTTTTTTTTTTTTTTTTTGTGTTAAATATTATCTGAACCTTAACAACAAATTAACAACAAATGATCAAGATGACTTTGGAAAAAAGAATTATTTTTACGGATTGTCAAGGCAATTTTAACATTAAACTTTTAATTTAATCTCATTCGACCTTAAAATTTAAGTAAGAGGTAAATTAATAACCTTTAGTTAATTGAATTTATATTTTTCTAAGACATATTTGAGATTAGATGACTATTTTTATAGGCACAAGCCTCTTCTCAAGTTGTATGGGATGTTTTTGGTTAGGTTTGTACAAGAAAGTTATATTTAGTTTGAGTTAAAAAAAAAAAAATCAAAAGTCATTTTGTAACTTTTGCTTTTATGGTAAGATTGGTTCAATCAATCGTAAACCTGCTTTACGATAAATTTAATTATATAATATATGTTTTAATAAGGTTCACATATTTTGGATTTTTTTTATAAAAAATATATCACTGTTTATAAAAAAAATGTTTTAATAATAAAATTGTTTTGAAACTATTTTATGACAAATATTGTAGTTTTTTTTTTTTTTTTTTAACTATTTTGAAAAATATTGTAGTATTAATGAGTTTGCATATAAAATGGTTAGGTGAGTGGTGATTTCTCAATAACCATATTCTCAAAAGTAGTTTTAAAATTTTTCATAAATTTATATTAAAATAAAAACATTTTAAATTTTACCGTGTGCTTATTTTTATGGTTGGATTTGGACATTTCTTTAGCTTGATTTTGAGTATTTTATTGATTGAGTTTAAGTGACTTATTTAGTTGGTTTAAGAGTAGTTCTATAATTAGTTTAAAAAAAAAAAAAAAAAAAAAAGAGTAGTTCTATAATTTCTTCAAAAAAAAAAAATAGTTCTATAATTTAGTTTTGAAAAGAATATAAACTTCAACATTAATTTATTAACAAAATCATGTACGGAGTAAAATAAACTTTTTTTTTTTCTAAATTATTTTTTATGTAGGTTAAAATATAAAAAATAATAACTAAAATAGAATTAGTCTTACAAAATTAAAATATGATTTAAATGTCAAGAGTGATTTTGAGTCTATCATACATAATTCTTTTAATATTTTAATGCTTCAAAGACGACTTGAATTCAACTTGAGGTAAGATAAGAAGATATTGGAAAACTATTTAAAAAAAAGGGGGAGCAAATAAATCAAAGCATTTAACAATAGTTTTATCTTTAATTTATCGTCACTAAAGTTAAACACTTTATTCCTTTTTCCTTTTTCCTTCTTCCTCTTCCTTTTTTTTAAGGGGATCAAAATTACTTCATTATTTTGGTATTATATAATTCAAGCATCATTGGAAATTTGCAACTAAGTCCCACATTGGCTATAAAGGAAATTGTTGGAGATAATGCTCAAATAAGAACTGAATTACACTGGTAAACTGATTATACCTTAACTGGATACTAACAATTACAGTGTAAATAACAATACAGACACTGTATATATGATAAATGTTGCAAAATATATTGACAATAATAGTCGAGGCACGCTTACAAAGCACTGTCCTGAAGACAATTATTCGCTCTGCACAGGTTGAAAGCAGGCTACATCGATCGTCTCAGTAGGATACAACGACTAATTCTGGTAGAACAGCAACCTCGAACTACTCGGATCTGGCAGAACTCTTGGATACTTGCTCTCAACTTGACTCAAGATCAAAAGAAACAAAGAAAGAAGGAAGAATACTCCAAATGGAATCGGATGATTCAAATGAAGAAACAAGTTGCTATTTATAGGCTAGCAACTTAG

mRNA sequence

ATGGCAGCAGCTTCTTCCACAGGATTAAAGGGGAAGATCTCAAGCCTTCCCCCAAAACGGGGTCGTATTAAGGCTCAGATTTTTGAGAGCCTTGTCAACTCGGCAGCCTTGGCCGCCTTCATGGCCGAAGAAATCCTCTGCAGAGTCATCCGAGACCTCGTCGGCGCCGGCAGAACCGACGCCGTCACGCCGCCTTCTCCGCCGGCGCCGCCACCTCCTCTTATTTTTGATGGAGGCTCCGTCGTCACTCCCACATTGGCTATAAAGGAAATTGTTGGAGATAATGCTCAAATAAGAACTGAATTACACTGGTTGAAAGCAGGCTACATCGATCGTCTCAGTAGGATACAACGACTAATTCTGGTAGAACAGCAACCTCGAACTACTCGGATCTGGCAGAACTCTTGGATACTTGCTCTCAACTTGACTCAAGATCAAAAGAAACAAAGAAAGAAGGAAGAATACTCCAAATGGAATCGGATGATTCAAATGAAGAAACAAGTTGCTATTTATAGGCTAGCAACTTAG

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACAGGATTAAAGGGGAAGATCTCAAGCCTTCCCCCAAAACGGGGTCGTATTAAGGCTCAGATTTTTGAGAGCCTTGTCAACTCGGCAGCCTTGGCCGCCTTCATGGCCGAAGAAATCCTCTGCAGAGTCATCCGAGACCTCGTCGGCGCCGGCAGAACCGACGCCGTCACGCCGCCTTCTCCGCCGGCGCCGCCACCTCCTCTTATTTTTGATGGAGGCTCCGTCGTCACTCCCACATTGGCTATAAAGGAAATTGTTGGAGATAATGCTCAAATAAGAACTGAATTACACTGGTTGAAAGCAGGCTACATCGATCGTCTCAGTAGGATACAACGACTAATTCTGGTAGAACAGCAACCTCGAACTACTCGGATCTGGCAGAACTCTTGGATACTTGCTCTCAACTTGACTCAAGATCAAAAGAAACAAAGAAAGAAGGAAGAATACTCCAAATGGAATCGGATGATTCAAATGAAGAAACAAGTTGCTATTTATAGGCTAGCAACTTAG

Protein sequence

MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTDAVTPPSPPAPPPPLIFDGGSVVTPTLAIKEIVGDNAQIRTELHWLKAGYIDRLSRIQRLILVEQQPRTTRIWQNSWILALNLTQDQKKQRKKEEYSKWNRMIQMKKQVAIYRLAT
Homology
[Close]
BLAST of Spg027511 vs. NCBI nr
Match: KAE8653222.1 (hypothetical protein Csa_019661, partial [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-22
Identity = 62/77 (80.52%), Postives = 65/77 (84.42%), Query Frame = 0 

Query: 4  ASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTDAVT 63
          ASST  KGKIS+LPPKRGRIKAQIFESLVNSAALAAFMAEEILCR+IRDLV   RT  V 
Sbjct: 1  ASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTVDVP 60

Query: 64 PPSPPAPPPPLIFDGGS 81
          PP+P  PPPPLIF G S
Sbjct: 61 PPTPARPPPPLIFHGSS 77

[Close]
BLAST of Spg027511 vs. NCBI nr
Match: KAG6583308.1 (hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 6.3e-16
Identity = 58/84 (69.05%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTD 60
          MAAA STGLK  ISSLPP+RGRIKA+IFESLVNSAAL       IL +VIR LV   +  
Sbjct: 1  MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGAQIR 60

Query: 61 AVTPPSPPA-PPPPLIFDGGSVVT 84
          AV PPSP A PPPPL +DGGSVVT
Sbjct: 61 AVLPPSPMAPPPPPLRYDGGSVVT 77

[Close]
BLAST of Spg027511 vs. NCBI nr
Match: KAG6583309.1 (hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-15
Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTD 60
          MAAA STGLK  ISSLPP+RGRIKA+IFESLVNSAAL       IL +VIR LV   R  
Sbjct: 1  MAAARSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGARVH 60

Query: 61 AVTPPSPPAP-PPPLIFDGGSVVT 84
          AV  PSP AP PPPL +DGGSVVT
Sbjct: 61 AVPLPSPVAPLPPPLRYDGGSVVT 77

[Close]
BLAST of Spg027511 vs. NCBI nr
Match: KAG6583472.1 (hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-14
Identity = 56/84 (66.67%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTD 60
          MAAA S GLK  ISSLPP+RGRIKA+IFESLVNSAAL       IL +VIR LV + +  
Sbjct: 1  MAAAPSMGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILLKVIRYLVSSAQIR 60

Query: 61 AVTPPSPPA-PPPPLIFDGGSVVT 84
          AV  PSP A PPPPL +DGGSVVT
Sbjct: 61 AVPLPSPVAPPPPPLRYDGGSVVT 77

[Close]
BLAST of Spg027511 vs. ExPASy TrEMBL
Match: A0A0A0LS06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0 

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRVIRDLVGAGRTD 60
          MAAASST  KGKI +LPPKRGRIKAQI ESLVNSAALA FMAEEILCR IRDLV + RT 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSART- 60

Query: 61 AVTPPSPPAPPPPLIFDGGS 81
             PP  PAPPPPLIF G S
Sbjct: 61 VDAPPPYPAPPPPLIFHGVS 79

The following BLAST results are available for this feature:
BLAST of Spg027511 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653222.12.0e-2280.52hypothetical protein Csa_019661, partial [Cucumis sativus][more]
KAG6583308.16.3e-1669.05hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583309.11.8e-1569.05hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583472.12.6e-1466.67hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Spg027511 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027511 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS062.0e-2077.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1[more]
BLAST of Spg027511 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027511.1Spg027511.1mRNA