Spg027403 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg027403
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold7: 42149539 .. 42151533 (-)
RNA-Seq Expression	Spg027403
Synteny	Spg027403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTAATGCATTGATAGAGTCTGATGATACAAACATCCCAACCTCCGAGGCACGCCCATGTGCTTCGTGTTGCATGTCTATCGGATTTTCTGATGAAGATTTGTTGCTAGGGTCAAAGCCACACAATAGACCTCTATTCGTCTCAGGATATATTCGAGAACAAAGGGTTAGCCGGATCCTCATCGATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAGTTAGGCATCTTAATGGAGGAACTATCAAACAGTAAGTTAGTGATCCAAGGCTTCAATCAGGGTGGACAACGGGCAATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAAGCTGATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAACTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCCACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGACACCAACCCATTTTCAGAAGCTGAGTCTCATTTCGCTGATGCAAAGTTTTATCTGAAGAATGAAAACACAGGGGAAACCATACCTGCAGAAATCCCCTTGATAAAAAAAAATGATAAACTCGATTTGGAGCTTCATGCAGATGCAAGAAAAGAAGCTGTTAAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGATGTTGAAATTTTGAAGGAAAGTTTCGCTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCCGAGGATGATCAGATAAAAGCGATTTTGCCTGACAGACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCAAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTGATGGAAGAGCTGAGCTCTCTGCAACACAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA

mRNA sequence

ATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCCTTCATGCAGATGCAAGAAAAGAAGCTGTTAAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA

Coding sequence (CDS)

ATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCCTTCATGCAGATGCAAGAAAAGAAGCTGTTAAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA

Protein sequence

MRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSLHADARKEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVARPSVFQRLSVTTRRDKKE

Homology

[Close]

BLAST of Spg027403 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-42
Identity = 177/609 (29.06%), Postives = 242/609 (39.74%), Query Frame = 0


Query: 5   QGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM 64
           Q K   IE+++E WT+V RRKK+K +  +KE R +R+ +R  K+QK K KKK+R+ K + 
Sbjct: 364 QEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLMH 423

Query: 65  EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPG 124
           +E +DF  + + ITLA++FP RFL D Q E    V CH ++  E++ +P  S     V  
Sbjct: 424 KEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVSK 483

Query: 125 DLSSFSIKDLLSLPQEAKSL---------------------------------------- 184
           DLS F++ DLLSLPQE K++                                        
Sbjct: 484 DLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLGS 543

Query: 185 ------------------------------------------------------------ 244
                                                                       
Sbjct: 544 KLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQG 603

Query: 245 ------------------------HADAR------------------------------- 304
                                    ADA+                               
Sbjct: 604 SQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSLA 663

Query: 305 -KEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSES 364
            KE    + T   +K EASTS AK  ++ DEK SN  ILRYVPLSRRKKGESPF E  + 
Sbjct: 664 SKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQG 723

Query: 365 IK---------------------------------------------------------- 373
           +K                                                          
Sbjct: 724 LKVGDIEVLKESFTTPLTKITKQEIKIDLTEASLPQRRTKDEFDPKAYKLMAKAGYDFTT 783

[Close]

BLAST of Spg027403 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 4.9e-42
Identity = 113/252 (44.84%), Postives = 145/252 (57.54%), Query Frame = 0


Query: 148 ARKEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 207
           A KE  K + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 208 SIK-------------------------------------------KKLLKEGYSLPTTR 267
            +K                                           KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 268 KGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALV 327
           KGLGYKSPEP+RIT +GK KV + NHITV+EVD  +EKE  +QRTS F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

Query: 328 FQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRK 357
           F+RLS+ E + +  Q T +  R S F+RL++  +EE+    T   T+PSAF+RL++  +K
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKK 427

[Close]

BLAST of Spg027403 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-41
Identity = 155/479 (32.36%), Postives = 212/479 (44.26%), Query Frame = 0


Query: 5   QGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM 64
           Q K   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+QK K KKK+R+ K V 
Sbjct: 468 QEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLVH 527

Query: 65  EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVT-----------------CHIVDVV 124
           E+ +DF  + + +TLA++FP RFL D Q E    V                  C  +D  
Sbjct: 528 EKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDFS 587

Query: 125 EDD-----------------------------------DVPTSSSGTVAV---------- 184
           ++D                                    +P S+   + +          
Sbjct: 588 DEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSKL 647

Query: 185 ---------------------PGDLSSFSIKDLLSLPQEAKSLHADARKEAVKDMDTSDL 244
                                 G     S++  L   ++   L + A +E+ K   T   
Sbjct: 648 VIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHS 707

Query: 245 KKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK----------- 304
            K EASTS AK  +V DEK SN PILRYVPLSRRKKGESPF E  + +K           
Sbjct: 708 GKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESF 767

Query: 305 ------------------------------------------------------------ 324
                                                                       
Sbjct: 768 TTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQP 827

[Close]

BLAST of Spg027403 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-41
Identity = 176/636 (27.67%), Postives = 235/636 (36.95%), Query Frame = 0


Query: 4    PQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPV 63
            PQG+   IE+++EGW +V  RKK++    ++ESR +++ +R  K+QK K KKK+ + K V
Sbjct: 562  PQGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLV 621

Query: 64   MEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVP 123
              E  +F    + +TLA++ P+ FL D Q E  E V CH ++  E++ +P  S     V 
Sbjct: 622  HNEDMNFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVS 681

Query: 124  GDLSSFSIKDLLSLPQEAKSLHADA----------------------------------- 183
             DLS F+++DLLSLPQE K++  DA                                   
Sbjct: 682  KDLSRFNVEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLG 741

Query: 184  --------------RKEAV----------------------------------------- 243
                          R++ V                                         
Sbjct: 742  SKLHNRPLYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQ 801

Query: 244  ------------------------------------------------------------ 303
                                                                        
Sbjct: 802  GSQRAIGMIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQ 861

Query: 304  -------------------------------------------KDMDTSDLK-------- 353
                                                       K  D S LK        
Sbjct: 862  DGVKKVEADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPH 921

[Close]

BLAST of Spg027403 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 3.2e-41
Identity = 175/636 (27.52%), Postives = 235/636 (36.95%), Query Frame = 0


Query: 4    PQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPV 63
            PQG+   IE+++EGW +V  RKK++    ++ESR +++ +R  K+QK K KKK+ + K V
Sbjct: 562  PQGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLV 621

Query: 64   MEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVP 123
              E  +F    + +TLA++ P+ FL D Q E  E V CH ++  E++ +P  S     V 
Sbjct: 622  HNEDMNFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVS 681

Query: 124  GDLSSFSIKDLLSLPQEAKSLHADA----------------------------------- 183
             DLS F+++DLLSLPQE K++  DA                                   
Sbjct: 682  KDLSRFNVEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLG 741

Query: 184  --------------RKEAV----------------------------------------- 243
                          R++ V                                         
Sbjct: 742  SKLHNRPLYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQ 801

Query: 244  ------------------------------------------------------------ 303
                                                                        
Sbjct: 802  GSQRAIGMIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQ 861

Query: 304  -------------------------------------------KDMDTSDLK-------- 353
                                                       K  D S LK        
Sbjct: 862  DGVKKVEADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPH 921

[Close]

BLAST of Spg027403 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-42
Identity = 177/609 (29.06%), Postives = 242/609 (39.74%), Query Frame = 0


Query: 5   QGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM 64
           Q K   IE+++E WT+V RRKK+K +  +KE R +R+ +R  K+QK K KKK+R+ K + 
Sbjct: 364 QEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLMH 423

Query: 65  EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPG 124
           +E +DF  + + ITLA++FP RFL D Q E    V CH ++  E++ +P  S     V  
Sbjct: 424 KEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVSK 483

Query: 125 DLSSFSIKDLLSLPQEAKSL---------------------------------------- 184
           DLS F++ DLLSLPQE K++                                        
Sbjct: 484 DLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLGS 543

Query: 185 ------------------------------------------------------------ 244
                                                                       
Sbjct: 544 KLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQG 603

Query: 245 ------------------------HADAR------------------------------- 304
                                    ADA+                               
Sbjct: 604 SQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSLA 663

Query: 305 -KEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSES 364
            KE    + T   +K EASTS AK  ++ DEK SN  ILRYVPLSRRKKGESPF E  + 
Sbjct: 664 SKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQG 723

Query: 365 IK---------------------------------------------------------- 373
           +K                                                          
Sbjct: 724 LKVGDIEVLKESFTTPLTKITKQEIKIDLTEASLPQRRTKDEFDPKAYKLMAKAGYDFTT 783

[Close]

BLAST of Spg027403 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-42
Identity = 113/252 (44.84%), Postives = 145/252 (57.54%), Query Frame = 0


Query: 148 ARKEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 207
           A KE  K + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 208 SIK-------------------------------------------KKLLKEGYSLPTTR 267
            +K                                           KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 268 KGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALV 327
           KGLGYKSPEP+RIT +GK KV + NHITV+EVD  +EKE  +QRTS F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

Query: 328 FQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRK 357
           F+RLS+ E + +  Q T +  R S F+RL++  +EE+    T   T+PSAF+RL++  +K
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKK 427

[Close]

BLAST of Spg027403 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.3e-42
Identity = 155/479 (32.36%), Postives = 212/479 (44.26%), Query Frame = 0


Query: 5   QGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM 64
           Q K   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+QK K KKK+R+ K V 
Sbjct: 468 QEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLVH 527

Query: 65  EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVT-----------------CHIVDVV 124
           E+ +DF  + + +TLA++FP RFL D Q E    V                  C  +D  
Sbjct: 528 EKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDFS 587

Query: 125 EDD-----------------------------------DVPTSSSGTVAV---------- 184
           ++D                                    +P S+   + +          
Sbjct: 588 DEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSKL 647

Query: 185 ---------------------PGDLSSFSIKDLLSLPQEAKSLHADARKEAVKDMDTSDL 244
                                 G     S++  L   ++   L + A +E+ K   T   
Sbjct: 648 VIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHS 707

Query: 245 KKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK----------- 304
            K EASTS AK  +V DEK SN PILRYVPLSRRKKGESPF E  + +K           
Sbjct: 708 GKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESF 767

Query: 305 ------------------------------------------------------------ 324
                                                                       
Sbjct: 768 TTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQP 827

[Close]

BLAST of Spg027403 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-41
Identity = 113/262 (43.13%), Postives = 146/262 (55.73%), Query Frame = 0


Query: 148 ARKEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 207
           A KE  K + T    K EAST+ AK  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 152 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 211

Query: 208 SIK-----------------------------------------------------KKLL 267
            +K                                                     KKLL
Sbjct: 212 GLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLL 271

Query: 268 KEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRR 327
           +EG+ +P +RKGLGYKSPEP+RIT +GK KV ++NHITV+EVD  +EKE  +QRTS F R
Sbjct: 272 REGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDR 331

Query: 328 IRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSA 357
           I P VARA VF+RLS+ E E +  Q T +  + S F+RL++  +EE+    T   T+PSA
Sbjct: 332 ISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSA 391

[Close]

BLAST of Spg027403 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-40
Identity = 115/260 (44.23%), Postives = 155/260 (59.62%), Query Frame = 0


Query: 106 VVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSLHADARKEAVKDMDTSDLKKGE 165
           V+++     + +   AVP ++   + +D L L    KSL   A KE  K + T   +KGE
Sbjct: 21  VIDEKFYLKNDNSPEAVPVEIPLVNREDNLQL----KSL---ASKEPHKSIGTFHSRKGE 80

Query: 166 ASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------KK 225
           ASTS  K  ++ DEK SN  ILRYVPLSRR+KGESPF +  + +K             KK
Sbjct: 81  ASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLSLIQKK 140

Query: 226 LLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVF 285
           LL+EG+ +P +RKG GYKSPEP+ I  + K KV ++NHITV EVD  +EKE   QR S F
Sbjct: 141 LLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQRISAF 200

Query: 286 RRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRP 345
            +IRP V R  VF+RLSV +TE +  Q T S  + S  +RL+M  ++E+ T      TRP
Sbjct: 201 DQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLTMTFKKEKCTCQALRATRP 260

Query: 346 SAFQRLNVPMRKEESTFSAP 353
           SAF+RL+V  +K+  T   P
Sbjct: 261 SAFERLSVAKQKDAQTPRVP 273

The following BLAST results are available for this feature:

BLAST of Spg027403 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05005.1	2.9e-42	29.06	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055957.1	4.9e-42	44.84	uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]	[more]
KAA0061113.1	1.1e-41	32.36	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
XP_031735972.1	1.4e-41	27.67	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031739134.1	3.2e-41	27.52	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]

BLAST of Spg027403 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg027403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0W6	1.4e-42	29.06	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UMY2	2.4e-42	44.84	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BY54	5.3e-42	32.36	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DXC7	2.6e-41	43.13	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7TPR5	2.2e-40	44.23	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Spg027403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..356
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..311
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..335

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg027403.1	Spg027403.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process