Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTAATGCATTGATAGAGTCTGATGATACAAACATCCCAACCTCCGAGGCACGCCCATGTGCTTCGTGTTGCATGTCTATCGGATTTTCTGATGAAGATTTGTTGCTAGGGTCAAAGCCACACAATAGACCTCTATTCGTCTCAGGATATATTCGAGAACAAAGGGTTAGCCGGATCCTCATCGATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAGTTAGGCATCTTAATGGAGGAACTATCAAACAGTAAGTTAGTGATCCAAGGCTTCAATCAGGGTGGACAACGGGCAATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAAGCTGATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAACTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCCACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGACACCAACCCATTTTCAGAAGCTGAGTCTCATTTCGCTGATGCAAAGTTTTATCTGAAGAATGAAAACACAGGGGAAACCATACCTGCAGAAATCCCCTTGATAAAAAAAAATGATAAACTCGATTTGGAGCTTCATGCAGATGCAAGAAAAGAAGCTGTTAAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGATGTTGAAATTTTGAAGGAAAGTTTCGCTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCCGAGGATGATCAGATAAAAGCGATTTTGCCTGACAGACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCAAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTGATGGAAGAGCTGAGCTCTCTGCAACACAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA
mRNA sequence
ATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCCTTCATGCAGATGCAAGAAAAGAAGCTGTTAAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA
Coding sequence (CDS)
ATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCCTTCATGCAGATGCAAGAAAAGAAGCTGTTAAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA
Protein sequence
MRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSLHADARKEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVARPSVFQRLSVTTRRDKKE
Homology
BLAST of Spg027403 vs. NCBI nr
Match:
TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 183.7 bits (465), Expect = 2.9e-42
Identity = 177/609 (29.06%), Postives = 242/609 (39.74%), Query Frame = 0
Query: 5 QGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM 64
Q K IE+++E WT+V RRKK+K + +KE R +R+ +R K+QK K KKK+R+ K +
Sbjct: 364 QEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLMH 423
Query: 65 EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPG 124
+E +DF + + ITLA++FP RFL D Q E V CH ++ E++ +P S V
Sbjct: 424 KEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVSK 483
Query: 125 DLSSFSIKDLLSLPQEAKSL---------------------------------------- 184
DLS F++ DLLSLPQE K++
Sbjct: 484 DLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLGS 543
Query: 185 ------------------------------------------------------------ 244
Sbjct: 544 KLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQG 603
Query: 245 ------------------------HADAR------------------------------- 304
ADA+
Sbjct: 604 SQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSLA 663
Query: 305 -KEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSES 364
KE + T +K EASTS AK ++ DEK SN ILRYVPLSRRKKGESPF E +
Sbjct: 664 SKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQG 723
Query: 365 IK---------------------------------------------------------- 373
+K
Sbjct: 724 LKVGDIEVLKESFTTPLTKITKQEIKIDLTEASLPQRRTKDEFDPKAYKLMAKAGYDFTT 783
BLAST of Spg027403 vs. NCBI nr
Match:
KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])
HSP 1 Score: 183.0 bits (463), Expect = 4.9e-42
Identity = 113/252 (44.84%), Postives = 145/252 (57.54%), Query Frame = 0
Query: 148 ARKEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 207
A KE K + T K EAST+ AK ++ DEK SN PILRYVPLSRRKKGESPF E +
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247
Query: 208 SIK-------------------------------------------KKLLKEGYSLPTTR 267
+K KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307
Query: 268 KGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALV 327
KGLGYKSPEP+RIT +GK KV + NHITV+EVD +EKE +QRTS F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367
Query: 328 FQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRK 357
F+RLS+ E + + Q T + R S F+RL++ +EE+ T T+PSAF+RL++ +K
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKK 427
BLAST of Spg027403 vs. NCBI nr
Match:
KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 181.8 bits (460), Expect = 1.1e-41
Identity = 155/479 (32.36%), Postives = 212/479 (44.26%), Query Frame = 0
Query: 5 QGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM 64
Q K IE+++EGWT+V RRKK+K + +KESRL+ + +R K+QK K KKK+R+ K V
Sbjct: 468 QEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLVH 527
Query: 65 EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVT-----------------CHIVDVV 124
E+ +DF + + +TLA++FP RFL D Q E V C +D
Sbjct: 528 EKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDFS 587
Query: 125 EDD-----------------------------------DVPTSSSGTVAV---------- 184
++D +P S+ + +
Sbjct: 588 DEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSKL 647
Query: 185 ---------------------PGDLSSFSIKDLLSLPQEAKSLHADARKEAVKDMDTSDL 244
G S++ L ++ L + A +E+ K T
Sbjct: 648 VIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHS 707
Query: 245 KKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK----------- 304
K EASTS AK +V DEK SN PILRYVPLSRRKKGESPF E + +K
Sbjct: 708 GKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESF 767
Query: 305 ------------------------------------------------------------ 324
Sbjct: 768 TTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQP 827
BLAST of Spg027403 vs. NCBI nr
Match:
XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])
HSP 1 Score: 181.4 bits (459), Expect = 1.4e-41
Identity = 176/636 (27.67%), Postives = 235/636 (36.95%), Query Frame = 0
Query: 4 PQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPV 63
PQG+ IE+++EGW +V RKK++ ++ESR +++ +R K+QK K KKK+ + K V
Sbjct: 562 PQGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLV 621
Query: 64 MEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVP 123
E +F + +TLA++ P+ FL D Q E E V CH ++ E++ +P S V
Sbjct: 622 HNEDMNFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVS 681
Query: 124 GDLSSFSIKDLLSLPQEAKSLHADA----------------------------------- 183
DLS F+++DLLSLPQE K++ DA
Sbjct: 682 KDLSRFNVEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLG 741
Query: 184 --------------RKEAV----------------------------------------- 243
R++ V
Sbjct: 742 SKLHNRPLYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQ 801
Query: 244 ------------------------------------------------------------ 303
Sbjct: 802 GSQRAIGMIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQ 861
Query: 304 -------------------------------------------KDMDTSDLK-------- 353
K D S LK
Sbjct: 862 DGVKKVEADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPH 921
BLAST of Spg027403 vs. NCBI nr
Match:
XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])
HSP 1 Score: 180.3 bits (456), Expect = 3.2e-41
Identity = 175/636 (27.52%), Postives = 235/636 (36.95%), Query Frame = 0
Query: 4 PQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPV 63
PQG+ IE+++EGW +V RKK++ ++ESR +++ +R K+QK K KKK+ + K V
Sbjct: 562 PQGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLV 621
Query: 64 MEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVP 123
E +F + +TLA++ P+ FL D Q E E V CH ++ E++ +P S V
Sbjct: 622 HNEDMNFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVS 681
Query: 124 GDLSSFSIKDLLSLPQEAKSLHADA----------------------------------- 183
DLS F+++DLLSLPQE K++ DA
Sbjct: 682 KDLSRFNVEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLG 741
Query: 184 --------------RKEAV----------------------------------------- 243
R++ V
Sbjct: 742 SKLHNRPLYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQ 801
Query: 244 ------------------------------------------------------------ 303
Sbjct: 802 GSQRAIGMIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQ 861
Query: 304 -------------------------------------------KDMDTSDLK-------- 353
K D S LK
Sbjct: 862 DGVKKVEADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPH 921
BLAST of Spg027403 vs. ExPASy TrEMBL
Match:
A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)
HSP 1 Score: 183.7 bits (465), Expect = 1.4e-42
Identity = 177/609 (29.06%), Postives = 242/609 (39.74%), Query Frame = 0
Query: 5 QGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM 64
Q K IE+++E WT+V RRKK+K + +KE R +R+ +R K+QK K KKK+R+ K +
Sbjct: 364 QEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLMH 423
Query: 65 EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPG 124
+E +DF + + ITLA++FP RFL D Q E V CH ++ E++ +P S V
Sbjct: 424 KEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVSK 483
Query: 125 DLSSFSIKDLLSLPQEAKSL---------------------------------------- 184
DLS F++ DLLSLPQE K++
Sbjct: 484 DLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLGS 543
Query: 185 ------------------------------------------------------------ 244
Sbjct: 544 KLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQG 603
Query: 245 ------------------------HADAR------------------------------- 304
ADA+
Sbjct: 604 SQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSLA 663
Query: 305 -KEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSES 364
KE + T +K EASTS AK ++ DEK SN ILRYVPLSRRKKGESPF E +
Sbjct: 664 SKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQG 723
Query: 365 IK---------------------------------------------------------- 373
+K
Sbjct: 724 LKVGDIEVLKESFTTPLTKITKQEIKIDLTEASLPQRRTKDEFDPKAYKLMAKAGYDFTT 783
BLAST of Spg027403 vs. ExPASy TrEMBL
Match:
A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)
HSP 1 Score: 183.0 bits (463), Expect = 2.4e-42
Identity = 113/252 (44.84%), Postives = 145/252 (57.54%), Query Frame = 0
Query: 148 ARKEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 207
A KE K + T K EAST+ AK ++ DEK SN PILRYVPLSRRKKGESPF E +
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247
Query: 208 SIK-------------------------------------------KKLLKEGYSLPTTR 267
+K KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307
Query: 268 KGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALV 327
KGLGYKSPEP+RIT +GK KV + NHITV+EVD +EKE +QRTS F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367
Query: 328 FQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRK 357
F+RLS+ E + + Q T + R S F+RL++ +EE+ T T+PSAF+RL++ +K
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKK 427
BLAST of Spg027403 vs. ExPASy TrEMBL
Match:
A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 5.3e-42
Identity = 155/479 (32.36%), Postives = 212/479 (44.26%), Query Frame = 0
Query: 5 QGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM 64
Q K IE+++EGWT+V RRKK+K + +KESRL+ + +R K+QK K KKK+R+ K V
Sbjct: 468 QEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLVH 527
Query: 65 EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVT-----------------CHIVDVV 124
E+ +DF + + +TLA++FP RFL D Q E V C +D
Sbjct: 528 EKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDFS 587
Query: 125 EDD-----------------------------------DVPTSSSGTVAV---------- 184
++D +P S+ + +
Sbjct: 588 DEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSKL 647
Query: 185 ---------------------PGDLSSFSIKDLLSLPQEAKSLHADARKEAVKDMDTSDL 244
G S++ L ++ L + A +E+ K T
Sbjct: 648 VIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHS 707
Query: 245 KKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK----------- 304
K EASTS AK +V DEK SN PILRYVPLSRRKKGESPF E + +K
Sbjct: 708 GKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESF 767
Query: 305 ------------------------------------------------------------ 324
Sbjct: 768 TTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQP 827
BLAST of Spg027403 vs. ExPASy TrEMBL
Match:
A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)
HSP 1 Score: 179.5 bits (454), Expect = 2.6e-41
Identity = 113/262 (43.13%), Postives = 146/262 (55.73%), Query Frame = 0
Query: 148 ARKEAVKDMDTSDLKKGEASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 207
A KE K + T K EAST+ AK ++ DEK SN PILRYVPLSRRKKGESPF E +
Sbjct: 152 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 211
Query: 208 SIK-----------------------------------------------------KKLL 267
+K KKLL
Sbjct: 212 GLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLL 271
Query: 268 KEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRR 327
+EG+ +P +RKGLGYKSPEP+RIT +GK KV ++NHITV+EVD +EKE +QRTS F R
Sbjct: 272 REGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDR 331
Query: 328 IRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSA 357
I P VARA VF+RLS+ E E + Q T + + S F+RL++ +EE+ T T+PSA
Sbjct: 332 ISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSA 391
BLAST of Spg027403 vs. ExPASy TrEMBL
Match:
A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)
HSP 1 Score: 176.4 bits (446), Expect = 2.2e-40
Identity = 115/260 (44.23%), Postives = 155/260 (59.62%), Query Frame = 0
Query: 106 VVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSLHADARKEAVKDMDTSDLKKGE 165
V+++ + + AVP ++ + +D L L KSL A KE K + T +KGE
Sbjct: 21 VIDEKFYLKNDNSPEAVPVEIPLVNREDNLQL----KSL---ASKEPHKSIGTFHSRKGE 80
Query: 166 ASTSLAKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------KK 225
ASTS K ++ DEK SN ILRYVPLSRR+KGESPF + + +K KK
Sbjct: 81 ASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLSLIQKK 140
Query: 226 LLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVF 285
LL+EG+ +P +RKG GYKSPEP+ I + K KV ++NHITV EVD +EKE QR S F
Sbjct: 141 LLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQRISAF 200
Query: 286 RRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRP 345
+IRP V R VF+RLSV +TE + Q T S + S +RL+M ++E+ T TRP
Sbjct: 201 DQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLTMTFKKEKCTCQALRATRP 260
Query: 346 SAFQRLNVPMRKEESTFSAP 353
SAF+RL+V +K+ T P
Sbjct: 261 SAFERLSVAKQKDAQTPRVP 273
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK05005.1 | 2.9e-42 | 29.06 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0055957.1 | 4.9e-42 | 44.84 | uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa] | [more] |
KAA0061113.1 | 1.1e-41 | 32.36 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... | [more] |
XP_031735972.1 | 1.4e-41 | 27.67 | uncharacterized protein LOC116401693 [Cucumis sativus] | [more] |
XP_031739134.1 | 3.2e-41 | 27.52 | uncharacterized protein LOC116402863 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C0W6 | 1.4e-42 | 29.06 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7UMY2 | 2.4e-42 | 44.84 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A5D3BY54 | 5.3e-42 | 32.36 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3DXC7 | 2.6e-41 | 43.13 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A5A7TPR5 | 2.2e-40 | 44.23 | RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |