Spg027385 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg027385
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold7: 42911435 .. 42914819 (-)
RNA-Seq Expression	Spg027385
Synteny	Spg027385

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACGAGTTGCTGCTACAGCCGAGAGTCTGCTACGCACGGGCGGATGAAGGATGGAGAACACACTAGAAGGGTTAGCAACGCGCGAAGGAGAGGGGTTGATAGCCTTAAACCGCTGGTGGTCGTGGGTTGCTCGCCGGAGAAGGGAAGAAAACGGGAGAGAGAGGGAGATAGCCGCGAAGGAGAGAGAAAGAGCGCGCGAGAAGGGCGGTGCGACGGCTGTGTATTGGTGGCGCTTCGAGCATGGGCGACGGCACGACAAGGGCGGTGATGACTGAGTGGTGGTGGCCGGCGAAGGAACACAGCAGGGGGGCTGGTTCACGGCAAAGAGGGAGAGAAAATTTAAAAAAACAAAAAGGGTTGGCGGCTTGCTCACACACGAGAAGAATAAGAGAGAAAAAAAGTTTTATGGCTCACTTTTTTTTTTCTTTTCTTAAATGAAAACCCTAAGAAAGAAAAACCCAATTAAATAGGAATTAGGCTCTTATCTCAAATTTCATTTAAAATCCCAAACTTATCTCCTTAAAATATTTGGGAAAGGAAATAGCCCAATTAATTCCAAAATGACTCGATTTCGAAATGCGGGGCGTTACACTCGGTTGGAGAGATATGTATAGAAAATAATCTAGGACAAGTGGGAGAATTGTAATCGGTATTCGATACCCTACTGTACTCGGTATTGTGATGCCCTAGTTTATTGTATTTGTAAATTGTTATCAATAGAAGTATTTATTCACTCACTGCTATAATGGATTATTGTACACCCCACTAAACTAGGTTTTTAATGCAAGTGGGAGACTGTTGGGATTGGTGCCCTAAAACTCGTAGATAGTGAATGAAACAAATAGTTATATGCTTGTTCAATAAAGTTGTTATCAAGTTTTTCTTCACATAAAGTCATTAAATAAGTGATTTGTAGGTCCATTAGGTCCACCCTGCTAGCTCATACAGAATAAACCTTGGAACAAGTATGATGAAGAGTTTGAGACGTTCAAATTCATTATAGGGAGTTGTCGTTAAATTATATTTGATATATTTAATGTTAAAGTTTAGTTACAAATTAAACCATAATAGAGAGAGTCGGGAATATTTAAATAATATTTAAATATTAGAATTTAATGCTCATATCGACTTAGAATTGAATAATGATTCATATTTCAAAACCGAGTTTAAGGGAAGTCGAGAATGGTGTCGAGAATGGAATAATTCTTTAATTTAATATTTGATATTGAATTAAACTAAATTAGATTTAATTAAATTATTAATTAAATATGAGAAATCTATTTTTAAATTTAATTCAAATTAAATCTCAGTTTTAATTTGTATTTGGATTTCATTTTTCAAGAGGTGGTGAAATGTGAATTTTCACATCTCTTTTCTCCTAGTTTTGACACCTCCATGGACACCTCAAACAAGACAATATGTTGTCTTCTTCAAATAGCACCATATGCATATGTTTCTTCTATATAAGAAGAAGAAAAACGTGATGGAAGCTGATGAAGAAGATGAAGAATTTCTCTCTCAAGTTCACAAGCTAAAACTCTCAGAATAAGAAGAAACTCTCCCAAATTCATCACAAATTTGTGTCCCACAACACGTTCTAAGGCCAGTGGATAGTGGGGAAGATCACGGTGGTCGTCCACAAGTAATTAGTGCTGGGATTTCATCCATAGAGTGCTCGAATTTCTTCCCAAAAGGTTGGTAATTTTCTGCTATGTTTTTTAGTTGTTATTTAAGCATGCTTTAGTTCTAAAATTATTTGAAATTGAGAGGCTTTCGATCCAAATTGCTTTCGCTCGGGTGTTCTACACTCCTTCTATGGCAAGTCCATCGTTAATTTGTATGTTAAATTAGCGTAGATTATTGATAAGCCTAAGATAAATGGAAAAGTTGTAAATGAATTAATTTGTGACTCCAAGTCCTCAAACCCAGAGTTCAATTGGAAGGCAATGTTACGTTGTTCAAGAATCTCCAAGGGTAATTTTTTTCTAATATATATTTATTAAAACCTTAGAATTAATATGTTTATGTTTCACACTCGATGAACATGGCAACTATTGTATGGTTTGGGTATGCTGTGAGGCGTGTAATGTGTTTGATATATTGTTGCATATTTGTTTCTTCAACTCTTTAAATGCATTGTATCTTTTCCAATTAATGTTTTTGAAATCATGGATACCAATTGAAAATAAAAATAAACAATTTTTATCAAATTTTTTTTTTAAGGAAATATCTATCACTTGAATAATCAGGAATAGTTAACACTAAAAGATGAAGAATTTGCTTTGTTGTGATCTTGGCAAATGGTTTTGTCAACCGAGACAACTATCTTCGTCTTTATTTTCAATACATTTATGATAACCAAATAGTTTGATTTCATATGCTATTTACCATTTTCAAAAACCATTCCAATTAAAGGAGAGAAAGGAACCATGAAAAAGCATTTTCTTTATCCAATTGTGTTGGAAAAAAAACTTGTCAATATATAACAAACAAAGATCACTCCATCCAAATATAGAAAAATAGTGAAGAACTAAATTTATCACTAAATGTTCTAAATTTAACAAATGATAGCCTATAAAATGGCCTCCCATCAGATCAAACAATCATCTGCTTGTGATCTAAGAAATAAAAAAAAAAATAAAATTCCAAGAGAAGACAAAAGGAGATTAACCAACAAAATGGCCAAGAAAATTATGGCAACATTGCTAGTGTGCATTATGGTGGTGGCCATACTACAATTCTCTACAGCCAACAACTATGAGGCCATGATGGCCAGAGCGAAGACCTTGGAGAGTGCCCTTACCTGCTTTAAAACTTGCACTGACCAATGTAAAGCCAAAGGCAACAAGTCCTTTGAGGATTGTGTGCCACCATGCAAACATTGTGGCAAGGAAATGATGGGTATGTGTTTTCCTTTCATCATAAAAAACTCAATTCATAACCATGTACATGTTAAGATGTTTCCATTTTTATCACACACTTTGTACGTCGAATGGATTGATTTGTTTTTTTTTTTTTTTTTTTTTTTGTAACAAAACGAGGTTATCGTAGATTATAAAATAAAAAATTGTGAATGGAGGTAGAGTTATTCAATAGACAATTTTGTGTTTGGTGAAGGTTAATTTCATTTTGCACCTGACTCTTATTATTTGTTGACTGAGTGTTTGAAGTTTTTTACATTGTTTGTCTTACTTAACATTGGATGAGTGTGAAATTGATAATTTTCCTTCAAAATTTATACCAAGATTTCAAGTAAAATTTTCTCCCATTTTATTTTGTCGTTTTGTTTTTTACCTTCTTTGATTAATATTAATATTTTTTGTGTTTACTTTGTAGAGAAATACAACGTCGATCTAACCGCCGAATCCGTTCAAAATTGA

mRNA sequence

ATGACGACGAGTTGCTGCTACAGCCGAGAGTCTGCTACGCACGGGCGGATGAAGGATGGAGAACACACTAGAAGGGTTAGCAACGCGCGAAGGAGAGGGGTTGATAGCCTTAAACCGCTGGTGGTCGTGGGTTGCTCGCCGGAGAAGGGAAGAAAACGGGAGAGAGAGGGAGATAGCCGCGAAGGAGAGAGAAAGAGCGCGCGAGAAGGGCGGTGCGACGGCTGTGTATTGGTGGCGCTTCGAGCATGGGCGACGGCACGACAAGGGCGGCCAGTGGATAGTGGGGAAGATCACGGTGGTCGTCCACAAGTAATTAGTGCTGGGATTTCATCCATAGAGTGCTCGAATTTCTTCCCAAAAGCCTATAAAATGGCCTCCCATCAGATCAAACAATCATCTGCTTGTGATCTAAGAAATAAAAAAAAAAATAAAATTCCAAGAGAAGACAAAAGGAGATTAACCAACAAAATGGCCAAGAAAATTATGGCAACATTGCTAGTGTGCATTATGGTGGTGGCCATACTACAATTCTCTACAGCCAACAACTATGAGGCCATGATGGCCAGAGCGAAGACCTTGGAGAGTGCCCTTACCTGCTTTAAAACTTGCACTGACCAATGTAAAGCCAAAGGCAACAAGTCCTTTGAGGATTGTGTGCCACCATGCAAACATTGTGGCAAGGAAATGATGGAGAAATACAACGTCGATCTAACCGCCGAATCCGTTCAAAATTGA

Coding sequence (CDS)

ATGACGACGAGTTGCTGCTACAGCCGAGAGTCTGCTACGCACGGGCGGATGAAGGATGGAGAACACACTAGAAGGGTTAGCAACGCGCGAAGGAGAGGGGTTGATAGCCTTAAACCGCTGGTGGTCGTGGGTTGCTCGCCGGAGAAGGGAAGAAAACGGGAGAGAGAGGGAGATAGCCGCGAAGGAGAGAGAAAGAGCGCGCGAGAAGGGCGGTGCGACGGCTGTGTATTGGTGGCGCTTCGAGCATGGGCGACGGCACGACAAGGGCGGCCAGTGGATAGTGGGGAAGATCACGGTGGTCGTCCACAAGTAATTAGTGCTGGGATTTCATCCATAGAGTGCTCGAATTTCTTCCCAAAAGCCTATAAAATGGCCTCCCATCAGATCAAACAATCATCTGCTTGTGATCTAAGAAATAAAAAAAAAAATAAAATTCCAAGAGAAGACAAAAGGAGATTAACCAACAAAATGGCCAAGAAAATTATGGCAACATTGCTAGTGTGCATTATGGTGGTGGCCATACTACAATTCTCTACAGCCAACAACTATGAGGCCATGATGGCCAGAGCGAAGACCTTGGAGAGTGCCCTTACCTGCTTTAAAACTTGCACTGACCAATGTAAAGCCAAAGGCAACAAGTCCTTTGAGGATTGTGTGCCACCATGCAAACATTGTGGCAAGGAAATGATGGAGAAATACAACGTCGATCTAACCGCCGAATCCGTTCAAAATTGA

Protein sequence

MTTSCCYSRESATHGRMKDGEHTRRVSNARRRGVDSLKPLVVVGCSPEKGRKREREGDSREGERKSAREGRCDGCVLVALRAWATARQGRPVDSGEDHGGRPQVISAGISSIECSNFFPKAYKMASHQIKQSSACDLRNKKKNKIPREDKRRLTNKMAKKIMATLLVCIMVVAILQFSTANNYEAMMARAKTLESALTCFKTCTDQCKAKGNKSFEDCVPPCKHCGKEMMEKYNVDLTAESVQN

Homology

[Close]

BLAST of Spg027385 vs. NCBI nr
Match: KAG6595587.1 (hypothetical protein SDJN03_12140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-06
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 157 MAKKIMATLLVCIMVVAILQFSTANNYEAMMARAKT-------LESAL-TCFKTCTDQCK 216
           MAKK+MA LL+C+++V+ LQFSTA++   M AR K+       +E+ L +C  TC  +C 
Sbjct: 1   MAKKMMAVLLMCVLLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKLKSCAATCEKECV 60

Query: 217 AKGNKSFEDCVPPCK-HCG-KEMMEKYNVDLT 239
           AKG  S E C P C   CG KE+ EK+N+ LT
Sbjct: 61  AKGETS-ESCKPKCNTDCGKKEVSEKFNIHLT 91

The following BLAST results are available for this feature:

BLAST of Spg027385 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595587.1	1.3e-06	46.74	hypothetical protein SDJN03_12140, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg027385 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg027385 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg027385 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg027385.1	Spg027385.1	mRNA