Spg027363 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027363
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLow temperature and salt responsive protein family
Locationscaffold7: 43402811 .. 43406374 (+)
RNA-Seq ExpressionSpg027363
SyntenySpg027363
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGTTTGGGTGGTTGCCAGTCCGGTTCAAGTAGTTATTGGTCTGGTTCATGACGGTTCGATCCGGTTCAGGGAGCTGATGGTCTGGTTCAAAGGTTCTTAAGAATCCTTGAAAAAGATATATATTTATCAAAGAACATTAAAAACCTTTGAAAATTATATTATCCTTTACCGATGGTATTTAAAAAACCTTTGATAAATATCTACCTTTTATCGAAGGTTCTTAAAAAACTTTTGAAAAAGATATAATATTTGTCAAGGACATTAAAAACCTTTAAAAATTATGTTATCCTTTAGCGAAGGTATTTGAAAAACCTTTGATAAATATCTACCATTTATCGAAGGTTATTAAAAACCTTTGAAAATTATATTATCCTTATCAAATGTTTTGAAAAAAAAAATCCTTTACAAATATATACTTTTTTTTTTATTGAAGGTTATTAAAATCCTTTCAAAAATTTATTGTCTTTTATCAAAAAGCGTTTAAAAATATATAAAAAAAAAAATCAATGAAAATTATTATCCAAAATTTACTTTTTATCGAAGGTTATTGATAACCTTCAATAAAGATATTATATTTATCAAGGGCCACAAAATCCTTCTTATTAATAAAAAAAAATTAAATCGATATTTTAGTTTTTATCGAAGGTTATTAAAAACATTGGATAAAGATGTTTATGAAAAAAAATATTATTCATTATCAAGGTATTTAAAAAACCAACAACATTGAGAAATATGTTTTTCTTTTCTTTTTGGGTTAAAAATAAAAGTTAGGTTTATTTCTATTCTTTTCCTTGGTAAAAGCACGTCAGGTCTGAACACTCTCCCTTTTTGTCCGTCCTCAGTTGTTCGTCGATCGTGATCACTAGCTCGCAGGTCGCCGTCAACCATTCATCCCTCGGAGCTTGCCTCAATTTCAATTGTTGCACGGTAATCTTTATTCTTCTTCCATCTCTCCCTCTAATTTCCCCCAATTTGAACTTCTAGTGACCTAAATTAGTTGAACGAACAAAGTTAGTTTTGCCAGCAATCTGATCTAAAGCGACATCAGAATTAGGTTTTGGTTTCCATTTTGTTCTGCTTTTTTGTGTGGAATTGGTGAAAATGTAGGTGGAATTTTCTGTGTTTGATTTTGACTGCACTCGATTACGTTCCATTCCAGGGATCATCTACACTCTCTATGCCATTGTCTTCGTCGAGTATGCCCGCAGTGATCTTGCTGAGGTGAGTGGAACTGAGAAGAGCTTTGACATGGGATTAATTGAACTGAAGCTTATAATTGAACTAGAGCTTTGCTGAGGTGAGTGGAACTAAGAATGTTATTAATAACCTTTGATAAATATCTACCCTCCATCTTCGCCTTCGACTTGGACTTCGACACAAGGTAATAACATTAGATCTGTCACACTCTGTTTCCATGCTCATCATATTTGACATGTTCGGTTCAATGTTCTTTGTTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTTCCTCCTTAATCTTCAGTTGACCAAACCAACATTGAACTTGGATTGATTACACATATAGCCTCAAATTAGCATAATTATTTTGTCTCTTTCTTTTGTAGGAAATCATGGCAATAGTACTAGAACTGTTGTAACTGTTGTGGTGTCTATCGTTTCAACCATCATTCTCATTGTTGGCATTTGCTTTGAGATTGAGGAAGCGAAAGCACAAAAGACCATTACAAAAATTAGAAAGTGAGTGGTTTATGTTTCCTCTGTTTTGTGTTTTAAATGGCAGTTTTGCTTTGATTGTTTAGTTTTCCAAAGAATTAGCTTTAATCCCACAAATGAATTTGATGTTCATGTCTTAATCTACTCTTAGATGTTGCTCTTGGAGATGCCACCAATGAAATTAGCAGTGTGGAGACAATTCAATTAGCTTTTGACACAATTAAAGATGCACAAGCATAAAAGAACGTTTGATTATGCTTCAGCATATTGCACCTTAATTTTTTTTCATTTGATTAAAAAAGTGTCCTTCTAGCTTCGAGTAATATTGTAGTTGATTAATGCTATGTTGATGTCTTGCTCAAGCTAATTGATGAATATGCTTTCATTTCTCTGTTGCAGTGCTTTTGACAAATCACTTAGAGCAGGATTGTTGAAGGTAAAATGTCAGATACAGCTAGACCTTATCTTTGATTTTGAACATTTTTTTCTAATTTTTTAGAACTTGATGTTAGAGTCGATTCCTTGTTATTTATTGTTAGATCTTGATGTTATTTTGGTTGTTTGCACGAGTATGGAGTTGTTGAATTGTTGTTAAAATATGTTTTACCTTATTAGTTTAGAACTATTTGCAGATTGCCAAGTCCTAAATGAATGAAAAAATGGATGTTATTGTATGTTGAATTCAAACCATCAATTCACAGCGTGCATTGCAATTGGGAAGTCAATAAGAGACTATATGTCAAATCTTTTTAGTTATTTTCTTGTGTTTTTGCTCTTTCATTCATGGCTATTGGAATGTGCATTGTGTCTGTACCATCATATATCTTTTTAGTTATCTTTCTATCACAAAATGTGATGCTTTCGAAATTGTTTTGGTATTTGAAGTGGCCATTGATATTTGACAAAAAAAAGTGTTTAAAGAATTTCTATGGTTAACATGGTGGATCATGACTATAAATTTGTGAGAAATTTGTGAGAAATAGAGTAATACAGGCTCTCATAACTAGCTTTGAATTTGCATGGATGAACATATGGCTACACTTAGTTATATCCTTATATGTTGCTTTGAAATTACAGGATCCTTTTTGTGTTTGTGTTAAAACATTTTAAAATTTGTTCCATGGAATCATTACCCCAAACTGAATTTTCTAGTTTTTTTTATTTCAATTCAGTATGAAAGTACACATTTCATTTTGTTTTATTTGTTGCCTATTACTTTTTGTTTATTTTTTTTGTTTGTGTTACAACCTTTTAAGATATGCATTAGCTTTGCTTGTAGCCTCTCCTATTTAACTGCACTTTGAGTTGTTCATTAATAATTACAGGTAGTTTTGAGGGGTTCATTTTCTTTTGAAAATTGATTTATATATGTGCTAGTTTTGAATTCTAAATTTTGAATTTGTACTTGCAGTCGGAACTCAAATCATATGCTTCTCTAGTAGTTGATGGTACACTTTACATGAACGAGGAGGAGATTTTGTGCAAGTTTTTGGACCAAAGAAGAATGGACGTGTTCGTGGTTATGGAGTAGGTGTTACTCCTTCTGAGTTGTTTGGTTCATCTTCTAATGTACGTGATCTTGAGCGTCGTCTTAACGAGTGTGAACAACGTCTTCAATGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTCGAATTAGAAAATCGTTTTGAGGATAACTTTCAAACAATGATGACAGAGATGCATAAACAATTTGCTAAGAGTTGATTGAATGTAATAGTTGGATGTTATAGAAATTTTGTAGTTATTTTTTCTGTAAGTTGCTATAAAAACAATTCTTTCTATTCTATATCTTTGTAATTAGTAATTAAGGGTACTATCAGATACCA

mRNA sequence

ATGGGCAGTTTGGGTGGTTGCCAGTCCGGTTCAAGTAGTTATTGGTCTGAACACTCTCCCTTTTTGTCCGTCCTCAGTTGTTCGTCGATCGTGATCACTAGCTCGCAGGTCGCCGTCAACCATTCATCCCTCGGAGCTTGCCTCAATTTCAATTGTTGCACGGTGGAATTTTCTGTGTTTGATTTTGACTGCACTCGATTACGTTCCATTCCAGGGATCATCTACACTCTCTATGCCATTGTCTTCGTCGAGTATGCCCGCAGTGATCTTGCTGAGCCTCAAATTAGCATAATTATTTTGTCTCTTTCTTTTGTAGGAAATCATGGCAATAGTACTAGAACTGTTGTAACTGTTGTGGTGTCTATCGTTTCAACCATCATTCTCATTGTTGGCATTTGCTTTGAGATTGAGGAAGCGAAAGCACAAAAGACCATTACAAAAATTAGAAATGCTTTTGACAAATCACTTAGAGCAGGATTGTTGAAGTCGGAACTCAAATCATATGCTTCTCTAGTAGTTGATGGTACACTTTACATGAACGAGGAGGAGATTTTGTGCAAGTTTTTGGACCAAAGAAGAATGGACGTGTTCGTGGTTATGGAGTAG

Coding sequence (CDS)

ATGGGCAGTTTGGGTGGTTGCCAGTCCGGTTCAAGTAGTTATTGGTCTGAACACTCTCCCTTTTTGTCCGTCCTCAGTTGTTCGTCGATCGTGATCACTAGCTCGCAGGTCGCCGTCAACCATTCATCCCTCGGAGCTTGCCTCAATTTCAATTGTTGCACGGTGGAATTTTCTGTGTTTGATTTTGACTGCACTCGATTACGTTCCATTCCAGGGATCATCTACACTCTCTATGCCATTGTCTTCGTCGAGTATGCCCGCAGTGATCTTGCTGAGCCTCAAATTAGCATAATTATTTTGTCTCTTTCTTTTGTAGGAAATCATGGCAATAGTACTAGAACTGTTGTAACTGTTGTGGTGTCTATCGTTTCAACCATCATTCTCATTGTTGGCATTTGCTTTGAGATTGAGGAAGCGAAAGCACAAAAGACCATTACAAAAATTAGAAATGCTTTTGACAAATCACTTAGAGCAGGATTGTTGAAGTCGGAACTCAAATCATATGCTTCTCTAGTAGTTGATGGTACACTTTACATGAACGAGGAGGAGATTTTGTGCAAGTTTTTGGACCAAAGAAGAATGGACGTGTTCGTGGTTATGGAGTAG

Protein sequence

MGSLGGCQSGSSSYWSEHSPFLSVLSCSSIVITSSQVAVNHSSLGACLNFNCCTVEFSVFDFDCTRLRSIPGIIYTLYAIVFVEYARSDLAEPQISIIILSLSFVGNHGNSTRTVVTVVVSIVSTIILIVGICFEIEEAKAQKTITKIRNAFDKSLRAGLLKSELKSYASLVVDGTLYMNEEEILCKFLDQRRMDVFVVME
Homology
[Close]
BLAST of Spg027363 vs. TAIR 10
Match: AT4G28088.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 0 

Query: 37 VAVNHSSLGACLNFNCCTVEFSVFDFDCTRLRSIPGIIYTLYAIVFVE 85
          +A+    LG CL   CCT EF +     T L  +PGIIY LYAIV+V+
Sbjct: 13 IAILIPPLGVCLRHGCCTTEFMIC-LILTLLGYVPGIIYALYAIVYVD 59

[Close]
BLAST of Spg027363 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 42.0 bits (97), Expect = 6.7e-04
Identity = 24/46 (52.17%), Postives = 27/46 (58.70%), Query Frame = 0 

Query: 37 VAVNHSSLGACLNFNCCTVEFSVFDFDCTRLRSIPGIIYTLYAIVF 83
          +A+    LG CL   CCTVEF +     T L  IPGIIY LY IVF
Sbjct: 13 IAILLPPLGVCLKRGCCTVEFLIC-LVLTILGYIPGIIYALYVIVF 57

The following BLAST results are available for this feature:
BLAST of Spg027363 vs.
Match NameE-valueIdentityDescription
BLAST of Spg027363 vs.
Match NameE-valueIdentityDescription
BLAST of Spg027363 vs.
Match NameE-valueIdentityDescription
BLAST of Spg027363 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G28088.11.4e-0447.92Low temperature and salt responsive protein family [more]
AT4G30650.16.7e-0452.17Low temperature and salt responsive protein family [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027363.1Spg027363.1mRNA