Spg027315 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg027315
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein TIC 214
Location	scaffold7: 42569550 .. 42571370 (-)
RNA-Seq Expression	Spg027315
Synteny	Spg027315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCATGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATACCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGTAGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTAATTCTTATTACTTTTCAATATTCAATATGGAAAAAAATTCAAAATGAAAAGGTCGTCTTATTCAAAACCCCTTCTCTCCCACTTTTCTCTCTCACTTCACACCTTGGAACGCACCATTCTTATAGAGAGAGAGGCGCTTTCACATCTTCTTAACCCGAAATGGCAAATGGCTGGGGAGAGGAAAGGTTCCTTTTTTTAGGGTACCCCCGGGAACAGATCCAGTGGAGACGGGGTGGGGACTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCTTATCTTTTGATTTTTTCTTTTTCATTACTGGGTTATGGGCGGGGGTACCGTTATCAATTAAATATAGTATACCCAACCCGAATCAGCATATTTTTTTGTTTTACGCCCCGTAATTCTTCCTCAGCCAGGCTTGGGCAGAATAGCAGAGCAAGTAAAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATATGTTTGCTCGCGGTAATTTTGACCTCTCGGGAGAATCGATGACTGCATCAAAGATGCACTTGCTAATACTAGTACATCTGAAAATTATTAATTAGCTAGTTGTAAATAGACCCAGACTATGGAACAAAGGATTATCCCGGACCTACACCGAGGTATTGACGGTGATTCTCAAATATCGCAGAACAGAATTTGATACGATGAGATAAAATGCAATAGAAACAAAGACACAGGGAACGGGTTACCTACTCTTAACAGTGAAAGCGAACCCTTTCATTCCAAATTAAAGAATTCGGAATGAATCAAATCTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCACTCTACCACTGAGCTACTGAGGAACAATGGTAAATTAGGTCTCATAGAATTCTATTCCCATTCTCAACCCATAACCATTATGAGCTCGAGGTTTCCTTCGTAACTCCCGGAACTTCTTCGTAGTGGCTCCGTTCCATATCATAGAGAACCTCAAAGTGGCTCTATTTCATTATATTACATCCATATCCCAATTCCATTCATTTAATATCTCTGTGGTGTCATTGAGATAAGAGATGTCGTTTCTAGTCTATCTGTTTCTATTTCTATATATATGGAAAGTTAAAAAATCATCATATAATAATCCAAAAATTGTAATAGAAAAGAAAAAGGGAGGTTTGTGATGATTTAAAAATCTTTTATACTAGGTAATCTTGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGTCCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATGAGCAACAACAGGTTTTATTATAGGACAGCTCATGATGTTCATATCGATCTATTATGTGCCTCTGCATCTAGCATTGGGTAG

mRNA sequence

ATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCATGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATACCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCTTATCTTTTGATTTTTTCTTTTTCATTACTGGGTTATGGGCGGGGGTACCGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATGAGCAACAACAGGTTTTATTATAGGACAGCTCATGATGTTCATATCGATCTATTATGTGCCTCTGCATCTAGCATTGGGTAG

Coding sequence (CDS)

ATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCATGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATACCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCTTATCTTTTGATTTTTTCTTTTTCATTACTGGGTTATGGGCGGGGGTACCGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATGAGCAACAACAGGTTTTATTATAGGACAGCTCATGATGTTCATATCGATCTATTATGTGCCTCTGCATCTAGCATTGGGTAG

Protein sequence

MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGESTWLRTTVSGVRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLSFDFFFFITGLWAGVPALLSLPSPSSGYGRRNREESMSNNRFYYRTAHDVHIDLLCASASSIG

Homology

[Close]

BLAST of Spg027315 vs. NCBI nr
Match: CAA7014164.1 (unnamed protein product [Microthlaspi erraticum] >CAA7015545.1 unnamed protein product [Microthlaspi erraticum] >CAA7021836.1 unnamed protein product [Microthlaspi erraticum] >CAA7022817.1 unnamed protein product [Microthlaspi erraticum] >CAA7035220.1 unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 158.3 bits (399), Expect = 6.3e-35
Identity = 90/140 (64.29%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 1   MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
           MEG+RPLVS PV NW LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGD
Sbjct: 1   MEGRRPLVSTPVKNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGD 60

Query: 61  DTVGESTWLRTTV-SGVRI----------PPR----------PQPAKKGRTFPSGGRKIM 118
           DTVGE T   T+   GV +           PR           +P ++G  FP GGRKIM
Sbjct: 61  DTVGEGTPGNTSSGDGVGLVAQRIRARGYEPRCRGFESLLAHNRPKREG-PFPPGGRKIM 120

[Close]

BLAST of Spg027315 vs. NCBI nr
Match: CAA7012819.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 154.8 bits (390), Expect = 7.0e-34
Identity = 89/140 (63.57%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 1   MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
           MEG+R LVS PV NW LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGD
Sbjct: 1   MEGRRHLVSTPVKNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGD 60

Query: 61  DTVGESTWLRTTV-SGVRI----------PPR----------PQPAKKGRTFPSGGRKIM 118
           DTVGE T   T+   GV +           PR           +P ++G  FP GGRKIM
Sbjct: 61  DTVGEGTPGNTSSGDGVGLVAQRIRARGYEPRCRGFESLLAHNRPKREG-PFPPGGRKIM 120

[Close]

BLAST of Spg027315 vs. NCBI nr
Match: PHU10897.1 (hypothetical protein BC332_17827 [Capsicum chinense])

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-29
Identity = 90/166 (54.22%), Postives = 98/166 (59.04%), Query Frame = 0


Query: 1   MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
           MEGQRPLVSPPV NWGLTITSQYAFLSCLSSFMVRYS VLGVEEPHQSIPNLVVKLYCGD
Sbjct: 16  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSSVLGVEEPHQSIPNLVVKLYCGD 75

Query: 61  DTVGESTWLRTTVSGVRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSK--- 120
           DT    T    T +G+              F S   K      +P    L     +    
Sbjct: 76  DTNAIET---KTGNGLPTVNGQSEPLYSEFFNSESIKSPQVGFEPTTNRLTADRSTTELL 135

Query: 121 WNGLSFDFFFF------ITGLWAGVP-ALLSLPSPSSGYGRRNREE 157
            N   FD   F      +T + + +P ALLSLPS S GYGR NREE
Sbjct: 136 RNNRRFDLIEFNSCSQPMTNMSSKLPSALLSLPSASFGYGRSNREE 178

[Close]

BLAST of Spg027315 vs. NCBI nr
Match: TYK00176.1 (hypothetical protein E5676_scaffold1452G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-27
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
          MEGQR LVSPPV NWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYC D
Sbjct: 17 MEGQRHLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCSD 76

Query: 61 DTVGESTWLRTTVSG 76
          DTVGE     ++ SG
Sbjct: 77 DTVGEVLRKNSSTSG 91

[Close]

BLAST of Spg027315 vs. NCBI nr
Match: PQP98134.1 (hypothetical protein Pyn_20557 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
          MEG+RPLVSPPV N+GLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD
Sbjct: 1  MEGRRPLVSPPVKNFGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60

Query: 61 DTVGE 66
          DTVGE
Sbjct: 61 DTVGE 65

[Close]

BLAST of Spg027315 vs. ExPASy TrEMBL
Match: A0A6D2K9K4 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10052 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.1e-35
Identity = 90/140 (64.29%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 1   MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
           MEG+RPLVS PV NW LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGD
Sbjct: 1   MEGRRPLVSTPVKNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGD 60

Query: 61  DTVGESTWLRTTV-SGVRI----------PPR----------PQPAKKGRTFPSGGRKIM 118
           DTVGE T   T+   GV +           PR           +P ++G  FP GGRKIM
Sbjct: 61  DTVGEGTPGNTSSGDGVGLVAQRIRARGYEPRCRGFESLLAHNRPKREG-PFPPGGRKIM 120

[Close]

BLAST of Spg027315 vs. ExPASy TrEMBL
Match: A0A6D2HAQ3 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS53 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.4e-34
Identity = 89/140 (63.57%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 1   MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
           MEG+R LVS PV NW LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGD
Sbjct: 1   MEGRRHLVSTPVKNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGD 60

Query: 61  DTVGESTWLRTTV-SGVRI----------PPR----------PQPAKKGRTFPSGGRKIM 118
           DTVGE T   T+   GV +           PR           +P ++G  FP GGRKIM
Sbjct: 61  DTVGEGTPGNTSSGDGVGLVAQRIRARGYEPRCRGFESLLAHNRPKREG-PFPPGGRKIM 120

[Close]

BLAST of Spg027315 vs. ExPASy TrEMBL
Match: A0A2G3BWN2 (Protein TIC 214 OS=Capsicum chinense OX=80379 GN=BC332_17827 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 8.7e-30
Identity = 90/166 (54.22%), Postives = 98/166 (59.04%), Query Frame = 0


Query: 1   MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
           MEGQRPLVSPPV NWGLTITSQYAFLSCLSSFMVRYS VLGVEEPHQSIPNLVVKLYCGD
Sbjct: 16  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSSVLGVEEPHQSIPNLVVKLYCGD 75

Query: 61  DTVGESTWLRTTVSGVRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSK--- 120
           DT    T    T +G+              F S   K      +P    L     +    
Sbjct: 76  DTNAIET---KTGNGLPTVNGQSEPLYSEFFNSESIKSPQVGFEPTTNRLTADRSTTELL 135

Query: 121 WNGLSFDFFFF------ITGLWAGVP-ALLSLPSPSSGYGRRNREE 157
            N   FD   F      +T + + +P ALLSLPS S GYGR NREE
Sbjct: 136 RNNRRFDLIEFNSCSQPMTNMSSKLPSALLSLPSASFGYGRSNREE 178

[Close]

BLAST of Spg027315 vs. ExPASy TrEMBL
Match: A0A5D3BPI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1452G00010 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.1e-28
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
          MEGQR LVSPPV NWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYC D
Sbjct: 17 MEGQRHLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCSD 76

Query: 61 DTVGESTWLRTTVSG 76
          DTVGE     ++ SG
Sbjct: 77 DTVGEVLRKNSSTSG 91

[Close]

BLAST of Spg027315 vs. ExPASy TrEMBL
Match: A0A6N2NAY5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480550 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1   MEGQRPLVSPPVMNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
           MEGQRPLVSP V NWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCG+
Sbjct: 489 MEGQRPLVSPTVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGE 548

Query: 61  DTVGE 66
           DTVGE
Sbjct: 549 DTVGE 553

The following BLAST results are available for this feature:

BLAST of Spg027315 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA7014164.1	6.3e-35	64.29	unnamed protein product [Microthlaspi erraticum] >CAA7015545.1 unnamed protein p...	[more]
CAA7012819.1	7.0e-34	63.57	unnamed protein product [Microthlaspi erraticum]	[more]
PHU10897.1	1.8e-29	54.22	hypothetical protein BC332_17827 [Capsicum chinense]	[more]
TYK00176.1	1.7e-27	85.33	hypothetical protein E5676_scaffold1452G00010 [Cucumis melo var. makuwa]	[more]
PQP98134.1	3.7e-27	95.38	hypothetical protein Pyn_20557 [Prunus yedoensis var. nudiflora]	[more]

BLAST of Spg027315 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg027315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6D2K9K4	3.1e-35	64.29	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10052 ...	[more]
A0A6D2HAQ3	3.4e-34	63.57	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS53 PE=...	[more]
A0A2G3BWN2	8.7e-30	54.22	Protein TIC 214 OS=Capsicum chinense OX=80379 GN=BC332_17827 PE=3 SV=1	[more]
A0A5D3BPI7	8.1e-28	85.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6N2NAY5	1.1e-27	95.38	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480550 PE=4 SV=...	[more]

BLAST of Spg027315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..28 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg027315.1	Spg027315.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane