Spg027283 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027283
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Locationscaffold8: 4599078 .. 4599908 (-)
RNA-Seq ExpressionSpg027283
SyntenySpg027283
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGATGGAAGAGGGTGAACATCGAGTGGAAGGTGTTTCACCTTCGCAAGATTGGAGATGGGAGGAAAGTGGTTATGGAGGAGAAACATGGGTCAAGAACGAGTCGTCTGGATGTGGACGTGGGTACCTTCGCTTGGATTAGGGACTGTCTTATGGTTGTGTCGAAATCAGAGAACCCAAACGGATTCTGGAGAAGAAGGAAACTAGAGGCAGCGATGATCTTCTTCTAGGTGCTATCTAACAAGAGAGGAAGATTTGGGCTCCTCTCTTTGGAATCAAACAAGGGGAAGAAATCTTCAATCTTCATTCCTGAGGGTCAGAATCGTAGAGGCTGGGGATTGTTGGAGACGGCCATGACTGAAATGCTCCCCCCTCCCAAAGAGTCGAACCGGTTCGATAATGGGTTTCTTAAAAAGAAAGAGAGTTTCGGAGTCCAGATCGACGAAGGGAATAAAAAATCCACCTCCTTTGCGGAAATAGTGAGAAAGGGATCTACGGCAGACATCGAGAGGGATATTTTACCTTCAGAAGTTGGGGAGCTTGCCTTTGACTGTTCTTCGGCGGTCATCATCGAAAGGATTACCGTCGATGTGCAATGGATGGGTATAAGAGAGTCATGCTCAGCAATGGCGAATTTAGGTATCATCCTTAAACCCGTTTGTATTAATCTTGCAGTGGGCCTTTGCGGGAGCAAGAATGAAGCTAAGGAGTTGATCGAGGCGTGTAAGGGGCAGCAACCAGAACACTTCAGCATTCACCCGTGGGATTGCAATATGCTCGTTGAGAGGAAGAGGCTAGCCTTCAAGGGGGTTGGATTACAGCCCTAG

mRNA sequence

ATGGATCGATGGAAGAGGGTGAACATCGAGTGGAAGGTGTTTCACCTTCGCAAGATTGGAGATGGGAGGAAAGTGGTTATGGAGGAGAAACATGGGTCAAGAACGAGTCGTCTGGATGTGGACGTGGGTACCTTCGCTTGGATTAGGGACTGTCTTATGGTGCTATCTAACAAGAGAGGAAGATTTGGGCTCCTCTCTTTGGAATCAAACAAGGGGAAGAAATCTTCAATCTTCATTCCTGAGGGTCAGAATCGTAGAGGCTGGGGATTGTTGGAGACGGCCATGACTGAAATGCTCCCCCCTCCCAAAGAGTCGAACCGGTTCGATAATGGGTTTCTTAAAAAGAAAGAGAGTTTCGGAGTCCAGATCGACGAAGGGAATAAAAAATCCACCTCCTTTGCGGAAATAGTGAGAAAGGGATCTACGGCAGACATCGAGAGGGATATTTTACCTTCAGAAGTTGGGGAGCTTGCCTTTGACTGTTCTTCGGCGGTCATCATCGAAAGGATTACCGTCGATGTGCAATGGATGGGTATAAGAGAGTCATGCTCAGCAATGGCGAATTTAGGTATCATCCTTAAACCCGTTTGTATTAATCTTGCAGTGGGCCTTTGCGGGAGCAAGAATGAAGCTAAGGAGTTGATCGAGGCGTGTAAGGGGCAGCAACCAGAACACTTCAGCATTCACCCGTGGGATTGCAATATGCTCGTTGAGAGGAAGAGGCTAGCCTTCAAGGGGGTTGGATTACAGCCCTAG

Coding sequence (CDS)

ATGGATCGATGGAAGAGGGTGAACATCGAGTGGAAGGTGTTTCACCTTCGCAAGATTGGAGATGGGAGGAAAGTGGTTATGGAGGAGAAACATGGGTCAAGAACGAGTCGTCTGGATGTGGACGTGGGTACCTTCGCTTGGATTAGGGACTGTCTTATGGTGCTATCTAACAAGAGAGGAAGATTTGGGCTCCTCTCTTTGGAATCAAACAAGGGGAAGAAATCTTCAATCTTCATTCCTGAGGGTCAGAATCGTAGAGGCTGGGGATTGTTGGAGACGGCCATGACTGAAATGCTCCCCCCTCCCAAAGAGTCGAACCGGTTCGATAATGGGTTTCTTAAAAAGAAAGAGAGTTTCGGAGTCCAGATCGACGAAGGGAATAAAAAATCCACCTCCTTTGCGGAAATAGTGAGAAAGGGATCTACGGCAGACATCGAGAGGGATATTTTACCTTCAGAAGTTGGGGAGCTTGCCTTTGACTGTTCTTCGGCGGTCATCATCGAAAGGATTACCGTCGATGTGCAATGGATGGGTATAAGAGAGTCATGCTCAGCAATGGCGAATTTAGGTATCATCCTTAAACCCGTTTGTATTAATCTTGCAGTGGGCCTTTGCGGGAGCAAGAATGAAGCTAAGGAGTTGATCGAGGCGTGTAAGGGGCAGCAACCAGAACACTTCAGCATTCACCCGTGGGATTGCAATATGCTCGTTGAGAGGAAGAGGCTAGCCTTCAAGGGGGTTGGATTACAGCCCTAG

Protein sequence

MDRWKRVNIEWKVFHLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLMVLSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLPPPKESNRFDNGFLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQWMGIRESCSAMANLGIILKPVCINLAVGLCGSKNEAKELIEACKGQQPEHFSIHPWDCNMLVERKRLAFKGVGLQP
Homology
BLAST of Spg027283 vs. NCBI nr
Match: TYK14183.1 (hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 7.4e-18
Identity = 69/231 (29.87%), Postives = 112/231 (48.48%), Query Frame = 0

Query: 6   RVNIEWKVFHLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLM------------ 65
           ++ I+ K F +  +   RK+ +EE++G    +L++D GT AW+RDCL+            
Sbjct: 3   KLKIDRKEFLVGFMVKARKIYIEERNGRIFGKLELDFGTSAWVRDCLVGAAGANNSMVFW 62

Query: 66  ------------VLSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLPP 125
                       VL N++GRF +LSLES K +K+ IFIPEG    GW  L   ++ +LP 
Sbjct: 63  QRRLEFAIIFFQVLENEKGRFAILSLESFKERKTRIFIPEGSRGSGWRSLAGEISALLP- 122

Query: 126 PKESNRFDNGFLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDC 185
                   +G + +K     Q  +  +      ++VR+  T +  +D+      E AF+ 
Sbjct: 123 -------WSGTINQKTGSMSQPAKNREAFKGLGKMVRR-RTDESGKDV------EFAFEW 182

Query: 186 SSAVIIERITVDVQWMGIRESCSAMANLGIILKPVCINLAVGLCGSKNEAK 213
            S VII+++     W  +++       +    K  C NLAVG+ GS +EAK
Sbjct: 183 KSTVIIKKLRASSDWGALKQLLEQPPVICCNFKNFCANLAVGIGGSDSEAK 218

BLAST of Spg027283 vs. NCBI nr
Match: KAA0054521.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-04
Identity = 48/164 (29.27%), Postives = 78/164 (47.56%), Query Frame = 0

Query: 15  HLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLMV---LSNKRGRFGLLSLESNK 74
           H R    GRK+ +EE++G R+ +L++++GT AW+RDCL+    LSN       L     +
Sbjct: 131 HGRSSECGRKICIEERNGERSRKLELELGTSAWVRDCLVAAAELSNP------LVFWRRR 190

Query: 75  GKKSSIFIPEGQNRRGWGLLETAMTEMLPPPKESNRFDNGFLKKKESFGVQIDEGNKKST 134
             ++ + IP+G+N  G G    A    L    E      G LK     G ++D   K   
Sbjct: 191 WLETRVLIPDGKN--GSGRRPLAAEASL----EGRAGSEGSLKS----GKELDAVVKADC 250

Query: 135 SFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQ 176
           S  ++  +GS  D + +       +L  DC + VII+  +  V+
Sbjct: 251 S--KVESEGSPEDKKWEF------DLRSDCEATVIIKMTSAAVE 270

BLAST of Spg027283 vs. ExPASy TrEMBL
Match: A0A5D3CQQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8046G00070 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-18
Identity = 69/231 (29.87%), Postives = 112/231 (48.48%), Query Frame = 0

Query: 6   RVNIEWKVFHLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLM------------ 65
           ++ I+ K F +  +   RK+ +EE++G    +L++D GT AW+RDCL+            
Sbjct: 3   KLKIDRKEFLVGFMVKARKIYIEERNGRIFGKLELDFGTSAWVRDCLVGAAGANNSMVFW 62

Query: 66  ------------VLSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLPP 125
                       VL N++GRF +LSLES K +K+ IFIPEG    GW  L   ++ +LP 
Sbjct: 63  QRRLEFAIIFFQVLENEKGRFAILSLESFKERKTRIFIPEGSRGSGWRSLAGEISALLP- 122

Query: 126 PKESNRFDNGFLKKKESFGVQIDEGNKKSTSFAEIVRKGSTADIERDILPSEVGELAFDC 185
                   +G + +K     Q  +  +      ++VR+  T +  +D+      E AF+ 
Sbjct: 123 -------WSGTINQKTGSMSQPAKNREAFKGLGKMVRR-RTDESGKDV------EFAFEW 182

Query: 186 SSAVIIERITVDVQWMGIRESCSAMANLGIILKPVCINLAVGLCGSKNEAK 213
            S VII+++     W  +++       +    K  C NLAVG+ GS +EAK
Sbjct: 183 KSTVIIKKLRASSDWGALKQLLEQPPVICCNFKNFCANLAVGIGGSDSEAK 218

BLAST of Spg027283 vs. ExPASy TrEMBL
Match: A0A0A0LY03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G673520 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.2e-07
Identity = 33/105 (31.43%), Postives = 50/105 (47.62%), Query Frame = 0

Query: 19  IGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCL-------------------------M 78
           +G  RK+ +EE++G +  +LD+D+GT  W+ D L                          
Sbjct: 2   VGSNRKIYIEERNGRKCGKLDLDLGTLTWVEDRLNAAADASFSMGSWQRKKLDFGIIFFQ 61

Query: 79  VLSNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEM 99
           VL N   RF ++SL+S KG+K+ +FI EG    GW  L   +  M
Sbjct: 62  VLENIGRRFTIISLDSFKGRKARVFISEGSRESGWRSLAREILNM 106

BLAST of Spg027283 vs. ExPASy TrEMBL
Match: A0A5A7ULV4 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003030 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-04
Identity = 48/164 (29.27%), Postives = 78/164 (47.56%), Query Frame = 0

Query: 15  HLRKIGDGRKVVMEEKHGSRTSRLDVDVGTFAWIRDCLMV---LSNKRGRFGLLSLESNK 74
           H R    GRK+ +EE++G R+ +L++++GT AW+RDCL+    LSN       L     +
Sbjct: 131 HGRSSECGRKICIEERNGERSRKLELELGTSAWVRDCLVAAAELSNP------LVFWRRR 190

Query: 75  GKKSSIFIPEGQNRRGWGLLETAMTEMLPPPKESNRFDNGFLKKKESFGVQIDEGNKKST 134
             ++ + IP+G+N  G G    A    L    E      G LK     G ++D   K   
Sbjct: 191 WLETRVLIPDGKN--GSGRRPLAAEASL----EGRAGSEGSLKS----GKELDAVVKADC 250

Query: 135 SFAEIVRKGSTADIERDILPSEVGELAFDCSSAVIIERITVDVQ 176
           S  ++  +GS  D + +       +L  DC + VII+  +  V+
Sbjct: 251 S--KVESEGSPEDKKWEF------DLRSDCEATVIIKMTSAAVE 270

BLAST of Spg027283 vs. ExPASy TrEMBL
Match: A0A0A0KWZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G626010 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.5e-04
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 56  SNKRGRFGLLSLESNKGKKSSIFIPEGQNRRGWGLLETAMTEMLP 101
           SN RGRF LLSLES KG+K  IFIPEG    GW +L   ++ +LP
Sbjct: 45  SNSRGRFALLSLESFKGRKMRIFIPEGIRGSGWRMLAGEVSGVLP 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK14183.17.4e-1829.87hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa][more]
KAA0054521.16.1e-0429.27transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. ma... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CQQ03.6e-1829.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LY038.2e-0731.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G673520 PE=4 SV=1[more]
A0A5A7ULV42.9e-0429.27Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ... [more]
A0A0A0KWZ98.5e-0457.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G626010 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027283.1Spg027283.1mRNA