Spg027254 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027254
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold8: 9055590 .. 9060502 (-)
RNA-Seq ExpressionSpg027254
SyntenySpg027254
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCTAGTAGGCTTCTCTTTGCATGGAAGATGTCTATATAAGGAGTATGAATCAGATTCAAAGAAGGAGAGCCATTTTCCATATTGTTATGCTGCTGGATTTTGGTCTCAATCTCACTCATCTCCATATATCTCTCTAGTGCTTGAACCTTCAAGCATTCCCTTCCCATTCCCTATCTCTATAGACTCCCACAAGTCGTTCTTGGCCCGGAGAATAGTAGGGAAGACACTAGAGGTGGTCCACACACCGTTCGTGATCAAAGGAATCAAAGGGAGTTGTTGAATCGGTCTCCAAAAGGTTGGTAAAAATTCTGCTCTCTCCTTACGGTATTTGGACAGCATGTTTTCATTTTCTAAAATTGATGTAGTTAAGTGCCTCCGATCCTAAAATTGCTTCCGCATGTGTTATATGAACACCTTCAATTGGTATCAGAGCATGATTAAGGCACCTAACATGCATTAATTTTAGCTTGGTGGGTAGCTTTTCATATGATGAAACTGTGTAAGAACTAAAGAAAATTGGTTTTGGGATTGATTTTAATTTTCAGTCAATTCGTTGGAATTAATTGTAATTGCCTACATGTTTATGGGCTTTAATGTGTTCATATGGAGTCTGTAAAATTTGAGAGTCAATAGAGTCCATTTAGGCCGTCAATTTGAAGAAATTCGGAGACTGCTCGCTGCTGGCCGAAAATTCCAGCATGCTGTTTTTTAGTTCCAGCTCAAGTACGTTCTTCTCGTAACGGTAAAATGGTCCGGTTCAAGCAATCCAAAGGTGGTTCGGGTCGGTTCGAATGGTTCGGAAGCGGTCCAAGCCCTATTTGAAATTATTATTGTAATAATTTTAGTTTTTATTTTTGCTTGATTAAAAATCCCAAAACCAATTCACTTTAGTAAATTTAATTAATTATGCATTATTGAATGTATGTTTTAATTAAATAGTATTTTATGTGCATAATGTATGTCATTTATATTTAAAACCCCACCATAGGAAAGCATGTTCATGCATTTGTTTAATTTGAATAAGTGTTATTTATTAATTCAAATGCATGAGGGAAATTTCATGTTTTATTAATATAAGAGTTGTATTAATTTAGGGAGATTCATGCTTGAATGGTTAATTAAAATTGATTAATTCTTATAATAGTTATAATTATTAAATGATAAAATTAACCAAGCATGAACATGAAATTTCATTAGTTTGATTATGATTGTTATACTCAAATTAGGCTTGTTATGGATTTGTTTTATAATTGTTATAAAAGAGATAGAAATCTAAAATCTATAACAAGATAAAGAGCATGTAAACCCGAGACTTTTCTTGGGTCAATTCCTCTTGTCATCTATTGTGAAAGTTGGACTTAAGTTGTGTGGTTTCATTGTTGAAGGAAAATGGCAAGCATTTAGTTCAAGTTGTTTTTTTTTAACCTTGGAGTTTATTTAGAGAAAAGGAAAATGAAAGGAAAGGAAAAGAAGAAAAGAAAAGAAATGGGAAAGGAAAGAAAGCCTAAAAAAAAAAAAAGAAAAGAAAGGAAAGTGGGAAAAGACAGCAGGAACCCACCACCGCCTAAGCCAACTCTTGCCCATTTTTAGCCCACTACCAGCCCATTTCTCATCATTTTTCATTCCAAAAGTTACAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTCTAGCAAATTGAATGAAGGGAGCTTGACCTAAATCGTATGAGAAGTTGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTCCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTATCTACAACTTTCATGAAAAATTAGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAGGTTATGGGTATTGGAAGCTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATTGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGATTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGGTTATATGTTTTACATGCTTTCCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAATAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTCCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTTCGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTTTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAATGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGATTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTGAAGGTTTATCACGTGTTTGACTTCCGGATTTAGAGTTTTTAAGTTAGTCACTCACTGGGCTTCGTAGCTCATCCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCAAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTATATGTTTTGTAAGGGTTGTATAATATCATCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGAGCATGCTCACTTAGGTTAATGAACCTTCAACAATTCGATCAACTTGCATAGTTTAGGTCGATATCTTGTAAAACAACGGTTACGAGAGAACTCACCCGACAAAATGCTGTCTAAGGCTGGAGGTATTTAAGTTGACGGTTTACGGAACAGCTCCTACCTGGGCATTGAGTCGGTTCTTGAGTTAAGTTAACTCGAGTTTTATGAGCATGCGTGAGCGGTGTGAGGTTTTAAAGTGTTATCACCTAGACATCGTAGTATAAAGAGTTATACAAACCTAGACATAGGTTGTTTCTAAAGGGTGCTTTTCTTATAACTTGAATGATTGATTGTTATATGCTTTAAAACACCATTAGAAAGCATGTTATAGGGTTTATTCATTAAAAGTTATAAGAGTTATAAAAGTTGATGAATAGAAACCGTAAAATCTATAACAAAGAGTTGCATGCTAACATAGGATCTTAGGATCTTATCATTCTTTAAATGGTTTAAAATGAAATAGACCTAAGATCGCCTTTTTCTAATAGGATTAGAAATATGTCTTACTTAGTGTTTTAAAATAGTTTTGAAATTCGAGTAAGTAGGACATAAGACCTTGGTTATAAGGGAACTCTCCCGGCAAATGGTTCGGAACCTGAGTTGAATTAACCATAGTCTTACTAGCATGCAATGTCACTAGGTTATTAAAAGTGTTTAATCACCTAGACATTTAGTGTAAAGACCTTGTTTAATAAGGCATAGACTTAGATAGATTCATTTAGCCGGAATTTACCTAAGTAATAAGACCCTAAAACTTTACAACACTTTAGTGGGAGGAAAAGTATAGAAACGAAATATTCATATTAAGTTTCTACTCTCACGTCCCCCTGAGTTCACACCGTGAGATCCATGCTTGGCCTCGAGGCGCCCTGGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAATATCAAGGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAAAAGGAAACGTGTCAAACGTATCCTGCGGTCTCCATCATTAGGTTGCACCGTGAGATTCCTATGCGCTGCCTGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGATTCGGAACAATGCAAACTCCAGAAATGGATAGGGTTTCCTAGGGCCATTCCCAACATTAGCTCTTCCTTACGGTGGCATTGTTGGGGCCGTCCTCTGCGATCTGAAAATGATGGATAA

mRNA sequence

ATGTGTCTAGTAGGCTTCTCTTTGCATGGAAGATGTCTATATAAGGAGTATGAATCAGATTCAAAGAAGGAGAGCCATTTTCCATATTGTTATGCTGCTGGATTTTGGTCTCAATCTCACTCATCTCCATATATCTCTCTAGTGCTTGAACCTTCAAGCATTCCCTTCCCATTCCCTATCTCTATAGACTCCCACAAGTCGTTCTTGGCCCGGAGAATAGTAGGGAAGACACTAGAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGAGCACAGGATTTCCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCAAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATCCATGCTTGGCCTCGAGGCGCCCTGGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAATATCAAGGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAAAAGGAAACGTGTCAAACGTATCCTGCGGTCTCCATCATTAGGTTGCACCGTGAGATTCCTATGCGCTGCCTGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGATTCGGAACAATGCAAACTCCAGAAATGGATAGGGTTTCCTAGGGCCATTCCCAACATTAGCTCTTCCTTACGGTGGCATTGTTGGGGCCGTCCTCTGCGATCTGAAAATGATGGATAA

Coding sequence (CDS)

ATGTGTCTAGTAGGCTTCTCTTTGCATGGAAGATGTCTATATAAGGAGTATGAATCAGATTCAAAGAAGGAGAGCCATTTTCCATATTGTTATGCTGCTGGATTTTGGTCTCAATCTCACTCATCTCCATATATCTCTCTAGTGCTTGAACCTTCAAGCATTCCCTTCCCATTCCCTATCTCTATAGACTCCCACAAGTCGTTCTTGGCCCGGAGAATAGTAGGGAAGACACTAGAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGAGCACAGGATTTCCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCAAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATCCATGCTTGGCCTCGAGGCGCCCTGGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAATATCAAGGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAAAAGGAAACGTGTCAAACGTATCCTGCGGTCTCCATCATTAGGTTGCACCGTGAGATTCCTATGCGCTGCCTGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGATTCGGAACAATGCAAACTCCAGAAATGGATAGGGTTTCCTAGGGCCATTCCCAACATTAGCTCTTCCTTACGGTGGCATTGTTGGGGCCGTCCTCTGCGATCTGAAAATGATGGATAA

Protein sequence

MCLVGFSLHGRCLYKEYESDSKKESHFPYCYAAGFWSQSHSSPYISLVLEPSSIPFPFPISIDSHKSFLARRIVGKTLEGKAHAKPAIAGSEINLSTSGFLFGLSYTEGIKRAQDFRAKQEDLWPRGNRSSLQTGELDKTVEIKLPVPDTLPTSAESSRSSSSTWFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDPCLASRRPGSVPLRMVFAWVNIKVNGESVHSKWEKETCQTYPAVSIIRLHREIPMRCLRVALGAITLRRACAWDSEQCKLQKWIGFPRAIPNISSSLRWHCWGRPLRSENDG
Homology
[Close]
BLAST of Spg027254 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-24
Identity = 82/162 (50.62%), Postives = 94/162 (58.02%), Query Frame = 0 

Query: 81  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK-RAQDFRAKQE---------DLWPRGNRS 140
           K +AKPAIA S  N      LFGLSY E ++  +  F +K            + PRGNR 
Sbjct: 25  KVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGNRP 84

Query: 141 SLQTGELDKTVEIKLPVPDTLPTSAESSRSSSSTWF-----SVSV--------------- 200
           +L TG+LDKTVEI+LPVPDTLPTSAESS+S+SSTW      SV V               
Sbjct: 85  NLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSDVRVASY 144

Query: 201 ----GSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR 207
               GS GIVRGDD+CWLHAVF AK AG PGG   P   SRR
Sbjct: 145 VCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGVMPPRTSRR 186

[Close]
BLAST of Spg027254 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-22
Identity = 78/152 (51.32%), Postives = 83/152 (54.61%), Query Frame = 0 

Query: 101 LFGLSYTEGIKRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEI 160
           LFGL Y EG KR            PRGNR+SLQTGELDKT                 VEI
Sbjct: 19  LFGLGYPEGTKR------------PRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEI 78

Query: 161 KLPVPDTLPTSAESSRSSSSTW---------------------------FSVSVGSTGIV 207
           +LPVPDTLPTSAESS S+SSTW                           F+VSVGST IV
Sbjct: 79  ELPVPDTLPTSAESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIV 138

[Close]
BLAST of Spg027254 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-21
Identity = 69/117 (58.97%), Postives = 75/117 (64.10%), Query Frame = 0 

Query: 117 RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSR 176
           RA+    WPRGNR SLQTGELDKT                 VEI+LP+PDTLPTSAESS 
Sbjct: 115 RAEPSGTWPRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSE 174

Query: 177 SSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR 207
           S+SST     + SV V   GS GI+RGDDVCWLHAVFRAK  GGPGG   P   SRR
Sbjct: 175 SNSSTLLELYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGGGVMPPRTSRR 231

[Close]
BLAST of Spg027254 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-21
Identity = 69/117 (58.97%), Postives = 75/117 (64.10%), Query Frame = 0 

Query: 117 RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSR 176
           RA+    WPRGNR SLQTGELDKT                 VEI+LP+PDTLPTSAESS 
Sbjct: 115 RAEPSGTWPRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSE 174

Query: 177 SSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR 207
           S+SST     + SV V   GS GI+RGDDVCWLHAVFRAK  GGPGG   P   SRR
Sbjct: 175 SNSSTLLELYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGGGVMPPRTSRR 231

[Close]
BLAST of Spg027254 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 6.8e-21
Identity = 77/161 (47.83%), Postives = 82/161 (50.93%), Query Frame = 0 

Query: 101 LFGLSYTEGIKRAQDFRAKQED---------------------LWPRGNRSSLQTGELDK 160
           LF LSY EG K +  F +K                        L PRGNR SLQTGELDK
Sbjct: 19  LFSLSYPEGTK-STGFSSKPGGFLVLSDALSILEIHKLNQKLYLGPRGNRLSLQTGELDK 78

Query: 161 TV---------------EIKLPVPDTLPTSAESSRSSSSTW------------------- 199
           TV                I+LPVPDTLPTSAESS S+SSTW                   
Sbjct: 79  TVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQ 138

[Close]
BLAST of Spg027254 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-25
Identity = 82/162 (50.62%), Postives = 94/162 (58.02%), Query Frame = 0 

Query: 81  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK-RAQDFRAKQE---------DLWPRGNRS 140
           K +AKPAIA S  N      LFGLSY E ++  +  F +K            + PRGNR 
Sbjct: 25  KVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGNRP 84

Query: 141 SLQTGELDKTVEIKLPVPDTLPTSAESSRSSSSTWF-----SVSV--------------- 200
           +L TG+LDKTVEI+LPVPDTLPTSAESS+S+SSTW      SV V               
Sbjct: 85  NLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSDVRVASY 144

Query: 201 ----GSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR 207
               GS GIVRGDD+CWLHAVF AK AG PGG   P   SRR
Sbjct: 145 VCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGVMPPRTSRR 186

[Close]
BLAST of Spg027254 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.8e-23
Identity = 78/152 (51.32%), Postives = 83/152 (54.61%), Query Frame = 0 

Query: 101 LFGLSYTEGIKRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEI 160
           LFGL Y EG KR            PRGNR+SLQTGELDKT                 VEI
Sbjct: 19  LFGLGYPEGTKR------------PRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEI 78

Query: 161 KLPVPDTLPTSAESSRSSSSTW---------------------------FSVSVGSTGIV 207
           +LPVPDTLPTSAESS S+SSTW                           F+VSVGST IV
Sbjct: 79  ELPVPDTLPTSAESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIV 138

[Close]
BLAST of Spg027254 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 69/117 (58.97%), Postives = 75/117 (64.10%), Query Frame = 0 

Query: 117 RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSR 176
           RA+    WPRGNR SLQTGELDKT                 VEI+LP+PDTLPTSAESS 
Sbjct: 115 RAEPSGTWPRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSE 174

Query: 177 SSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR 207
           S+SST     + SV V   GS GI+RGDDVCWLHAVFRAK  GGPGG   P   SRR
Sbjct: 175 SNSSTLLELYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGGGVMPPRTSRR 231

[Close]
BLAST of Spg027254 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 69/117 (58.97%), Postives = 75/117 (64.10%), Query Frame = 0 

Query: 117 RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIKLPVPDTLPTSAESSR 176
           RA+    WPRGNR SLQTGELDKT                 VEI+LP+PDTLPTSAESS 
Sbjct: 115 RAEPSGTWPRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSE 174

Query: 177 SSSST-----WFSVSV---GSTGIVRGDDVCWLHAVFRAKLAGGPGGD--PCLASRR 207
           S+SST     + SV V   GS GI+RGDDVCWLHAVFRAK  GGPGG   P   SRR
Sbjct: 175 SNSSTLLELYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGGGVMPPRTSRR 231

[Close]
BLAST of Spg027254 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.3e-21
Identity = 77/161 (47.83%), Postives = 82/161 (50.93%), Query Frame = 0 

Query: 101 LFGLSYTEGIKRAQDFRAKQED---------------------LWPRGNRSSLQTGELDK 160
           LF LSY EG K +  F +K                        L PRGNR SLQTGELDK
Sbjct: 19  LFSLSYPEGTK-STGFSSKPGGFLVLSDALSILEIHKLNQKLYLGPRGNRLSLQTGELDK 78

Query: 161 TV---------------EIKLPVPDTLPTSAESSRSSSSTW------------------- 199
           TV                I+LPVPDTLPTSAESS S+SSTW                   
Sbjct: 79  TVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQ 138

The following BLAST results are available for this feature:
BLAST of Spg027254 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052218.11.0e-2450.62uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0051980.11.6e-2251.32DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D... [more]
KAA0042035.13.0e-2158.97DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK17971.13.0e-2158.97DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK11835.16.8e-2147.83uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
BLAST of Spg027254 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027254 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UAH64.9e-2550.62CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7U9X47.8e-2351.32DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7TKT01.5e-2158.97Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5D3D1501.5e-2158.97Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5D3CJX33.3e-2147.83CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of Spg027254 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027254.1Spg027254.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0003824 catalytic activity