Spg027188 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg027188
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box protein GID2-like
Location	scaffold8: 5046502 .. 5049638 (+)
RNA-Seq Expression	Spg027188
Synteny	Spg027188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTGTGTGAGCAAGCAATGGCACAAAACGGCCGAAGACGAGCGCCTTTGGGAGCTGATCTGCACCAGGCACTGGGTGAACATCGACTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGTGGCTTCCGTTGCCTCCACTCGCTCTTCATCTAGCCGCTTACCAAGCCCCAATCGTCGTCGTCCACGTCTTCATCGGCTTCGTCCTCTTCGCCGTCGTAGTCATCGTCGTCTTGGTCTCCGTTTCCGACGATGATTGGGTCGAAACCGCCAACCCGGTGGGGGAAGGATGACGTTCATCTGTCGTTGTCGCTTCTGTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGAAGATGAGTGGTGTGGCGTGGATATTCAGTCCATTTAACCATTTTGCTTAAGTTTGGCAATTTGAAATTTCCCTTTCAATGTGTTTTGGATTTGATTTGGGGTTGTTTTGTTTCTTTTTTTGGTTAATTAGATCTGTATCCGGTTCTTGTGTGTACTTTAAAAGATGACATAAATTTCTAACTTGTGTATCTCTAATTTGTATGATATATATATATATATGAACTATGAAAAAGCAGCAAAAATTAAGTGAAAAATCCATGGGGTTTAATTTGTGTTGAAATTGATGGGGGTGGAAGAGAAGAGAAGAAGATGGCCAATAAATGGAAAAGCTGTGATTTCGCGCCAATAAATTGATCTGGACGGGGAGGAGGGACCACCCTCCTCCCCGATTTTCGGCGGGAAACCGAGGAGGAGGGAGGTCCCTCCTCCCTCCCTCCTTTGTTCTATTAAAAAAAGAAGAAGAAAGTGGGAGAAGAGAGAAGAATAAGAGAAGAGGAGGAGAAAAAGAAAAGAAGAAGAAGAAGAAAAAAAAAAAAAACGGTACCGCCGGCGGCCAGCGACGGTCGCCGGTCGTCGGCCGCCGGAGTTAAGGAAGAAAGATGGTGGTTGAGAGGAAGATGATGATAGATGGGTTGAGAAGAAGAAGAAAGGAGGGGAAAAAGAAGAGGGAAAATGAAAAGTTTAAAAAAAATATATTTTTTAATTATTTTATTATTATTTTATTTTTAAAATTTAAAAAATAAATTTTTAATAAAAAAAATTGGTGCCACGTCAGCAAACCGTTAGTTTCTAACGGAAAAATGGATGGAGGGACCAAAATGCTATTAAATGCAAACCTCAGGGACTAAAATGTTGAGTTTGAAACCTCAGGGACCAAAATGAAACCTAAACCAAACCTCAGGGTCCAAAAGTGTATTTTTTCCTATATTTTTTTATTTTGAAAGTTTGTTATTGATTTACCCGTTGAATTAATCTGTAACAAAGCTAGATTTTCTCCCTTGTTTATAGTGTATTTTATTTTTTTTCCCAATATACTGTGTTTTTTGTTCTCTCATATTTTTTCTCTCTGATTTGAATTTAAATCTTTTGTTTTAAATTTAAGTTCTCAGATTTATATTTTTTTTATTTTTTTATTTTGTTATTGATTTACCCGTTGAATTAATCTGTAACAAAACTAGATTTTCTCCCTGGTTTATAATGCATTTTATTTTTTTCCAATATGCTGTGTTTTTTGTTCTCTCCTATTTTTTCTCTCTGATTTGAATTTAAATCTTTTGTTTTAAATTTAAGTTCCCAGATTTATATTTTTTTATTTTGAAAGTTTGTTATTGATTTACCCGTTGAATTAATTTGTAACAAAGCTAGAAAATCCCTTGTTTATAGTGTATCTTGGTTTAATTTACTTCTGAATTAAGATTTGGGGCAGGGGTATTTCTGTCCATTTTGTTGTCAAAAAAATTTACTAAAATTAGCATTTGGTCATTTCTCAGATTGTAAACACGAATGACCTTTTTTCAAAACAGCTAATTTAAAATAGCTATTTATCTGGTTGACCCTAACTATTTATTAAGACCCAATCATAACATTTGCAGGCTTTGGATCAATGGACCAAAAAGGATGCACTTGTTGAAGAAAGATAAGCCCAATACAACTTATGGAACAAAAATTATAGTGAATGGACTCTTTTAACCGATTAATTTCAAATATGTCTATCATATAATTTTATCAATGGTAAGATTTCATGCATTAAATAGATTTTTATTCTTCTTCAAATGCTCTTATTTAATATGATATTCTAATAATTTTTTATTTTTTATTTTATTTCAGCAGCCGAGTTTTTAATTTTTCTCTACTGCCAATTTCTTCCATTTATGGCAAGTCTCATTAATTTATTATATTATTAATTTATTATTTTTATAAGAAACATGCCTTTTTTGTTTTATTCCTTCCCTATACCATTTTTTATTTTGTTAATATATATGTACACATATATATCATATTATTAAATATACACATGTATTTAAGAGAAATATAAATATTGAAAAAAATCACTATACAACCATAAAAATTCTACTGTTTTAAATAATAATAAAAAAAATCTTTTCTCCGACGCCTATTCCCTCTTAAAGATTTCATCAAATCCATTCAGTGTATTTAGTTATTTACAAATATACACTCCGTATATTTGTTCGTCACCACCATCATGATTTTTCAAAAAAAAATTGTATACAAAATATATCCTTCATATTATTAAATATACTCCTACATTTTAGGAAATATATACATGGTATGAAAAAAAATATACATGAGATGAAGCAAATATACAACTATTAAAAAAAATGGGTTTCTTCAAGAATGGGCTGAAATCAGCCCATATATTTCACTTTTGTCCAAAGACCTTAAAATTTTCATTTCAGTCCAGCCCGTTTTAAACAATTGTAGCCCATTTACCATTTTGACCCTCTGATATTCAAAATAAAAAATAAAAAAAAGAAAGAAAATACAGAAAAGGAAACAAACCGTTCGTATGAAAAAAATCCCAAAAAACACGCTTCCTTCCGAAAACACTGCCCATCGTCTTCTTCCTCCCGAAAACACTGCAGACTCTTCTTCCTTCTGAAAATCGTCTTCTCCATGGAGGCTTGAACTTGGCGCTAATTCCGCACATCGCGCCATTGAGAACGACGTCGTTCCACGGACGCGAGTCGTCGGTCCGATGGAGCGTGATGAGAAGCGCAATCACGCCGCCGAGCGACTCGGCGTAG

mRNA sequence

ATGGCGGCCTGTGTGAGCAAGCAATGGCACAAAACGGCCGAAGACGAGCGCCTTTGGGAGCTGATCTGCACCAGGCACTGGGTGAACATCGACTGCGGCAACCAACAACTCCGATCTGTAACTCTTCTTCCTTCTGAAAATCGTCTTCTCCATGGAGGCTTGAACTTGGCGCTAATTCCGCACATCGCGCCATTGAGAACGACGTCGTTCCACGGACGCGAGTCGTCGGTCCGATGGAGCGTGATGAGAAGCGCAATCACGCCGCCGAGCGACTCGGCGTAG

Coding sequence (CDS)

ATGGCGGCCTGTGTGAGCAAGCAATGGCACAAAACGGCCGAAGACGAGCGCCTTTGGGAGCTGATCTGCACCAGGCACTGGGTGAACATCGACTGCGGCAACCAACAACTCCGATCTGTAACTCTTCTTCCTTCTGAAAATCGTCTTCTCCATGGAGGCTTGAACTTGGCGCTAATTCCGCACATCGCGCCATTGAGAACGACGTCGTTCCACGGACGCGAGTCGTCGGTCCGATGGAGCGTGATGAGAAGCGCAATCACGCCGCCGAGCGACTCGGCGTAG

Protein sequence

MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLHGGLNLALIPHIAPLRTTSFHGRESSVRWSVMRSAITPPSDSA

Homology

[Close]

BLAST of Spg027188 vs. NCBI nr
Match: XP_022941417.1 (F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 98.2 bits (243), Expect = 3.9e-17
Identity = 52/92 (56.52%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLHGGLNLALIP 60
           MAACVSKQWHKTAEDERLWELICTRHW N  CGNQQLRSV L     R LH      L  
Sbjct: 60  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 119

Query: 61  HIAPLRTTSFHGRESSVRWSVMRSAI--TPPS 91
             AP  + S     SS  WS   + I   PP+
Sbjct: 120 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPT 151

[Close]

BLAST of Spg027188 vs. NCBI nr
Match: KAG7037780.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 3.9e-17
Identity = 52/92 (56.52%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLHGGLNLALIP 60
           MAACVSKQWHKTAEDERLWELICTRHW N  CGNQQLRSV L     R LH      L  
Sbjct: 62  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 121

Query: 61  HIAPLRTTSFHGRESSVRWSVMRSAI--TPPS 91
             AP  + S     SS  WS   + I   PP+
Sbjct: 122 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPT 153

[Close]

BLAST of Spg027188 vs. NCBI nr
Match: KAG6608444.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 3.9e-17
Identity = 52/92 (56.52%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLHGGLNLALIP 60
           MAACVSKQWHKTAEDERLWELICTRHW N  CGNQQLRSV L     R LH      L  
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 61  HIAPLRTTSFHGRESSVRWSVMRSAI--TPPS 91
             AP  + S     SS  WS   + I   PP+
Sbjct: 121 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPT 152

[Close]

BLAST of Spg027188 vs. NCBI nr
Match: XP_022982290.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 98.2 bits (243), Expect = 3.9e-17
Identity = 52/92 (56.52%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLHGGLNLALIP 60
           MAACVSKQWHKTAEDERLWELICTRHW N  CGNQQLRSV L     R LH      L  
Sbjct: 64  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 123

Query: 61  HIAPLRTTSFHGRESSVRWSVMRSAI--TPPS 91
             AP  + S     SS  WS   + I   PP+
Sbjct: 124 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPT 155

[Close]

BLAST of Spg027188 vs. NCBI nr
Match: XP_023521607.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.0 bits (232), Expect = 7.4e-16
Identity = 52/93 (55.91%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLHGGLNLALIP 60
           MAACVSKQWHKTAEDERLWELICTRHW N  CGNQQLRSV L     R LH      L  
Sbjct: 67  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 126

Query: 61  HIAPLRTTSFHGRESSVR-WSVMRSAI--TPPS 91
             AP  + S     SS   WS   + I   PP+
Sbjct: 127 PQAPSTSASASSSSSSSSPWSTFPAMIGSKPPT 159

[Close]

BLAST of Spg027188 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-15
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLH 52
           M++CVSK WHKTA+DERLWELICTRHW NI CG  QLRSV L     R LH
Sbjct: 54  MSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLH 104

[Close]

BLAST of Spg027188 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-08
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 2   AACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLH 52
           AACVS+ W + AEDERLWE  C R W N+    +QLR+V L     R LH
Sbjct: 96  AACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSLGGFRRLH 145

[Close]

BLAST of Spg027188 vs. ExPASy TrEMBL
Match: A0A6J1J293 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111481166 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 52/92 (56.52%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLHGGLNLALIP 60
           MAACVSKQWHKTAEDERLWELICTRHW N  CGNQQLRSV L     R LH      L  
Sbjct: 64  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 123

Query: 61  HIAPLRTTSFHGRESSVRWSVMRSAI--TPPS 91
             AP  + S     SS  WS   + I   PP+
Sbjct: 124 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPT 155

[Close]

BLAST of Spg027188 vs. ExPASy TrEMBL
Match: A0A6J1FMD6 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111446715 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 52/92 (56.52%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLHGGLNLALIP 60
           MAACVSKQWHKTAEDERLWELICTRHW N  CGNQQLRSV L     R LH      L  
Sbjct: 60  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 119

Query: 61  HIAPLRTTSFHGRESSVRWSVMRSAI--TPPS 91
             AP  + S     SS  WS   + I   PP+
Sbjct: 120 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPT 151

[Close]

BLAST of Spg027188 vs. ExPASy TrEMBL
Match: A0A6P4AGW5 (F-box protein GID2 OS=Ziziphus jujuba OX=326968 GN=LOC107420540 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 42/51 (82.35%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLH 52
           MAACVSKQWHKTAEDERLWELICTRHW NI CGNQQLRSV L     R LH
Sbjct: 55  MAACVSKQWHKTAEDERLWELICTRHWANIGCGNQQLRSVVLALGGFRRLH 105

[Close]

BLAST of Spg027188 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 47/76 (61.84%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLHGGLNLALIP 60
           MAACVSKQWHKTAEDERLWELICTRHW N  CGNQQLRSV L     R LH   +L + P
Sbjct: 62  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLH---SLFIWP 121

Query: 61  HIAPLRTTSFHGRESS 77
              P  ++S     SS
Sbjct: 122 LTKPQSSSSSSSSSSS 134

[Close]

BLAST of Spg027188 vs. ExPASy TrEMBL
Match: A0A540NI42 (F-box domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_003621 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 46/76 (60.53%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLHGGLNLALIP 60
           +A+CVSKQWHKTAEDERLWELICTRHW NI CGNQQLRSV L     R LH   +L++ P
Sbjct: 70  VASCVSKQWHKTAEDERLWELICTRHWANIGCGNQQLRSVVLALGGFRRLH---SLSIWP 129

Query: 61  HIAPLRTTSFHGRESS 77
              P   +S     SS
Sbjct: 130 FSKPSSASSSSAPSSS 142

[Close]

BLAST of Spg027188 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-16
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1   MAACVSKQWHKTAEDERLWELICTRHWVNIDCGNQQLRSVTLLPSENRLLH 52
           M++CVSK WHKTA+DERLWELICTRHW NI CG  QLRSV L     R LH
Sbjct: 54  MSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLH 104

The following BLAST results are available for this feature:

BLAST of Spg027188 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941417.1	3.9e-17	56.52	F-box protein GID2-like [Cucurbita moschata]	[more]
KAG7037780.1	3.9e-17	56.52	F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6608444.1	3.9e-17	56.52	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022982290.1	3.9e-17	56.52	F-box protein GID2-like [Cucurbita maxima]	[more]
XP_023521607.1	7.4e-16	55.91	F-box protein GID2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg027188 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	2.9e-15	70.59	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	3.5e-08	52.00	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]

BLAST of Spg027188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J293	1.9e-17	56.52	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111481166 PE=4 SV=1	[more]
A0A6J1FMD6	1.9e-17	56.52	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111446715 PE=4 SV=1	[more]
A0A6P4AGW5	6.1e-16	82.35	F-box protein GID2 OS=Ziziphus jujuba OX=326968 GN=LOC107420540 PE=4 SV=1	[more]
A0A0A0L2H5	6.1e-16	61.84	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]
A0A540NI42	6.1e-16	60.53	F-box domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_003621 PE=4 ...	[more]

BLAST of Spg027188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	2.1e-16	70.59	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 2..69
None	No IPR available	PANTHER	PTHR12874:SF21	F-BOX DOMAIN-CONTAINING PROTEIN-RELATED	coord: 2..69
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 2..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg027188.1	Spg027188.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding