Spg027119 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027119
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold8: 2618296 .. 2624713 (+)
RNA-Seq ExpressionSpg027119
SyntenySpg027119
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATTCGTGGGAGAAGATGAGGAGGAAGAGGTTGGAGAAGAGGAAGAGGAAGAGGAAGGGAATTCGAGGGATAGAGAAAGGAATAGGAGTAAAGAAGTAATTAAAGAAGACATATAATTCCGAAAACTAATAGAAAATTAGTAAAGTTCTTCACCCTAATTAAAAATTTGTCACCTCAATTGGTCATGTCAAATTTTTGTTAGGTCGATGACGATCAAATTAAGTTCAAGAATTATTTAGAATCGTTTTTCAAACCTCAAGGATTAAAATGTATCTTTTGAAACCTCAAGAATCAAATAAACAATAACCCCAAACCTCAAGGACCAAAAGTGTTTTTTTTTTCTATATAATTTTCAAGCCTGCAATGAGAAGTGTTAAAACATTGATATAATTAAATTACATTTGTCATGATCCATCCGCTTAAGCTTTTGGGTTGATTGGTGATTTAACAATATTTAATGCACATCATGAGCTATTTCTAGGACTTGAATATTCTTAGTTTTGATGCTTAAACGGCTATTGTCACTTGCGTATTTGAACGACCCAACTTCTTAAAAAGCCTTAAAGGAACCGTTACAACAATGCATGCTTTGGAGGCCCTTTTAAATAAAAATATTTTAAAACATAAACACTTATTTTAAGTAAAAACTTTAAAACAAAACTTTTATTCGGGATCCCTAATTTTAAAGGTTTTAAATATTCTTAAATAATTTTTTTAAAATAAGAATTTACATGGCCTCTAGAAAATTTCTCAAACAAATTTACAATGAATAAAAAAAATAGTTCTTAAAGCGGAAGAAAAATAACATATGAAATTCAATATAGTTCTCTCATGGCTGCCTTTCATATTCTCATCAATCGTCTTTCACCTGCCCTTGCCTATACCTGAAAAAAATATTTTCGAAAAGAATGAATATTTTAAAATACTCAGTAAGTGACCATACTATTGAGGTTGAGTCACACTTTAAAAACATTTAAAAAAAAAATCAACAACAAATATAATTTTGGTGGCTCTAAACTTTATTTTAAACTTTCTAATGAGAGAGAATATACATCAATTTCATGCATATCCTAGACACATCAATTTTATATGTCTCCTACGGAGGCCGTCAATTTCACGAAACCTCGAGGTCGTCAATTTCACAAACCTCGACTTAGGTACATCAATTTCATGTTCCTAAGTCCTGTGTAGGCATCTCTGAATGTACATCAATTTCATGTACACTTATAAATTTAAACTTATAAATAATTTAAACTTATCCCTTTAATGGAATTTAAACTCATTCCTTTAATGGAATTTAAAGAGACCACCAATCAAATATTTCAAACATCAACAATGCAAGCAAAAATAATAAATTTCATGCTTTCAACAATTTTCATAAATGCATACTCAATTAAAAATAATAAATTTTCATGCACAATTCTCATGCTTTTAATAATAATAAGAAATTTCAAGAACAACTCATAAGCACGAAAATTTTAGAAAATCAAACACGCACACCCAATTAAAAAGTTCAACAGTAGAACCACTTACCTTGCCTTTTAACTCCTTAATTTAATTTGAGAATTTAATACTAGCACAACTGATCTCGCCCTTAATTGAACTAAGCGATTCAAGATCGAGGCTTACCCAAACGAAATAATGCTTGCTGAACGAACTTCAAATTTCTCCAAGATTCAACGATTCGACTCCAAATCACTTGAGAAACCAAAGATTCAAAGACTAATGTTAATGGGCATTCATGACCACAAAATAAATTAGTCAAACTTTATTAGATTACATAGGGTTCCACCTCAAAACCAATTGGCAATGAGTGAAATACCCCATCTATCTTATAACTTGTGAGGTCTCCACTAATCTTTTCAATGTGGGATCCTCAGCATGCCCCCTCAAGATGGTGCCTCTTTGGGTTCACCATTCTTGGATCGGATCCCAATATTTTTTCTTGGACCGAATACCCGTTTGGGTTTTATGGGCTCTGATACCATATTAGATTACATGGGCTTCTATCTCAAAACCAATTGGCAATGAATACCCCATGTAATCTAATAAACTTCACCCCAAAAGCACTTACCCACTCCAAAATCATCCAAAAAGCAAGCTTACTGTCGCACCTACACTGCCCAGTCGCCGGAAGTCACAGCACCGCCTCAAGAAGTCGTCGCCGAACACTGCTGCTGTTGTGGTTCAAGGTGCGCCGCCGCGGATCCTCGTGAACGTCGGAGAGTCGATGACCTGCCGCTGGGGATCACGCCGCTGCTGTGCCTTGCTGAAACCGATGCTGCAGTCGAGGAGCTCGCTGGAGGGACGCCTGAAAGTCGCTACTGTTATCGCCCAAACGCCTGCGAACTCACCGCTGTACGTCGTCGCTGCACCGCCGTGGAGTGGTTGATGTCGCCGGAGATGAAAGGGAAAAGAGGGGCTGCTGGTCGGCTGTTGTCCTGGAGAAGAAGAAGAGAGTTGAGGGAAAAAAAAAATAAAAACACCTTGGGCTGCAACTGAAATAAAAAGGGGAACATTAGGGCTTGGTTGGCTTGACTTAATCTTCTCAAAATTTATAAGAGTGTCATTCCAGCCCTACTATTTAACATTTCACCAATTTTAGAAATTCCAAATTTCCCTTTTAACTCAAATTAACTCTCAAACTAAAATAATTTGAATTTTCCTAAAATCACGGGTGTTACAGTATTTGTATACTTTGTAGGGTTTGAGCATTTTGAGAAGAAATAAAGTTTTCAACGAATAGAAAATCAAGTCAAATGAGGGAAAATTATCCAATTAATGATTTAGAAGAGGAAATGAAGCCAAAAGAGCTAAGGAGGGACAATGTTGAAATGCTACGACAAATTAGCATAAGTCAAGCCATCAGTATCGATAACGTCTCAATGCTACGACAACAACACAACAACGCCACGATGATTGAAACACGCATGCACTTAGTAAACTTTTTCGTTTGTAGGGTCTTGACGATATACACGACGTCTAAATGCTATGACACTTCTCTTTTATATCACACATTTATTTTGGACAGCGTCCATTTTCCTATAAAATTATATCACTTTGGAGTGTCATTTGGAAGAGAAGTCTCATTGTTGACCTAATATTAAGTTTTGAATTTGGGGAGTTTTGAAGACGACCTTGGACCCTATTAGAGGGATTTTCAAAGCTCAAGATTGGGGAGATAGTGTCAAGCACAGGATATCCTCACACTAGACATGATTTGTTTTCTTTGCCTCACCTTTGTGTGGTGAATCTAACAAACAAGAAACAACAAATCAAAGAAAGGGAAGAGAGAAAACACACACAAATTTATAGTGGTTCAACCATCTTTTGATGGTCTACATCCACTGTAACAAAGGCAGGGGGCAGTTGATCTTATTATCGAAAATGGGAGCAAAATACAGAGGAGATAAAACTCCTTTTAGAGCCTCATTTCCCGAAGGTTCTTTTCCCAACCTCACCTCTCTCATTCACACACCCTTCACCCTGCACTCAATGGCCAACGAAATAATGATTTATAGTCATTTTGTTACGACAGATTCGGGGCCCAAAAATGAGAGGGATAATACATGGGAAAAATACTAATACAACTCAGATTTAGAAATAACGAAAGTTGTGCTGACGTGGGCATTATTGGTACATGTCACCAACTTCACAAATCTCCCTCTTGACATGTACTTCCATCAAAAAGATCAAATCTGCCTGCTGCCTCTATGGTCAAAATCATCTCAGCAACACTTCAGCCAATCCCTATTTTCAATAGAGACATCAGATCCACCATTCGTTTAGCATTGAAAGGTTTTGTCAGCATGTCGGATGGACTGTTCACAGAGGTTATCTTCTCCAAGTTCACCTCTTTGCTAATGACTTTTTCTCTAAGATAGTGATACCTTATATCGATGTGTTTCGAGCGATCATGATACATAGAGTTCTTGGAGAGTGTTATTGCACTCTGGCTGTCACAAAACACAGTAAAAGGATCGTCAGTTCCAAGTAATTCAGTAATAAGTCCTCTTAACCATATACCTTCCTTTATGGATTTTGCTAGTGAGATGTATTTGGATTCTGTGTGTAAACCCGAGACTTCTCTAGGATCATTTTCTCTTGTCATCTCTTGTTGGGATTACTAAGTTAAAAGAAGAAAGGAAAGAAAAGAAAAGAAAAAGTAAAAGGAAAATGGAAGGAAAAGAAAAAAAAAGAGAGAAAAGAAATCAGCAAAGAAAAAAAAAAAAAAAGAGAAAAGAAAGGAAGTGGAAATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCTATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTTGGTGCAAACTGTCAACCTCTGGTTTTTTATTCCGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGTTTGATTTTCTTGAAATTTAGTTCATTTTCTAACAAATGTAATGAAGGAAGCTTGACCTAAATCGTATGAGAAGTGGATGGTTTTTGGAATGGAAAATAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTGTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGTAAAGCTTATTCAATTATCTACAACTTTCATGAAGAATTCGTGAGCCAAAAATGACTTTAAGTAGGTTTAAATTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTTGAATCTGTGTTGTCTGACTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTGCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTGTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGCTATGGTATAGAATCTGGAAAATCTGGAAAGTAGAATTGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGAGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTATATGCTTTACCATGAATGATATATGATTTTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAATAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAATACTTTTAAACGATTTCCAGTTTTTCATGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATTTGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGAAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAAATCGGTCATGTTAGTTAAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATGTTTTGGAAAGCCTTTATTATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACCTTTAAAGGTTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTGAAGTTAGTCACTCACTGGGCTTCGTAGCTCATCTTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAGGTTATATCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTGTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGCGGTGTGACAACTTGCTATCAGAGCAGTTAG

mRNA sequence

ATGATATTCGTGGGAGAAGATGAGGAGGAAGAGGTTGGAGAAGAGGAAGAGGAAGAGGAAGGGAATTCGAGGGATAGAGAAAGGAATAGGAGTAAAGAACACTTACCCACTCCAAAATCATCCAAAAAGCAAGCTTACTGTCGCACCTACACTGCCCAGTCGCCGGAAGTCACAGCACCGCCTCAAGAAGTCGTCGCCGAACACTGCTGCTGTTGTGGTTCAAGGTGCGCCGCCGCGGATCCTCGTGAACGTCGGAGAGTCGATGACCTGCCGCTGGGGATCACGCCGCTGCTGTGCCTTGCTGAAACCGATGCTGCAGTCGAGGAGCTCGCTGGAGGGACGCCTGAAAGTCGCTACTGTTATCGCCCAAACGCCTGCGAACTCACCGCTGTACGTCGTCGCTGCACCGCCGTGGAGTGGTTGATGTCGCCGGAGATGAAAGGGAAAAGAGGGGCTGCTGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTTGGTGCAAACTGTCAACCTCTGGTTTTTTATTCCGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTGTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGCTATGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGCGGTGTGACAACTTGCTATCAGAGCAGTTAG

Coding sequence (CDS)

ATGATATTCGTGGGAGAAGATGAGGAGGAAGAGGTTGGAGAAGAGGAAGAGGAAGAGGAAGGGAATTCGAGGGATAGAGAAAGGAATAGGAGTAAAGAACACTTACCCACTCCAAAATCATCCAAAAAGCAAGCTTACTGTCGCACCTACACTGCCCAGTCGCCGGAAGTCACAGCACCGCCTCAAGAAGTCGTCGCCGAACACTGCTGCTGTTGTGGTTCAAGGTGCGCCGCCGCGGATCCTCGTGAACGTCGGAGAGTCGATGACCTGCCGCTGGGGATCACGCCGCTGCTGTGCCTTGCTGAAACCGATGCTGCAGTCGAGGAGCTCGCTGGAGGGACGCCTGAAAGTCGCTACTGTTATCGCCCAAACGCCTGCGAACTCACCGCTGTACGTCGTCGCTGCACCGCCGTGGAGTGGTTGATGTCGCCGGAGATGAAAGGGAAAAGAGGGGCTGCTGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTTGGTGCAAACTGTCAACCTCTGGTTTTTTATTCCGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTGTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGCTATGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGCGGTGTGACAACTTGCTATCAGAGCAGTTAG

Protein sequence

MIFVGEDEEEEVGEEEEEEEGNSRDRERNRSKEHLPTPKSSKKQAYCRTYTAQSPEVTAPPQEVVAEHCCCCGSRCAAADPRERRRVDDLPLGITPLLCLAETDAAVEELAGGTPESRYCYRPNACELTAVRRRCTAVEWLMSPEMKGKRGAAEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRILVQTVNLWFFIPFELHRRNQEVSCRVFENEEFDVYFINCGSVLRKLWVLEAMVEIELPVPDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTCYQSS
Homology
[Close]
BLAST of Spg027119 vs. NCBI nr
Match: TYK11725.1 (uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-21
Identity = 69/144 (47.92%), Postives = 77/144 (53.47%), Query Frame = 0 

Query: 202 ELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLE-------------------- 261
           E+H+  Q+   VSCRV ENE+F VYFINCG VLRKLWVLE                    
Sbjct: 11  EVHKSYQKLYLVSCRVSENEDFYVYFINCGYVLRKLWVLEVRISNLENLKMPRGNRPSLQ 70

Query: 262 ----------------------AMVEIELPVPDTLPTSAESFRSSSSTWFNVSVGSTGIV 301
                                 A+VEIELPVPDTLPT         +  +    GS GIV
Sbjct: 71  TGELDKTVIFLLSTLSVLCDNDAVVEIELPVPDTLPTLFYKPSDVRAASYVCWEGSAGIV 130

[Close]
BLAST of Spg027119 vs. NCBI nr
Match: TYK14495.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 8.7e-21
Identity = 73/159 (45.91%), Postives = 77/159 (48.43%), Query Frame = 0 

Query: 202 ELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLE-------------------- 261
           E+H+ NQ+   VSCRVFENE F VYFIN G VLRKLWVLE                    
Sbjct: 727 EVHKSNQKLYLVSCRVFENEYFYVYFINFGYVLRKLWVLEFRISNLENLEMLRGNRPSLQ 786

Query: 262 ---------------------------------------AMVEIELPVPDTLPTSAESFR 299
                                                   MVEIELPVPDTLPTSAESF 
Sbjct: 787 TGELDKTVIFSLSTLMYSMTTMLSSISKSAGRKSESADKLMVEIELPVPDTLPTSAESFE 846

[Close]
BLAST of Spg027119 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-20
Identity = 92/257 (35.80%), Postives = 110/257 (42.80%), Query Frame = 0 

Query: 153 AEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIL----------------------V 212
           +EHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRI                       V
Sbjct: 73  SEHFEERVK-EEEEEFRGLRLKKIGKSSCKANHCRIWSTGFSSKPRGFLVFSDALSILEV 132

Query: 213 QTVN-------------LWFFIP----------------FELHRRNQEVSCRVF------ 272
           Q  N              W  +P                  +    + +S R++      
Sbjct: 133 QKSNQKLYWDIESGKSGKWDVMPRGNRSSLQTGQLDKIEISIDYMTEILSLRLYGTVCPQ 192

Query: 273 ------------ENE--------------------EFDVYFINCGSVLRKLWVLEAMVEI 302
                       +N+                     + V  +N G   R L  ++  +EI
Sbjct: 193 VIFPLSTLSVLRDNDAVVSVGQTHYDKDDGVPGGPHYIVGLVNVGCTGRVLHHIDRSLEI 252

[Close]
BLAST of Spg027119 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-19
Identity = 64/131 (48.85%), Postives = 77/131 (58.78%), Query Frame = 0 

Query: 202  ELHRRNQEVSCRVFENEEFDVYFINCGSVLRKLWVLEAMVEIELPVPDTLPTSAESFRSS 261
            E+H+ NQ++   +F         ++  SVLR     +A+VEIELPVPDTLPTSAES  S+
Sbjct: 1402 EVHKSNQKLYLVIFS--------LSTLSVLRD---NDAVVEIELPVPDTLPTSAESLESN 1461

Query: 262  SSTWFN-------------------------VSVGSTGIVRGDDVCWLHAVFRAKLAGGP 308
            SSTW                           ++VGS GIVRGDDVCWLHAVFRAK AGGP
Sbjct: 1462 SSTWLELYFESVHVEMFCYFTNQGMSGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGP 1521

[Close]
BLAST of Spg027119 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-19
Identity = 64/131 (48.85%), Postives = 77/131 (58.78%), Query Frame = 0 

Query: 202  ELHRRNQEVSCRVFENEEFDVYFINCGSVLRKLWVLEAMVEIELPVPDTLPTSAESFRSS 261
            E+H+ NQ++   +F         ++  SVLR     +A+VEIELPVPDTLPTSAES  S+
Sbjct: 1402 EVHKSNQKLYLVIFS--------LSTLSVLRD---NDAVVEIELPVPDTLPTSAESLESN 1461

Query: 262  SSTWFN-------------------------VSVGSTGIVRGDDVCWLHAVFRAKLAGGP 308
            SSTW                           ++VGS GIVRGDDVCWLHAVFRAK AGGP
Sbjct: 1462 SSTWLELYFESVHVEMFCYFTNQGMSGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGP 1521

[Close]
BLAST of Spg027119 vs. ExPASy TrEMBL
Match: A0A5D3CJL4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00370 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-21
Identity = 69/144 (47.92%), Postives = 77/144 (53.47%), Query Frame = 0 

Query: 202 ELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLE-------------------- 261
           E+H+  Q+   VSCRV ENE+F VYFINCG VLRKLWVLE                    
Sbjct: 11  EVHKSYQKLYLVSCRVSENEDFYVYFINCGYVLRKLWVLEVRISNLENLKMPRGNRPSLQ 70

Query: 262 ----------------------AMVEIELPVPDTLPTSAESFRSSSSTWFNVSVGSTGIV 301
                                 A+VEIELPVPDTLPT         +  +    GS GIV
Sbjct: 71  TGELDKTVIFLLSTLSVLCDNDAVVEIELPVPDTLPTLFYKPSDVRAASYVCWEGSAGIV 130

[Close]
BLAST of Spg027119 vs. ExPASy TrEMBL
Match: A0A5D3CSJ5 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00060 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.2e-21
Identity = 73/159 (45.91%), Postives = 77/159 (48.43%), Query Frame = 0 

Query: 202 ELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLE-------------------- 261
           E+H+ NQ+   VSCRVFENE F VYFIN G VLRKLWVLE                    
Sbjct: 727 EVHKSNQKLYLVSCRVFENEYFYVYFINFGYVLRKLWVLEFRISNLENLEMLRGNRPSLQ 786

Query: 262 ---------------------------------------AMVEIELPVPDTLPTSAESFR 299
                                                   MVEIELPVPDTLPTSAESF 
Sbjct: 787 TGELDKTVIFSLSTLMYSMTTMLSSISKSAGRKSESADKLMVEIELPVPDTLPTSAESFE 846

[Close]
BLAST of Spg027119 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.4e-21
Identity = 92/257 (35.80%), Postives = 110/257 (42.80%), Query Frame = 0 

Query: 153 AEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIL----------------------V 212
           +EHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRI                       V
Sbjct: 73  SEHFEERVK-EEEEEFRGLRLKKIGKSSCKANHCRIWSTGFSSKPRGFLVFSDALSILEV 132

Query: 213 QTVN-------------LWFFIP----------------FELHRRNQEVSCRVF------ 272
           Q  N              W  +P                  +    + +S R++      
Sbjct: 133 QKSNQKLYWDIESGKSGKWDVMPRGNRSSLQTGQLDKIEISIDYMTEILSLRLYGTVCPQ 192

Query: 273 ------------ENE--------------------EFDVYFINCGSVLRKLWVLEAMVEI 302
                       +N+                     + V  +N G   R L  ++  +EI
Sbjct: 193 VIFPLSTLSVLRDNDAVVSVGQTHYDKDDGVPGGPHYIVGLVNVGCTGRVLHHIDRSLEI 252

[Close]
BLAST of Spg027119 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-19
Identity = 64/131 (48.85%), Postives = 77/131 (58.78%), Query Frame = 0 

Query: 202  ELHRRNQEVSCRVFENEEFDVYFINCGSVLRKLWVLEAMVEIELPVPDTLPTSAESFRSS 261
            E+H+ NQ++   +F         ++  SVLR     +A+VEIELPVPDTLPTSAES  S+
Sbjct: 1402 EVHKSNQKLYLVIFS--------LSTLSVLRD---NDAVVEIELPVPDTLPTSAESLESN 1461

Query: 262  SSTWFN-------------------------VSVGSTGIVRGDDVCWLHAVFRAKLAGGP 308
            SSTW                           ++VGS GIVRGDDVCWLHAVFRAK AGGP
Sbjct: 1462 SSTWLELYFESVHVEMFCYFTNQGMSGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGP 1521

[Close]
BLAST of Spg027119 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-19
Identity = 64/131 (48.85%), Postives = 77/131 (58.78%), Query Frame = 0 

Query: 202  ELHRRNQEVSCRVFENEEFDVYFINCGSVLRKLWVLEAMVEIELPVPDTLPTSAESFRSS 261
            E+H+ NQ++   +F         ++  SVLR     +A+VEIELPVPDTLPTSAES  S+
Sbjct: 1402 EVHKSNQKLYLVIFS--------LSTLSVLRD---NDAVVEIELPVPDTLPTSAESLESN 1461

Query: 262  SSTWFN-------------------------VSVGSTGIVRGDDVCWLHAVFRAKLAGGP 308
            SSTW                           ++VGS GIVRGDDVCWLHAVFRAK AGGP
Sbjct: 1462 SSTWLELYFESVHVEMFCYFTNQGMSGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGP 1521

The following BLAST results are available for this feature:
BLAST of Spg027119 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11725.12.3e-2147.92uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa][more]
TYK14495.18.7e-2145.91putative polyprotein [Cucumis melo var. makuwa][more]
TYK08801.11.9e-2035.80hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa][more]
KAA0042035.12.8e-1948.85DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK17971.12.8e-1948.85DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Spg027119 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027119 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CJL41.1e-2147.92Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CSJ54.2e-2145.91Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G... [more]
A0A5D3CAC69.4e-2135.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TKT01.4e-1948.85Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5D3D1501.4e-1948.85Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
BLAST of Spg027119 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 146..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027119.1Spg027119.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0016787 hydrolase activity