Spg027102 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027102
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Locationscaffold8: 3072767 .. 3081162 (+)
RNA-Seq ExpressionSpg027102
SyntenySpg027102
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTTCGGCGATTTCCTGTGATTCCGACTGTGGGTTTTCTCCTTCAACAAGCTTTGGTGTTTATTATGCACCTACAGCAGTGGGTAAGAACCCTCCCTCCTCGATCTTCCGGTGAAAAACCACGTATCTTAAAAAAAAAAAAAAAAAGAAGAAGAAAGGTCGAAGTTAAAAGTAGAAGAAGAAAAGAAGAGAATGCGAAGAAAAAAAAAAAAGTTGCCGGCGAACGGTGGTTGTCGGCGGCCGCCGATCATCGGCCATCTGCTGCGGCTGAAGAAGAAGAGAAATAAAAATAGTAAAAAGAATAATATTTTTTATTATTTTAATATATTTATATTTTTAAAAAAACAAAAATAATTTTTTTAATAAAAAATTAGTGTCACGTCAGCATTCCGTTAACTATTAACGGAAAGTTGGATGGAGGGACCAAAATGAAACTAAAACCAAACCTCGGGACTAAATTGTTGAGTTTGAAAACTCAAGGACCAAAATGAAACCTAATTCAAACCTCAGGGACTAAAAGTGTATTTTTCCCTTATTATTATTTTCTGTCTTCTTTCATCATCATCATCTTCCTCCTAAACCCTAATCTCATTCCAACCCTAATGGCCAACCACCTCCATTGCCATCAGCAACCACCTTCGACGACTGTTGTTGCCGTCGACGACAAACTCTGGCTACAATTCCGACGACCATTCCAACAACTATTTTGACAAAATTCCGTCGATCGCTACCACTTGTTAGAAACTTTTTTATGACAGCTAGAATTTTTTTTTTCCTTTTAAAATTTTTTTTTCTTCTTTATTATTTTCATTTTGAAAAATAAAAAAAAAATGAAAACACAGAAGAAAAAAAAATAGAAGAAAAGAGGTAAAGAGAAAGAAAGAAAAAAGAGGGGAAAAATTTTGGGTTAGAAGGAGATTAGGGTTTAGAAGGAGGAAGATGATGATGATGAAGAGTATGAAGAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAGAATAATATTTTATTAATTTAATATTATTTTATTTTAAAAAAAATTAAAAACAAATATTTAATAAAAAAAAATAGGGCCACATCAGAATTCGTTTGTAATTAATGAAAAATTAAGCGAAAGGACCAAAATGAAACCTAACATAAACCTCAGAGACCGAAAGTGTACTTTTTCCCCAACACTTGCCTACGACATTTGGATTGAACTCGATGAGCCATATATTGTCCACACTCACCTCAACCTCCATATTTGACGTCTACCCCTCATCCCGAATGAATATATACCCTAGGATCTCGATGCGTCACATACTAATCCCGAGGGGCATGATGAGTGTGAGAGGACCGACCTTCTTCTGTTGTTATAATTCCTGGATGGTCAGAAGTAGAGGTCGTTAGAAATTATCCAAACATCATAGGTGTTCATATCATGAAATCTTGGGAAAATGACTGTGTAGAATGGGGGTGGTGGAACTACATCTGCAAAACCATGCTGAGTTGTGGATGATATTGTTGCTCTAGTGTATCATCATGTTATTCAACTAGGCTCATTCAAGAGCTACACGAAGAAGTCCTAGAGCTAAAGCTAAGGGAAAGAAGGTTGCTCAAAGAGAAGAGATTGAAGAAGAGAAAATTGTGACTGAGGAACAAGAAGAAGAAGCTCAAATTCCAACTCCACAAAGCCCTCTTGCAAAGAAGAAGAATTCCAAAAAGAAAGGAAAGGAGTCTATGCTAACAGTGAGTGAAAGTCCAAGGGAGAAATTCATCAATGTTGCTGCTAAAGCAAAATTTGAAGAGCTGAAAGAGAGGGAGCTTCTTCCGGAGAGAGGCTTTGAATCAGACATGAAAAAGTTGCCACTATTCGTTTCTACACTCATAACAAATCACAGTTGGAGGCATTATGTCAGAAGCCTTAGCCAGCCATCATTCCTTTGGTGAAGGAATTTTATGCTAATGTGCAAGACAATGGGCTCTTTCAGACTAAAGTACGAGGGAAGTGGATTCATTGGTCTCCTTCTGCAGTCAACGAATGCTACAACTTGCCAGGACTATCCTCAAGCTATCTTTAACTCAATGGAGATTGCCCCATCAAACGAGTAGGCTCCAATTAGCCTTAGTAACATGTGGAGTTGAAGGAGCAAGATGGAAAATGTCCAGAAATTCCAATAGGACACTTTTGACCGCTTATATGAAGCCTGAAGCTAACGTGTGGTTGACATTTGTGAGAAACAGGCTGCTACCAACTACTCATGACACTACAGTGTCTAAAGAGAGAAACCTTGTTTTTTTCCATTTTGAGAGTGTTGAGCATTGATGTTGGAAGGATATTGGCAAGGAAAATTTTACTTTGTGCAAAGAGAAAGCAGGGGAAGCTGTTTTTCCCAAATTTAATCACTGCCTTATGTTTGAGAGCCCAGGTTCAAGTTGAAAAGGATGAGGAGGTTTTGATGGATAACGGCATTATAGACTCGACGTCTTTAGCAAGACTTCAAGGAGCAAGTAAGGGGAGAAAGAGCACCAATAATATAGTCTGTGGAATTCATGAACTTTTGAAACAACCAAGAAGAATGATGCAACACATGGAGCATAATGAAGTTCAACAGAAGCTATACTGGGAATACGCTCATCAGAGGGACTATGCTATGGAAAAGGCGTTTGAATTTGGCTCTGAGGAACTTCCTCAACCTTTCTCTCAATTCCCTGAAGGTGTGCTCAACCCGTGGTGCCCATCCTCATCTATGGAGAAGATGATGATGCTGCTGAAGGTCAAGAAGATTGAAGAAGGAAAAGAAGGGAGTCTGTTGTTGTTGTTTGCTTGCTATCTTTATGTTTTGTATCTGTTGTTGTTGTCGTCTGTCTTTATATTCTGTGATTGTCTGTTTTAGTTTTTATTTTGTATGGCTGAAGTGATGAAAAAGATGAGAAAAGTGCATGAATGTATGGCTTAGTTTGTTGTAGCCATGGTCACACGAGCTTAATAGAAGTATCTCTTCTGAAAATGATGAACGTGTGCATTATTTGTTGTGTTGGCTTCAATTTTCTTTTTACCAGTTGAATGGCCTGTTGTTTCTTCGTTTGTCTGCTACAATGAAAACATTTTTATTTTTGGTATGGCTAAATGCATGACTTGAGTATATGAAGCCATATTCAAATAAGATTAAGGAATATATCTACTGGAAAAATGTTGGATGTTGTCTGATTGCTGTGAAATTGCAATTAGACATTGGGTCGGTTTTGTCTTATTGTATTTCATTAGCTGCTGTGATTTTATGCTATAAATGCTTAGGAAGTGTCATTCTTGCTTGAAATAAAATTTTGAGTTAAATTGACCATCTGATGCTTGCTTGCTAAAAGCTTATGCAACAAATTTGAGTTGGTGAATTTGCTGAATGCTTTGAGCCTATATAGAAGTCATTTTTTTTTTAAATTTGATTTGTCCAGCTTGATTAGAATTGGTTTAGGGCCTGGTTGTAGCTCTTAGTTGTGCTTTTGTTCAAGCTTAGTTTTCTGGATGCTGCAACAACAGCTATACTTGGTTAAAAAGTCTATTTTAATGTGTAAATGTAATGTTATGTCTTATGATCCTTAGAAGCTTAGCCTATTTGCTTAGTTAGATTACCATGTTATGCTTTATGTCCTTAGGTAGATGGGAAGCTTCCTAATTTTCTTTCTTAGCTTAACTCAAATCTTAGGAAAGCTTGTTCCTAGTCCTTTTGCCCAAACCTTATATTAATCTTCCTAAGCAATAAGTCTTAGCTTCTCTAAAAAAAATAAGTTTGGGAGTCCTTGCCTTTTTCTTATTCATTGGGGACAATGATAAATTAAGTTTGGAGGTGAGGTAACCTTTAAAAAGAATGAAAATAAAAAAATTGAAAATACAGCTTAGAATGCACTCCTCTTTGTTTTAGTTTTGTCTAAGGTGCACTCCTCTCCCTTTGTGAAAGTTTTCTATTTCCTTGAGCTTGCCTAGTAACCAAGGGGATTTATGATACCCATAGTTTGCCCCTGCGCCAAAAAGTAGCTCAAGGGAAAGAGAACATTCTTAAAAAATGACCAGAAAAGAAAACGATAAAATGAGATGGAAAAAGGGATGAGTGTTGGCTTGAAAGTTACCATCTTCCCCAGGGCTTAGGTAAGCTTCACCAAAAAAGTGTTGTCATTCTGAGAAGCAAGGAAGTAGTTGCTAGTGGGAAAATCTTAGTCAATCCTAAGAGAAATGAGTGTAGTTCTCGTTAGATGATGAGCTTGGAGGCTAAGGTGAGTTTCACCAAAAAGTGTTGTCATTCGTGAACCAAAAATCTATGACCTATGAGACTTTCTAAGCTGGTAAGAAAAGAGAAAAAGGCTAGAGAGAAGTTATGATTGAGCTTAGAGAAATTAGAAGTTTGGCATAGGGATTGTAGGATTGCTTGGCAAGCTTTAGGATTGAGGTTTGAGCCAAATTAAGTATATAAGGTTAGTGGATGATTGAAGACTTGAATCATTGCTCGTCCTTGAGCAATGCTAGACTACAAAACTCTCACAAAAGCATCTCATATCTACCTTGCAGTCAAAATGGCCTAACTGATAGCACCTAGCTACTTCTTAACAAGTCTGCCTCTCTGAATGCATACAACCCCTCAAAATCTACACTACTTTTAAAATCACCCTTTAACTTGACATTTTCAAAACCTTAGTATTCTTCTATTGATCCTCTAGCTTAGTCTTTTTCCAAGAGCCATCATATCAAATTGTACCAACCTACTGATATCAAGGAAGTCACTAACCTTCTATACTTAATTTGGCTCAAACCTCAATCCTAAAGCTTGCTAAGTAATCCTACAATCCCTATGCCCAACTTCTAATTTCTCTGAGCTCAACCTTAACTTCTCTCTAGCCTTTTATTCTCTTTTCTTACCAGCTTAGAAAGTCTCACAGGTCATAGCTTTTTGGTCCAGGAATAGTAACACTTTTGGGTGAAACTCATCCTAGCCTCCAAACTCATCACCTAACGAGAACTACACTCGTTTCCCTTAGGATTGACTAAGATTTGCCCTCTAGCAACTACTTCCTTGCTTCTCAGAATGACAACACTTTTTGGTGAAGCTCACCTAAGTCCTAGGAAGATTGTAACTTTCAAGCCACCACTCATCCTTTTTTCCATCTCATTTTATCTTTTTCTTTTCTGATCATTTTTTAAAAATGCTCTCTTTCCCTTGAGCTACTTTTTGATGCAGGGGCAAACTATGGGTATCATAAATCTCCCTAGTTACTAGACAAGCTCAAGGAAATAGAAAACTTTCACAAATGGAGAGGAGTGCACCTTAGGCAAAACTAAAACAAAGAGGAGTGCATTCTAAGCTGCCTTTTCTATTTTCTTTTTCAATTTTTTTTTCATTTTTTTAAAGGTTACCATACTTTTGAATATGTAACAAAATAGTCATATACTTTTTCAACACAATTTCCTGTAGTGTTCTAATGTCTACGGATGGATTGCACTATACAACACTATGAACCTCGACTACAACTAGGTTGAAGTTTAATTGACTATGATCTTGACTCAACCTCGCGTACACACATGAATAAGGGTCATTGTACTGAGTTTTCTCAAATCTTCCATGTTGTTTAAGACAATAAGCACGAAGCTGCCACGTACAACATTGTCCATATTACTTACACTTGACGACCTATATTTTCTTGTTTGACTCCAATACGTCAAAGTGTTGATGTCAAAGAATAGAATAGCTCCTGAAAACATTCTTTAAATTAGTTTTTGATTTGAAAATCATCCCTTTAAGCAATTTATCTGTTGGGTTTTATGTCCTAAAACTCGTGGATAGTAAATGTAACATTTGACCGAACATTAATAAAATGACATTTGATGTATTGTTCACTTATTATTGTTAGTATTGTGTTTATCTTGCCTAAATAACCCTAATCCAATAAACTAAACATCCTAGGCTGTTAGTATGAGACTTGAACTGTATGTGGGGACATACGGGGATCACTGTTCAAGTTACAGCCTAAAGGGTCTATAGTATAGGTATAAAGTTGGGTACCTTATCTTGGTGACACTATGGATATGACCCGCTTTGTATTTTGATACAAACGCAATGATCCAACGCGTTCGTGTAGGGGACATGCGAGTAGGGGTATCCTATGCAATGAGTTTGCATAAGATCGGACCGCGAAATAGCAACCACTAGCTGTAACACCGTTGACTAGTTAAGTTTCTATTTCACTAGGATGACCTAGGCAACTTAGTCTCAATCCTGAGTGGGTTATGGACTCCTGTTCACGAAGGATTGTCCTTTGATTTGTATGGGTGAAAGTTGCCTGCACGCCGACTCAATAAGTCTACCATTTTGGGGACAAGACCGAGTGGGGAGTTGGAAACATAATCACACAAGAAGGAATTCACTACTTCCCGACTTTAGGGTAAGTAGATGTGTGTTCCCTTAAGTGGTGTCTCCGGGTCGTGAACAAAGGGCCCTGCCCTCTCTATGGCACGAGAGGGATTTCTGTTTCTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTTGTACTTAGATGTAGAGGTAATTCAGGGGTAAAACGATAATTTGACCCAGCTGGTATTACGAACACACGTAAAAGACTGACTTGCTGTTATTGGTCAATATCCGTGGACACAGAAATATATCTGCAGTGAGAAGAGTGCAACTGTGGTTCTATAGTGGAGTGAATCACAATTAACGAATATTAATTAACTTGGTTAATGAGTTTAGCCAATTAATCTCATATCGTTAGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACCGGTAGCTCATAAAGGTTGTTGAGGTAAATTCACTAAGGGAAATAATATAATGTATGAAGATACATTATAATATAAAGTTTTGATATTATTAAACTTTATAATATAAATTTATTTTGAATATTGAATTAATTTATGGGAGAATTAAATATTTGAAGGAGTTCAAATATTAAATTTAATATGAATTGGATTCATATTAAAACTATAGGTTAAAATTAATGTGCATTAGATGCACATTAAACTATAGGTTATATGAGAGAGATATAATTGAATATTATTCAATTATGGGTTAAATTAAATATGTGATATTTAATTTAGTAATTAATTAATTGGTGAATTAATTAATTATTTAATTAAATTAAATTGATTTAATTAAAACTATAGGTTATGTGGGAAATACTCATTTAATATGATTTAAATGAAAAAAAATGAGTTGGTTAATTAAATGAGGATTTAATTAATTATTTGGCTATTTAATTAATTAAATAAGGTTTAATTTAATTTAAATTAAACCAAACAATCGGTTTAATGAAACTGATTGGACACGTGTCCATCATGCACATGTGTTGGTCTTCCCCTTCCTAACCGATAGGCAACATGTCTGGAGTGGTTATTGTGCATCTCCCTAATTAGGCGTGGGCTTCAATTTTGCAGAGAGTGCTCTCATTCTGCAATTTTTCCTCCAGAAAATTCTCTCAAGAAAAATCACTTTCTCCCAAGAATTCCCTTAGAATTTTGGTACCCACTCCCATAACCTCAAGTTTCCTTGAGTCATACCGGTTGGATTTTGATGGTGGTGTCCTTGTGGTATTGGCGTGATTTGCAGAGAAGAGTACCTTCCAAGAGATTTGGCAAAAATTAGATGAGAGTCACAACGAGAGTAAGTACCCTCTGATCCTTTTCTTCTCTGGATCTAATATAGGATTAAATTCTAGATTTTATTTTTAAATAAAAGCATGCTTAGCCTTAAATTACAGTAGATTGATTTATTTATGTATGTCGTAATTTTGCCAACGTACGGTATTTTAATCCTAATTAAAAACAGAGTTGATGGTCTGATTTAATTACGCTGCGTAAGGACTTTTATCCCTGCATTATCATCTTCCCTAAATTCTTTTTCAATACCCATATCAGGAATGGAGTCAATATAATTCATGTCTAATTGGGTGAAGAAGGGAGGAATTTCATGCTCACCCATAGCTCAGGTAATTCCTCCAAATGTTAGGTATGCGGTTGAGAAATTGATTCGTTGGAAAGCACGGGCCAACAGGCACACAGTCAATATATTCGATCACGCAACGGGGATATGTGACATAACAACTCCAACGAACCTAATATCAATGAGGGGTGGAACTCGAAATCGAGTGAAGTTATGTGAGAGGACTTGTGTGTGCAATAAGTGGCGAGTGTATGGGATCCCATGTTCTCACGCCATTGCTGCCTACAAAAGCCTTGGTCTAGATTACTTGCACTTCATACAAGATTATTTCCAACTCCTAGCTTATTTGTTGTGTTATGCACCACAGTTTGAATCGATTCCTGATCAAAGTTGTTGGCTTGACCCAAATTTGCGAAAGGTTCTTCCAGATTAG

mRNA sequence

ATGGCAGCTTCGGCGATTTCCTGTGATTCCGACTGTGGGTTTTCTCCTTCAACAAGCTTTGGTGTTTATTATGCACCTACAGCAGCTCATTCAAGAGCTACACGAAGAAGTCCTAGAGCTAAAGCTAAGGGAAAGAAGGTTGCTCAAAGAGAAGAGATTGAAGAAGAGAAAATTGTGACTGAGGAACAAGAAGAAGAAGCTCAAATTCCAACTCCACAAAGCCCTCTTGCAAAGAAGAAGAATTCCAAAAAGAAAGGAAAGGAGTCTATGCTAACAGTGAGTGAAAGTCCAAGGGAGAAATTCATCAATGTTGCTGCTAAAGCAAAATTTGAAGAGCTGAAAGAGAGGGAGCTTCTTCCGGAGAGAGGCTTTGAATCAGACATGAAAAATCAACGAATGCTACAACTTGCCAGGACTATCCTCAAGCTATCTTTAACTCAATGGAGATTGCCCCATCAAACGAGTAGGCTCCAATTAGCCTTAGTAACATGTGGAGTTGAAGGAGCAAGATGGAAAATGTCCAGAAATTCCAATAGGACACTTTTGACCGCTTATATGAAGCCTGAAGCTAACGTGTGGTTGACATTTGTGAGAAACAGGCTGCTACCAACTACTCATGACACTACAGTTCAAGTTGAAAAGGATGAGGAGGTTTTGATGGATAACGGCATTATAGACTCGACGTCTTTAGCAAGACTTCAAGGAGCAAGTAAGGGGAGAAAGAGCACCAATAATATAGTCTGTGGAATTCATGAACTTTTGAAACAACCAAGAAGAATGATGCAACACATGGAGCATAATGAAGTTCAACAGAAGCTATACTGGGAATACGCTCATCAGAGGGACTATGCTATGGAAAAGGCGTTTGAATTTGGCTCTGAGGAACTTCCTCAACCTTTCTCTCAATTCCCTGAAGGTGTGCTCAACCCGTGGTGCCCATCCTCATCTATGGAGAAGATGATGATGCTGCTGAAGGTCAAGAAGATTGAAGAAGGAAAAGAAGGGAGTCTGTTGTTGTTGTTTGCTTGCTATCTTTATGGCCCTGCCCTCTCTATGGCACGAGAGGGATTTCTGTTTCTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTTGTACTTAGATGTAGAGGTAATTCCTCCAAATGTTAGGTATGCGGTTGAGAAATTGATTCGTTGGAAAGCACGGGCCAACAGGCACACAGTCAATATATTCGATCACGCAACGGGGATATGTGACATAACAACTCCAACGAACCTAATATCAATGAGGGGTGGAACTCGAAATCGAGTGAAGTTATGTGAGAGGACTTGTGTGTGCAATAAGTGGCGAGTGTATGGGATCCCATGTTCTCACGCCATTGCTGCCTACAAAAGCCTTGGTCTAGATTACTTGCACTTCATACAAGATTATTTCCAACTCCTAGCTTATTTGTTGTGTTATGCACCACAGTTTGAATCGATTCCTGATCAAAGTTGTTGGCTTGACCCAAATTTGCGAAAGGTTCTTCCAGATTAG

Coding sequence (CDS)

ATGGCAGCTTCGGCGATTTCCTGTGATTCCGACTGTGGGTTTTCTCCTTCAACAAGCTTTGGTGTTTATTATGCACCTACAGCAGCTCATTCAAGAGCTACACGAAGAAGTCCTAGAGCTAAAGCTAAGGGAAAGAAGGTTGCTCAAAGAGAAGAGATTGAAGAAGAGAAAATTGTGACTGAGGAACAAGAAGAAGAAGCTCAAATTCCAACTCCACAAAGCCCTCTTGCAAAGAAGAAGAATTCCAAAAAGAAAGGAAAGGAGTCTATGCTAACAGTGAGTGAAAGTCCAAGGGAGAAATTCATCAATGTTGCTGCTAAAGCAAAATTTGAAGAGCTGAAAGAGAGGGAGCTTCTTCCGGAGAGAGGCTTTGAATCAGACATGAAAAATCAACGAATGCTACAACTTGCCAGGACTATCCTCAAGCTATCTTTAACTCAATGGAGATTGCCCCATCAAACGAGTAGGCTCCAATTAGCCTTAGTAACATGTGGAGTTGAAGGAGCAAGATGGAAAATGTCCAGAAATTCCAATAGGACACTTTTGACCGCTTATATGAAGCCTGAAGCTAACGTGTGGTTGACATTTGTGAGAAACAGGCTGCTACCAACTACTCATGACACTACAGTTCAAGTTGAAAAGGATGAGGAGGTTTTGATGGATAACGGCATTATAGACTCGACGTCTTTAGCAAGACTTCAAGGAGCAAGTAAGGGGAGAAAGAGCACCAATAATATAGTCTGTGGAATTCATGAACTTTTGAAACAACCAAGAAGAATGATGCAACACATGGAGCATAATGAAGTTCAACAGAAGCTATACTGGGAATACGCTCATCAGAGGGACTATGCTATGGAAAAGGCGTTTGAATTTGGCTCTGAGGAACTTCCTCAACCTTTCTCTCAATTCCCTGAAGGTGTGCTCAACCCGTGGTGCCCATCCTCATCTATGGAGAAGATGATGATGCTGCTGAAGGTCAAGAAGATTGAAGAAGGAAAAGAAGGGAGTCTGTTGTTGTTGTTTGCTTGCTATCTTTATGGCCCTGCCCTCTCTATGGCACGAGAGGGATTTCTGTTTCTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTTGTACTTAGATGTAGAGGTAATTCCTCCAAATGTTAGGTATGCGGTTGAGAAATTGATTCGTTGGAAAGCACGGGCCAACAGGCACACAGTCAATATATTCGATCACGCAACGGGGATATGTGACATAACAACTCCAACGAACCTAATATCAATGAGGGGTGGAACTCGAAATCGAGTGAAGTTATGTGAGAGGACTTGTGTGTGCAATAAGTGGCGAGTGTATGGGATCCCATGTTCTCACGCCATTGCTGCCTACAAAAGCCTTGGTCTAGATTACTTGCACTTCATACAAGATTATTTCCAACTCCTAGCTTATTTGTTGTGTTATGCACCACAGTTTGAATCGATTCCTGATCAAAGTTGTTGGCTTGACCCAAATTTGCGAAAGGTTCTTCCAGATTAG

Protein sequence

MAASAISCDSDCGFSPSTSFGVYYAPTAAHSRATRRSPRAKAKGKKVAQREEIEEEKIVTEEQEEEAQIPTPQSPLAKKKNSKKKGKESMLTVSESPREKFINVAAKAKFEELKERELLPERGFESDMKNQRMLQLARTILKLSLTQWRLPHQTSRLQLALVTCGVEGARWKMSRNSNRTLLTAYMKPEANVWLTFVRNRLLPTTHDTTVQVEKDEEVLMDNGIIDSTSLARLQGASKGRKSTNNIVCGIHELLKQPRRMMQHMEHNEVQQKLYWEYAHQRDYAMEKAFEFGSEELPQPFSQFPEGVLNPWCPSSSMEKMMMLLKVKKIEEGKEGSLLLLFACYLYGPALSMAREGFLFLVGPQTGCSLEEHLYLDVEVIPPNVRYAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRNRVKLCERTCVCNKWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDPNLRKVLPD
Homology
[Close]
BLAST of Spg027102 vs. NCBI nr
Match: KAA0047926.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 5.8e-22
Identity = 48/124 (38.71%), Postives = 82/124 (66.13%), Query Frame = 0 

Query: 386 YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRNRVKL--CERTCVCNK 445
           YA+EK+++W AR+++H V  +D + G+  + T  + ++ RGG    +KL   ER C CNK
Sbjct: 283 YALEKILKWSARSSKHEVQSYDRSEGMFHVKTGHHELNSRGGNIQMLKLNASERYCSCNK 342

Query: 446 WRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDP-NLRK 505
           W+ +GIPCSH +A      ++Y  F++DY+++  Y+ CYAPQF+ +P ++ W+ P ++  
Sbjct: 343 WQAFGIPCSHFMAVCSWFNMNYEDFVEDYYKISTYVACYAPQFQPVPHENYWISPTSMLV 402

Query: 506 VLPD 507
           +LPD
Sbjct: 403 LLPD 406

[Close]
BLAST of Spg027102 vs. NCBI nr
Match: XP_008457265.1 (PREDICTED: uncharacterized protein LOC103496991 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-21
Identity = 46/122 (37.70%), Postives = 76/122 (62.30%), Query Frame = 0 

Query: 385 RYAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCN 444
           RYA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CN
Sbjct: 275 RYALEKILKWSVRSSKHEVQSYDRSEGIFHVKTGRHELNSKEGNIQILRLSASERYCSCN 334

Query: 445 KWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDPNLRK 504
           KW+ +GIPCSH +A      ++Y  F++DY+++L Y+ CYAPQF+ +P +  W+ P    
Sbjct: 335 KWQAFGIPCSHFMAVCSRFNMNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMP 394

[Close]
BLAST of Spg027102 vs. NCBI nr
Match: KAA0039601.1 (uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 8.4e-21
Identity = 45/121 (37.19%), Postives = 75/121 (61.98%), Query Frame = 0 

Query: 386 YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNK 445
           YA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CNK
Sbjct: 339 YALEKILKWSVRSSKHEVQSYDRSEGIFHVKTGRHELNSKEGNIQILRLSASERYCSCNK 398

Query: 446 WRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDPNLRKV 505
           W+ +GIPCSH +A      ++Y  F++DY+++L Y+ CYAPQF+ +P +  W+ P    V
Sbjct: 399 WQAFGIPCSHFMAVCSRFNMNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPV 458

[Close]
BLAST of Spg027102 vs. NCBI nr
Match: TYK01705.1 (uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 8.4e-21
Identity = 45/121 (37.19%), Postives = 75/121 (61.98%), Query Frame = 0 

Query: 386 YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNK 445
           YA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CNK
Sbjct: 251 YALEKILKWSVRSSKHEVQSYDRSEGIFHVKTGRHELNSKEGNIQILRLSASERYCSCNK 310

Query: 446 WRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDPNLRKV 505
           W+ +GIPCSH +A      ++Y  F++DY+++L Y+ CYAPQF+ +P +  W+ P    V
Sbjct: 311 WQAFGIPCSHFMAVCSRFNMNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPV 370

[Close]
BLAST of Spg027102 vs. NCBI nr
Match: RVX19406.1 (hypothetical protein CK203_008540 [Vitis vinifera])

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-20
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 0 

Query: 386 YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISM-RGGTRNRVKLCERTCVCNKW 445
           YA+ K+ ++++RAN HT NIF  +  I ++TT  +   M +G     VKL ERTC CNKW
Sbjct: 592 YAINKITKYQSRANGHTANIFHRSNEIFEVTTAPHGFHMDKGNNIQIVKLKERTCTCNKW 651

Query: 446 RVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDPNLRKVL 505
           + +GIPCSH +A      +D   F+  ++++  Y  CY PQF  IP Q+ W +PN   V 
Sbjct: 652 QSFGIPCSHVLAVCARARIDSWQFVDKHYRMEVYACCYTPQFNPIPHQAYWPEPNFPIVH 711

Query: 506 PD 507
           P+
Sbjct: 712 PN 713

[Close]
BLAST of Spg027102 vs. ExPASy TrEMBL
Match: A0A5A7U115 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold199G00010 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-22
Identity = 48/124 (38.71%), Postives = 82/124 (66.13%), Query Frame = 0 

Query: 386 YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRNRVKL--CERTCVCNK 445
           YA+EK+++W AR+++H V  +D + G+  + T  + ++ RGG    +KL   ER C CNK
Sbjct: 283 YALEKILKWSARSSKHEVQSYDRSEGMFHVKTGHHELNSRGGNIQMLKLNASERYCSCNK 342

Query: 446 WRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDP-NLRK 505
           W+ +GIPCSH +A      ++Y  F++DY+++  Y+ CYAPQF+ +P ++ W+ P ++  
Sbjct: 343 WQAFGIPCSHFMAVCSWFNMNYEDFVEDYYKISTYVACYAPQFQPVPHENYWISPTSMLV 402

Query: 506 VLPD 507
           +LPD
Sbjct: 403 LLPD 406

[Close]
BLAST of Spg027102 vs. ExPASy TrEMBL
Match: A0A1S3C4P2 (uncharacterized protein LOC103496991 OS=Cucumis melo OX=3656 GN=LOC103496991 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-21
Identity = 46/122 (37.70%), Postives = 76/122 (62.30%), Query Frame = 0 

Query: 385 RYAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCN 444
           RYA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CN
Sbjct: 275 RYALEKILKWSVRSSKHEVQSYDRSEGIFHVKTGRHELNSKEGNIQILRLSASERYCSCN 334

Query: 445 KWRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDPNLRK 504
           KW+ +GIPCSH +A      ++Y  F++DY+++L Y+ CYAPQF+ +P +  W+ P    
Sbjct: 335 KWQAFGIPCSHFMAVCSRFNMNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMP 394

[Close]
BLAST of Spg027102 vs. ExPASy TrEMBL
Match: A0A5D3BR89 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00280 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.1e-21
Identity = 45/121 (37.19%), Postives = 75/121 (61.98%), Query Frame = 0 

Query: 386 YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNK 445
           YA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CNK
Sbjct: 251 YALEKILKWSVRSSKHEVQSYDRSEGIFHVKTGRHELNSKEGNIQILRLSASERYCSCNK 310

Query: 446 WRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDPNLRKV 505
           W+ +GIPCSH +A      ++Y  F++DY+++L Y+ CYAPQF+ +P +  W+ P    V
Sbjct: 311 WQAFGIPCSHFMAVCSRFNMNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPV 370

[Close]
BLAST of Spg027102 vs. ExPASy TrEMBL
Match: A0A5A7TD93 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00780 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.1e-21
Identity = 45/121 (37.19%), Postives = 75/121 (61.98%), Query Frame = 0 

Query: 386 YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISMRGGTRN--RVKLCERTCVCNK 445
           YA+EK+++W  R+++H V  +D + GI  + T  + ++ + G     R+   ER C CNK
Sbjct: 339 YALEKILKWSVRSSKHEVQSYDRSEGIFHVKTGRHELNSKEGNIQILRLSASERYCSCNK 398

Query: 446 WRVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDPNLRKV 505
           W+ +GIPCSH +A      ++Y  F++DY+++L Y+ CYAPQF+ +P +  W+ P    V
Sbjct: 399 WQAFGIPCSHFMAVCSRFNMNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPV 458

[Close]
BLAST of Spg027102 vs. ExPASy TrEMBL
Match: A0A438KDW5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_008540 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-20
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 0 

Query: 386 YAVEKLIRWKARANRHTVNIFDHATGICDITTPTNLISM-RGGTRNRVKLCERTCVCNKW 445
           YA+ K+ ++++RAN HT NIF  +  I ++TT  +   M +G     VKL ERTC CNKW
Sbjct: 592 YAINKITKYQSRANGHTANIFHRSNEIFEVTTAPHGFHMDKGNNIQIVKLKERTCTCNKW 651

Query: 446 RVYGIPCSHAIAAYKSLGLDYLHFIQDYFQLLAYLLCYAPQFESIPDQSCWLDPNLRKVL 505
           + +GIPCSH +A      +D   F+  ++++  Y  CY PQF  IP Q+ W +PN   V 
Sbjct: 652 QSFGIPCSHVLAVCARARIDSWQFVDKHYRMEVYACCYTPQFNPIPHQAYWPEPNFPIVH 711

Query: 506 PD 507
           P+
Sbjct: 712 PN 713

The following BLAST results are available for this feature:
BLAST of Spg027102 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047926.15.8e-2238.71mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
XP_008457265.12.2e-2137.70PREDICTED: uncharacterized protein LOC103496991 [Cucumis melo][more]
KAA0039601.18.4e-2137.19uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa][more]
TYK01705.18.4e-2137.19uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa][more]
RVX19406.13.2e-2040.98hypothetical protein CK203_008540 [Vitis vinifera][more]
BLAST of Spg027102 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027102 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1152.8e-2238.71Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A1S3C4P21.1e-2137.70uncharacterized protein LOC103496991 OS=Cucumis melo OX=3656 GN=LOC103496991 PE=... [more]
A0A5D3BR894.1e-2137.19SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TD934.1e-2137.19SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A438KDW51.5e-2040.98SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_008540 P... [more]
BLAST of Spg027102 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 46..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..93
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 437..464
e-value: 4.1E-9
score: 46.3
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 428..460
e-value: 1.5E-6
score: 27.8
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 430..462
score: 9.346741

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027102.1Spg027102.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding