Spg027034 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg027034
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold8: 9159003 .. 9162213 (-)
RNA-Seq Expression	Spg027034
Synteny	Spg027034

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAGTCTTACACGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCGGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACTCCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTATAGTGCAAGATGATCAGCCACAGTGTTCTACTTCGATCGCTTCATTATCCATCCAACAGCTCCAGGATATGATCACAATCTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCGAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAACAATTCGTTCGAACACTTAAAGGAAATGCGTTTGACTGGTACACTGATCTAGAACTTGAGTCGATAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTATAGCACCAGACAAACTGTTAGCATGTTCGAGCTCACCAACACAAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACCGAACTCTCTTCTGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAGCCTCGCAGCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACATGAGGAAAGAAGGAAGGAACGACGAAGAGACTGTAGAAGAATCTATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAACGACAAATAAATGGAACGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTACTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAGACTAGCTAAGGAAGAAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCAGACTACAGTCAAAGGAAATGATAGACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAAAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAACTTTGCAACTTCCTACTACGTTGACGTAGAAGAGGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTTTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAGGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAAAAGCGAAAAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGAGCTTTAAAAATGTAAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTAAAAACAAAAAAAAAGGTGCATGACAATACAAATTGAAGAAATTCTTTAGTACTGGGGGCAATACAACAAATTGAAGTTGTACACCGTTATAAATATGAAGCTACGAGTTGGACGAATAAAAGAAGATTTCATTCCTCCAAATTCAACGTTTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGTTCCCGCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAGGGTTCTCACGCGTTTCGTTGCAGTTCATTCTCTCAAGTTCGAAGGTTCTCACGCATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTGACACACTTCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCCTCTCCCCAAGTTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTGCGCTGTTCCTTCACCAAGTTCGAAGGTTCACACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCTAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCACCAAGTTCGAAGATTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAGTTCGAAGGTTCACACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAA

mRNA sequence

ATGAACAAGTCTTACACGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCGGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACTCCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGAAAAAGAGAACTTTGCAACTTCCTACTACGTTGACGTAGAAGAGGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTTTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAGGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAAAAGCGAAAAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTGCGCTGTTCCTTCACCAAGTTCGAAGGTTCACACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCTAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCACCAAGTTCGAAGATTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAGTTCGAAGGTTCACACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAA

Coding sequence (CDS)

ATGAACAAGTCTTACACGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCGGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACTCCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGAAAAAGAGAACTTTGCAACTTCCTACTACGTTGACGTAGAAGAGGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTTTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAGGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAAAAGCGAAAAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTGCGCTGTTCCTTCACCAAGTTCGAAGGTTCACACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCTAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCACCAAGTTCGAAGATTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAGTTCGAAGGTTCACACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAA

Protein sequence

MNKSYTSSTAHCCFNELTLQEDKTSIVAGQETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESSQTQEKENFATSYYVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQRLSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFSVLINTEGSLKFLLPKFEGPYTVRYCVVPSPSSKVLSCTTAALFLHQVRRFTRCAASFTKFEGSDVALLPSLSLKVPTLRCCAASFTKFEGSHAALFRCSFSKFEDSHALRCSSFSSSSKVHTLRCFFTKFEDSHVALFLHQIRRLSRCAVSFSKFEGSHAALLPSPSSKVLTLHCFLL

Homology

[Close]

BLAST of Spg027034 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 6.1e-33
Identity = 86/136 (63.24%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 122 YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQR 181
           Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +EENQC TST+ R SAF+R
Sbjct: 116 YDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKR 175

Query: 182 LSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFS 241
           LS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E   + K+ S +PSRMKRK S
Sbjct: 176 LSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLS 235

Query: 242 VLINTEGSLKFLLPKF 258
           V INTEGSL  + P+F
Sbjct: 236 VDINTEGSLT-VKPRF 250

[Close]

BLAST of Spg027034 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 3.9e-32
Identity = 84/136 (61.76%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 122 YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQR 181
           Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQC TST+ R SAF+R
Sbjct: 533 YDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKR 592

Query: 182 LSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFS 241
           LS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E   + K+ + +PSRMKRK S
Sbjct: 593 LSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLS 652

Query: 242 VLINTEGSLKFLLPKF 258
           V INTEGSL  + P+F
Sbjct: 653 VDINTEGSLT-VKPRF 667

[Close]

BLAST of Spg027034 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 3.9e-32
Identity = 84/136 (61.76%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 122 YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQR 181
           Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQC TST+ R SAF+R
Sbjct: 533 YDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKR 592

Query: 182 LSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFS 241
           LS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E   + K+ + +PSRMKRK S
Sbjct: 593 LSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLS 652

Query: 242 VLINTEGSLKFLLPKF 258
           V INTEGSL  + P+F
Sbjct: 653 VDINTEGSLT-VKPRF 667

[Close]

BLAST of Spg027034 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 3.9e-32
Identity = 84/136 (61.76%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 122 YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQR 181
           Y   EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  +EENQC TST+ R SAF+R
Sbjct: 57  YDSYEEVDNSNEIKQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKR 116

Query: 182 LSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFS 241
           LS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E   + K+ S +PSRMKRK S
Sbjct: 117 LSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLS 176

Query: 242 VLINTEGSLKFLLPKF 258
           V INTEGSL  + P+F
Sbjct: 177 VDINTEGSLT-VKPRF 191

[Close]

BLAST of Spg027034 vs. NCBI nr
Match: KAA0052018.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 6.7e-32
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 122 YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQR 181
           Y   EE+DNS + +QRTSVFDRIKP TTR SVFQR+SMA  KEENQC TST+ R SAF+R
Sbjct: 470 YDSYEEMDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKKEENQCPTSTYARTSAFKR 529

Query: 182 LSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFS 241
           LS+STSKK +PSTS FDRLK+T+DQ + +M  L+ K F E   + K+ S +PS MKRK S
Sbjct: 530 LSISTSKKHRPSTSAFDRLKMTNDQQQREMKTLKAKPFHEENDDDKIHSRVPSHMKRKLS 589

Query: 242 VLINTEGSLKFLLPKF 258
           V INT+GSL  + P+F
Sbjct: 590 VDINTKGSLT-VKPRF 604

[Close]

BLAST of Spg027034 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.9e-33
Identity = 86/136 (63.24%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 122 YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQR 181
           Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +EENQC TST+ R SAF+R
Sbjct: 116 YDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKR 175

Query: 182 LSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFS 241
           LS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E   + K+ S +PSRMKRK S
Sbjct: 176 LSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLS 235

Query: 242 VLINTEGSLKFLLPKF 258
           V INTEGSL  + P+F
Sbjct: 236 VDINTEGSLT-VKPRF 250

[Close]

BLAST of Spg027034 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-32
Identity = 84/136 (61.76%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 122 YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQR 181
           Y   EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  +EENQC TST+ R SAF+R
Sbjct: 57  YDSYEEVDNSNEIKQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKR 116

Query: 182 LSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFS 241
           LS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E   + K+ S +PSRMKRK S
Sbjct: 117 LSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLS 176

Query: 242 VLINTEGSLKFLLPKF 258
           V INTEGSL  + P+F
Sbjct: 177 VDINTEGSLT-VKPRF 191

[Close]

BLAST of Spg027034 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-32
Identity = 84/136 (61.76%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 122 YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQR 181
           Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQC TST+ R SAF+R
Sbjct: 533 YDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKR 592

Query: 182 LSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFS 241
           LS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E   + K+ + +PSRMKRK S
Sbjct: 593 LSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLS 652

Query: 242 VLINTEGSLKFLLPKF 258
           V INTEGSL  + P+F
Sbjct: 653 VDINTEGSLT-VKPRF 667

[Close]

BLAST of Spg027034 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-32
Identity = 84/136 (61.76%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 122 YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQR 181
           Y   EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQC TST+ R SAF+R
Sbjct: 533 YDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKR 592

Query: 182 LSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFS 241
           LS+STSKK +PSTS FDRLK+T+DQ + +M +L+ K F E   + K+ + +PSRMKRK S
Sbjct: 593 LSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLS 652

Query: 242 VLINTEGSLKFLLPKF 258
           V INTEGSL  + P+F
Sbjct: 653 VDINTEGSLT-VKPRF 667

[Close]

BLAST of Spg027034 vs. ExPASy TrEMBL
Match: A0A5A7U9V3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G005100 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.3e-32
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 122 YVDVEEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCSTSTFTRPSAFQR 181
           Y   EE+DNS + +QRTSVFDRIKP TTR SVFQR+SMA  KEENQC TST+ R SAF+R
Sbjct: 470 YDSYEEMDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKKEENQCPTSTYARTSAFKR 529

Query: 182 LSVSTSKKSQPSTSFFDRLKVTSDQPKGKMDNLEVKLFDEVKSEKKLQSSIPSRMKRKFS 241
           LS+STSKK +PSTS FDRLK+T+DQ + +M  L+ K F E   + K+ S +PS MKRK S
Sbjct: 530 LSISTSKKHRPSTSAFDRLKMTNDQQQREMKTLKAKPFHEENDDDKIHSRVPSHMKRKLS 589

Query: 242 VLINTEGSLKFLLPKF 258
           V INT+GSL  + P+F
Sbjct: 590 VDINTKGSLT-VKPRF 604

The following BLAST results are available for this feature:

BLAST of Spg027034 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	6.1e-33	63.24	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK08944.1	3.9e-32	61.76	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0055462.1	3.9e-32	61.76	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0050734.1	3.9e-32	61.76	gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol...	[more]
KAA0052018.1	6.7e-32	61.76	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg027034 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg027034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ06	2.9e-33	63.24	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3BBF9	1.9e-32	61.76	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7UI09	1.9e-32	61.76	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CCI8	1.9e-32	61.76	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7U9V3	3.3e-32	61.76	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Spg027034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 65..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg027034.1	Spg027034.1	mRNA