Spg026891 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg026891
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold13: 26314490 .. 26319100 (-)
RNA-Seq ExpressionSpg026891
SyntenySpg026891
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGGAAAAGGGAAAAAGGAAAAAAAAAAAAGAGAAAAAAAGGAAAGGAAAAGAAAGCAAGTGGAAATGGACAGCAATGCCCCACCACCGCCTAAGCTGATCACCAACCTATTTTTAGTCATTTTCAGCCCCATTTCCTCATCATTTTTCATCCAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTTGGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGACATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGATTTGAATTTCGTGAAAGTTAGTTCATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGATTTTTGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTGTTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGCAGATGTCGTGAGCCAAAAATGACTTTAAGTAGGGTCAATTTCAGGAGTTAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTTAGGTAAGTTGTAGAGTGTTCGGAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGGTTCTTAATTCAAGTGTCTAGAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCAGTTTTGGTTATTTGACAGACCAAGAGGAAATAGGTCGAGTCTACTGTCGCAACGTCATTGCGACGCGGAGCGGCCGACGTCCTTTCCTAAGGGTCTCTTTCGAGGTGAGAGGTTTGGAGTCGCCACCAATCATCTTGGGGTGTGATTGGTCACCCATTTTAAAGAAAAAATGGTCTTTGAAAACCAAAAATTAGGTTCGGGGGTCAGTTGTGTGTAGGGAAGGTGTTAGCACCCTACAACACCCGTTTGAAAACATTTTATTTTATTACTCGAATTCATTAAACAAAAGGTCCGTGTCTTAATGAAAATAGACAAATAAAATTTGAAAAAAAAAAAATTGTCTCACTAATTTCACCTTATCTTTAAATAAAGTAAGGATTTAATTTTGTGAGTGGGGCTAACCCATGACTTTATTATCATGTAGAAATTTCCTAATTAAAGAAAATCTTTCACCTCAAGAATTTGAAAATTATTTCAACTCCGTCATAGGCTCTACATAAATTATTTTGTATCATATTTATTAATTTACATTTCAACGACAAAAATGTAAACTAACAATGATGAATGGTAAAAAACCATTTAAGAAGAAGAAGGAAAAAATTGATTTAATACTTTGAAGGCTTTTTGAAAATTTAATTTAAAACCAAACAAAATTGACCTCCAATTCAAATTTTCAAATCAAACTCAATTTGGCTTTAATAGATGAAATCCAATATTGAAAGGAAAAAAAAAATTGAATATGAAATTAATTTTAAAGTAAGTTGAAGTTAATTTCAAAACAAAACCTTAGGCTAATTTTAAAACTTCAGGCCAAAAATTTCAATAATCAATGCTCTTTCTTTTCTCTCTTTCCATTTTATTTACTCTAAAATCAATTTGAAACTTGTTTGGAAAATGAAGGGAAATTGAAATCCAATTTGAAAACATCAAATTAAATCATCAAAGGAAAAACAAAATTGAAATTTTATTTAGAAATTTCAAATTAGAACAAAACTACATCCAATTAGAGACTTTAATTTAGAAAAGAAAGAACAAGGAAAGGGAAAATAATAATAATAAATAAATAAATGAAATAAAATAAATTGCAATTGATTTGGAAACTCAAATTCATGGCCAAAATGAAAAATAGAAAAGTTTGGATACATAAAAAAAAAAAAAGAAAAAAAAAGTTTCTTTTCTTGTTTTATGAGGAATAATAATAATGGTAATAATAATAATAATAAGACAAATAATAAGAGAGAGAAGTGGAAAGACAAAAGAATTTAAAATGTGGGACCCACCTTGTTCACTTTCCTCTTTCTTCTTTCCCAACTTCCCTCCCTCTCTTTTTCTTTTTTCTCTTCCACTTTCCCTCCCCTTTTCCACTTAGCCCTCACTTAGGAGCTTTGTTGGAATCAACGGAAAGCGGCGGCACGGTGGCGGCACGATGGCGGCGGCGGTACGGCGGTGAGTGGCGGCGGTAGCTTTGGTTTTTTGAAAATCCTTCTCCAAACTCTATTTTTTTCTCTCAAACTCACTTTCTCTCTCTAAGCTCTTTCACTATTCTTCTCCTTTTTTGTGTGTCCTTCTTTTTCCTTGCTTGTTTTGTGTCTTTGTTGTTGTCTTCCTCCATCTCCCCCCTCCCTTTTATACTAAAAGACCTTGCTAATTTGGGGTGGAAAGAGTGGGAGTTGGAGAAGAGAATGGGAGAGGGAGAAAGAATAGGGGAGAGAGAAAGAATAGGGGAGAGGGAGAAAGAATAGGAGAGGGAAACGTGGGGGAAGAAGAGAAAAAAAATAATAAATAAATAAAAATAATAATAAACAATAAATAAGTAATAAATAAATACATAAAATAAATAATAAATACATAAATAAATAAAATAAATAATAAAATAAAAATAGAATGAAAATAAAATATAAAGTAAATAAAAATAAAACAAAACAAAATAAAAATAAAACATAATAAATAAATAAATAAATATAATAATAATAATAAAACGAAATAAAGAAATAAAATTAAATTAAATAAATAAAATTAAATGAAATAAAATAAAATAAATAAAAAATAAAAGATAAGGAAATAAATAAAAAAGAAAGTAAAATGAAAATGAAAATAAACAATGAAAAAAAAAAAAAAATTTGATAATATGTGGGAAAGGGGATTCGAACCATAGACCTCATGGTTATCAATACAATTTTATGCCAGTTGAGCTATACTCTTGTTGGCATACCAAAAAACAAAGTGCAACCAAATATTGAAAAACTTCAAACATTATTACTAAAAATCAAGCCGGACCAAATACGGTGTCTACATCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGGTTTCCAACGGTTGTTCATGTTTAGATGTTTACATGTTTTTCTATGAATGATACATGGGTTTTATGAACAGTTTCAAGCATGAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGACTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGAATTAGCAAGTACTTTTAAACGATTTTCAGTTTTTCACGAGCAAACTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATTTGATTTCCTGAGATTTCTATTGACTACATGACTGAGATATTGAGTCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAAACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAAATCGGTCATGCTAGTTAAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTTAATGACGAACTTACGAGATGTTTTGGAAAGCCTTTATTATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTCCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCTAGTACGTGGGTAGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGAGTGGTTAATATAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTTGGTTGTGACATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTTGCTGGAAGTTTCTTTTCAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATTAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTTACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATGTGCATTTCTTCAGCAAATCCTCCTCTATTTAAAGAGGAATCCTTTCACTCTTGAAGCCCCACAATTAGACAACAAGACAATCCCAATTAGAGTGGGATTTGGTCGCTAA

mRNA sequence

ATGCAAAGCCAGACATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGACCAAGAGGAAATAGGTCGAGTCTACTGTCGCAACGTCATTGCGACGCGGAGCGGCCGACGTCCTTTCCTAAGGGTCTCTTTCGAGGTGAGAGGTTTGGAGTCGCCACCAATCATCTTGGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCTAGTACGTGGGTAGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTTACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATGTGCATTTCTTCAGCAAATCCTCCTCTATTTAAAGAGGAATCCTTTCACTCTTGAAGCCCCACAATTAGACAACAAGACAATCCCAATTAGAGTGGGATTTGGTCGCTAA

Coding sequence (CDS)

ATGCAAAGCCAGACATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGACCAAGAGGAAATAGGTCGAGTCTACTGTCGCAACGTCATTGCGACGCGGAGCGGCCGACGTCCTTTCCTAAGGGTCTCTTTCGAGGTGAGAGGTTTGGAGTCGCCACCAATCATCTTGGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCTAGTACGTGGGTAGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTTACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATGTGCATTTCTTCAGCAAATCCTCCTCTATTTAAAGAGGAATCCTTTCACTCTTGAAGCCCCACAATTAGACAACAAGACAATCCCAATTAGAGTGGGATTTGGTCGCTAA

Protein sequence

MQSQTLQNLGAKLSTSGFLFGLSYTEGTKRPRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGVTCAFLQQILLYLKRNPFTLEAPQLDNKTIPIRVGFGR
Homology
[Close]
BLAST of Spg026891 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 6.9e-26
Identity = 77/157 (49.04%), Postives = 96/157 (61.15%), Query Frame = 0 

Query: 1   MQSQTLQNLGAKLSTSGFLFGLSYTEGTKRPRGNRSSLLSQRHCDAERPTSFPKGLFRGE 60
           MQSQ LQNLGA ++    LFGL Y EGTKRPRGNR+SL +    + ++   F        
Sbjct: 1   MQSQPLQNLGATVNLWFVLFGLGYPEGTKRPRGNRTSLQTG---ELDKTVIFSLSTLSVL 60

Query: 61  RFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VN 120
           R     N   VEIELPVPDTLPTSAESS ++SSTW+EL  E VH+             ++
Sbjct: 61  R----DNDAVVEIELPVPDTLPTSAESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLH 120

Query: 121 VLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGV 145
           ++FNV  G    +  D+V WL+A+F AK AGGPGGGV
Sbjct: 121 LVFNVSVGSTRIVRGDNVCWLHAVFWAKTAGGPGGGV 150

[Close]
BLAST of Spg026891 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-21
Identity = 77/196 (39.29%), Postives = 95/196 (48.47%), Query Frame = 0 

Query: 1   MQSQTLQNLGAKLSTSGFLFGLSYTEGTK------RPRG---------------NRSSLL 60
           MQSQ LQNLGA ++    LF LSY EGTK      +P G               +   L 
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVFSDALSILEIHKSNQKLY 60

Query: 61  SQRHCDAERPTSFPKGLFRGERFGVATNHL-----------------GVEIELPVPDTLP 120
                      +   G+ RG R  + T  L                  V IELPVPD LP
Sbjct: 61  LVLEVRISNLENLKSGMPRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILP 120

Query: 121 TSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLY 146
           TSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WL+
Sbjct: 121 TSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLH 180

[Close]
BLAST of Spg026891 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-21
Identity = 78/190 (41.05%), Postives = 98/190 (51.58%), Query Frame = 0 

Query: 1   MQSQTLQNLGAKLSTSGFLFGLSYTEGTKR------------------------------ 60
           MQSQ LQNLGA ++    LF LSY EGTK                               
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLY 60

Query: 61  --PRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESS 120
             PRGNR SL +    + ++       +F      V  ++  V IELPVPDTLPTSAESS
Sbjct: 61  LGPRGNRLSLQTG---ELDKTV-----IFSLSTLSVLRDNNAV-IELPVPDTLPTSAESS 120

Query: 121 RTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAK 146
            ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WL+A+FRAK
Sbjct: 121 GSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAK 180

[Close]
BLAST of Spg026891 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-18
Identity = 62/127 (48.82%), Postives = 76/127 (59.84%), Query Frame = 0 

Query: 32  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTS 91
           RGNRSSL S    + +    FP       R     N   VEIELPVPDTLPTSAESS ++
Sbjct: 62  RGNRSSLQSG---ELDTTVIFPLSTLSVLR----DNDAVVEIELPVPDTLPTSAESSESN 121

Query: 92  SSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAG 146
           SSTW+ELY ESVH+             ++++F+V  G    +  DDV WL+A+FRAK  G
Sbjct: 122 SSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVG 181

[Close]
BLAST of Spg026891 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-18
Identity = 62/127 (48.82%), Postives = 76/127 (59.84%), Query Frame = 0 

Query: 32  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTS 91
           RGNRSSL S    + +    FP       R     N   VEIELPVPDTLPTSAESS ++
Sbjct: 62  RGNRSSLQSG---ELDTTVIFPLSTLSVLR----DNDAVVEIELPVPDTLPTSAESSESN 121

Query: 92  SSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAG 146
           SSTW+ELY ESVH+             ++++F+V  G    +  DDV WL+A+FRAK  G
Sbjct: 122 SSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVG 181

[Close]
BLAST of Spg026891 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.3e-26
Identity = 77/157 (49.04%), Postives = 96/157 (61.15%), Query Frame = 0 

Query: 1   MQSQTLQNLGAKLSTSGFLFGLSYTEGTKRPRGNRSSLLSQRHCDAERPTSFPKGLFRGE 60
           MQSQ LQNLGA ++    LFGL Y EGTKRPRGNR+SL +    + ++   F        
Sbjct: 1   MQSQPLQNLGATVNLWFVLFGLGYPEGTKRPRGNRTSLQTG---ELDKTVIFSLSTLSVL 60

Query: 61  RFGVATNHLGVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VN 120
           R     N   VEIELPVPDTLPTSAESS ++SSTW+EL  E VH+             ++
Sbjct: 61  R----DNDAVVEIELPVPDTLPTSAESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLH 120

Query: 121 VLFNVQEGQRVSLEEDDVRWLYAIFRAKLAGGPGGGV 145
           ++FNV  G    +  D+V WL+A+F AK AGGPGGGV
Sbjct: 121 LVFNVSVGSTRIVRGDNVCWLHAVFWAKTAGGPGGGV 150

[Close]
BLAST of Spg026891 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.5e-22
Identity = 77/196 (39.29%), Postives = 95/196 (48.47%), Query Frame = 0 

Query: 1   MQSQTLQNLGAKLSTSGFLFGLSYTEGTK------RPRG---------------NRSSLL 60
           MQSQ LQNLGA ++    LF LSY EGTK      +P G               +   L 
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVFSDALSILEIHKSNQKLY 60

Query: 61  SQRHCDAERPTSFPKGLFRGERFGVATNHL-----------------GVEIELPVPDTLP 120
                      +   G+ RG R  + T  L                  V IELPVPD LP
Sbjct: 61  LVLEVRISNLENLKSGMPRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILP 120

Query: 121 TSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLY 146
           TSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WL+
Sbjct: 121 TSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLH 180

[Close]
BLAST of Spg026891 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.5e-22
Identity = 78/190 (41.05%), Postives = 98/190 (51.58%), Query Frame = 0 

Query: 1   MQSQTLQNLGAKLSTSGFLFGLSYTEGTKR------------------------------ 60
           MQSQ LQNLGA ++    LF LSY EGTK                               
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLY 60

Query: 61  --PRGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESS 120
             PRGNR SL +    + ++       +F      V  ++  V IELPVPDTLPTSAESS
Sbjct: 61  LGPRGNRLSLQTG---ELDKTV-----IFSLSTLSVLRDNNAV-IELPVPDTLPTSAESS 120

Query: 121 RTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAK 146
            ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WL+A+FRAK
Sbjct: 121 GSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAK 180

[Close]
BLAST of Spg026891 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.2e-19
Identity = 62/127 (48.82%), Postives = 76/127 (59.84%), Query Frame = 0 

Query: 32  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTS 91
           RGNRSSL S    + +    FP       R     N   VEIELPVPDTLPTSAESS ++
Sbjct: 62  RGNRSSLQSG---ELDTTVIFPLSTLSVLR----DNDAVVEIELPVPDTLPTSAESSESN 121

Query: 92  SSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAG 146
           SSTW+ELY ESVH+             ++++F+V  G    +  DDV WL+A+FRAK  G
Sbjct: 122 SSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVG 181

[Close]
BLAST of Spg026891 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.2e-19
Identity = 62/127 (48.82%), Postives = 76/127 (59.84%), Query Frame = 0 

Query: 32  RGNRSSLLSQRHCDAERPTSFPKGLFRGERFGVATNHLGVEIELPVPDTLPTSAESSRTS 91
           RGNRSSL S    + +    FP       R     N   VEIELPVPDTLPTSAESS ++
Sbjct: 62  RGNRSSLQSG---ELDTTVIFPLSTLSVLR----DNDAVVEIELPVPDTLPTSAESSESN 121

Query: 92  SSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLYAIFRAKLAG 146
           SSTW+ELY ESVH+             ++++F+V  G    +  DDV WL+A+FRAK  G
Sbjct: 122 SSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVG 181

The following BLAST results are available for this feature:
BLAST of Spg026891 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051980.16.9e-2649.04DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D... [more]
KAA0058280.11.4e-2139.29uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
TYK11835.11.8e-2141.05uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
KAA0062409.11.1e-1848.82reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26572.11.1e-1848.82putative Retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Spg026891 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg026891 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U9X43.3e-2649.04DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UT176.5e-2239.29CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3CJX38.5e-2241.05CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7V9N35.2e-1948.82Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY75.2e-1948.82Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
BLAST of Spg026891 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg026891.1Spg026891.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016779 nucleotidyltransferase activity