Spg026744 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg026744
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Girdin-like
Location	scaffold6: 19911584 .. 19912606 (+)
RNA-Seq Expression	Spg026744
Synteny	Spg026744

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGAAAGAGATTATGATATATTGGACAAGGAGAATAGAAGGTTGATTGAAGAGAATCATGCTCTGAGGAATGAAAATACTGCACTACGAAGGGCAACTCGTTCACAAGAGGACAGGATCAAAGACCTTTCAAGAGGCAAAGAGACTCTCTTAGAGTTAGTTGCGGAATTAAACGAAACCATCAACAAGCAGAAAACGCAACTTATCAAGTTTGAAGAAGCTAATACTGCTCTAAGGTGAACGCTGTACAATCTACGTGTGAATATGCAGGCTAAATCAAAAAAGTCTGAAGCTTTAAAAAGTTATGCAAGCTCATTAGAACGTCAGCTCCAAGCATTTCAGAGTGCAAGCGAACAATTGTCGCTAGAGAGAGGACAACTAGAAGAGAAATACTCCTCATTAAGGGGAGATTATGCCATTATGAGAGATGACATGCAAATAATTCTTGGGAAAGTAAATCGAACCATGAACACTATCAAGATCATGGCTAGGAGAGCTCGAGGATTTGCAGAATGGGCAAGGGATCTACGAGAGAGTACTTCACCTATGGCTTCTAATGCAGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACGTTGGGTACTTCGGTCATTTTCATTAAATGTTCCTTGTCTCCACATTTCCCAATTCCCCGATTGTTTATTTTGTAGATATATTCATTTTTTTCCTCAATAATAAAATTCCATTCATTTATGCATCTCATATTGTTCTTTCTTCTATTTCCTTTTTTACTTACTCTAAGACTTTTCTTTTAAAAATAAAAAAACAAAACAATAAAATAGCTCGTTCAACAAGAGTCTACCACGCTTACAACACTAGGCTTAGAACAAGGATTATGGAAGAAAAGGGTGAACAAGAGAAGACTAAGCGAGACATCGAGGAAATCGGGGAAAAGGTTGATGCAATCATTGCCGCTTTAGAAAAGGACAAAATGGTGGCAGATACGACTAAAGGATTGGAATTCCATAATTCCGTAAAGCGGAAGCGTGAGTGA

mRNA sequence

ATGCGAGAAAGAGATTATGATATATTGGACAAGGAGAATAGAAGGTTGATTGAAGAGAATCATGCTCTGAGGAATGAAAATACTGCACTACGAAGGGCAACTCGTTCACAAGAGGACAGGATCAAAGACCTTTCAAGAGGCAAAGAGACTCTCTTAGAGTTAGTTGCGGAATTAAACGAAACCATCAACAAGCAGAAAACGCAACTTATCAAGTTTGAAGAAGCTAATACTGCTCTAAGCTCATTAGAACGTCAGCTCCAAGCATTTCAGAGTGCAAGCGAACAATTGTCGCTAGAGAGAGGACAACTAGAAGAGAAATACTCCTCATTAAGGGGAGATTATGCCATTATGAGAGATGACATGCAAATAATTCTTGGGAAAGTAAATCGAACCATGAACACTATCAAGATCATGGCTAGGAGAGCTCGAGGATTTGCAGAATGGGCAAGGGATCTACGAGAGAGTACTTCACCTATGGCTTCTAATGCAGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACGTTGGGCTTAGAACAAGGATTATGGAAGAAAAGGGTGAACAAGAGAAGACTAAGCGAGACATCGAGGAAATCGGGGAAAAGGTTGATGCAATCATTGCCGCTTTAGAAAAGGACAAAATGGTGGCAGATACGACTAAAGGATTGGAATTCCATAATTCCGTAAAGCGGAAGCGTGAGTGA

Coding sequence (CDS)

ATGCGAGAAAGAGATTATGATATATTGGACAAGGAGAATAGAAGGTTGATTGAAGAGAATCATGCTCTGAGGAATGAAAATACTGCACTACGAAGGGCAACTCGTTCACAAGAGGACAGGATCAAAGACCTTTCAAGAGGCAAAGAGACTCTCTTAGAGTTAGTTGCGGAATTAAACGAAACCATCAACAAGCAGAAAACGCAACTTATCAAGTTTGAAGAAGCTAATACTGCTCTAAGCTCATTAGAACGTCAGCTCCAAGCATTTCAGAGTGCAAGCGAACAATTGTCGCTAGAGAGAGGACAACTAGAAGAGAAATACTCCTCATTAAGGGGAGATTATGCCATTATGAGAGATGACATGCAAATAATTCTTGGGAAAGTAAATCGAACCATGAACACTATCAAGATCATGGCTAGGAGAGCTCGAGGATTTGCAGAATGGGCAAGGGATCTACGAGAGAGTACTTCACCTATGGCTTCTAATGCAGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACGTTGGGCTTAGAACAAGGATTATGGAAGAAAAGGGTGAACAAGAGAAGACTAAGCGAGACATCGAGGAAATCGGGGAAAAGGTTGATGCAATCATTGCCGCTTTAGAAAAGGACAAAATGGTGGCAGATACGACTAAAGGATTGGAATTCCATAATTCCGTAAAGCGGAAGCGTGAGTGA

Protein sequence

MRERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETINKQKTQLIKFEEANTALSSLERQLQAFQSASEQLSLERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTSPMASNAEELFEFLGMIRRDVGLRTRIMEEKGEQEKTKRDIEEIGEKVDAIIAALEKDKMVADTTKGLEFHNSVKRKRE

Homology

[Close]

BLAST of Spg026744 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-21
Identity = 71/201 (35.32%), Postives = 115/201 (57.21%), Query Frame = 0


Query: 3   ERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETI 62
           E+D + LDKE RR+ + N  L+NE T L+    SQ++ IKDL  GKE  LELV +LN +I
Sbjct: 119 EKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSI 178

Query: 63  NKQKTQLIKFEEANTAL-------------------------SSLERQLQAFQSASEQLS 122
            K++TQ++  E  N +L                          SL  QL A Q++S++++
Sbjct: 179 GKRETQIMDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRIT 238

Query: 123 LERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTS 179
            E   L   Y  ++ DY +   D Q+++ +V++T+  ++++++RA GFAEWA DLR +  
Sbjct: 239 QEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFF 298

[Close]

BLAST of Spg026744 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-21
Identity = 71/201 (35.32%), Postives = 115/201 (57.21%), Query Frame = 0


Query: 3   ERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETI 62
           E+D +  DKE RR+ + N +L+NE T L+    S+++ IKDL  GKE  LELV +LN +I
Sbjct: 167 EKDLETSDKEMRRMNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSI 226

Query: 63  NKQKTQLIKFEEANTAL-------------------------SSLERQLQAFQSASEQLS 122
            K++TQ++  E  N +L                          SL  QL A Q++S++++
Sbjct: 227 GKRETQIMDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRIT 286

Query: 123 LERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTS 179
            E   L   Y  ++ DY +   D Q+++ +V++T+  +++M++RA GFAEWA DLR    
Sbjct: 287 QEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMMSKRANGFAEWAADLRVKFF 346

[Close]

BLAST of Spg026744 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 8.7e-21
Identity = 70/201 (34.83%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 3   ERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETI 62
           E+D + LDKE RR+ + N +L+NE T L+    SQ + IKDL  GKE  LE V +LN +I
Sbjct: 142 EKDLETLDKEMRRMNKANRSLKNEKTTLQATVGSQNEYIKDLENGKEYFLERVNDLNTSI 201

Query: 63  NKQKTQLIKFEEANTAL-------------------------SSLERQLQAFQSASEQLS 122
            K++TQ++  E  N +L                          SL  QL A Q++S +++
Sbjct: 202 GKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYVESLHYQLTALQNSSRRIT 261

Query: 123 LERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTS 179
            E   L   Y  ++ DY +   D Q+++ +V++T+  ++++++RA GFAEWA DLR +  
Sbjct: 262 QEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFF 321

[Close]

BLAST of Spg026744 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 4.3e-20
Identity = 72/224 (32.14%), Postives = 125/224 (55.80%), Query Frame = 0


Query: 3   ERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETI 62
           E++ ++LD+E RR+ + N +L+NE T L+    SQ++ IKDL   KE  LELV +L  +I
Sbjct: 177 EKNLEVLDEEMRRMNKSNRSLKNEKTILQATVESQDEYIKDLENMKEYYLELVNDLKSSI 236

Query: 63  NKQKTQLIKFEEANTAL-------------------------SSLERQLQAFQSASEQLS 122
            K++ Q++  E  N +L                          SL  QL AFQ++SE++ 
Sbjct: 237 GKREAQIVDLEVHNCSLRQTVDSLHVKMVEHSEDYKILKNYADSLHHQLTAFQNSSERIV 296

Query: 123 LERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTS 182
            E   L+  Y  ++ DY + R D Q ++ +V++T+  ++I++RRA GFAEWA DLR +  
Sbjct: 297 QEYKLLKTDYMQMKVDYDLQRRDFQTLVERVDQTIGFLRIVSRRANGFAEWAADLRINFF 356

Query: 183 PMASNAEELFEFLGMIRRDVGL--RTRIMEEKGEQEKTKRDIEE 200
            +  ++++L  FL MI R++G   + +++ E  +     +D ++
Sbjct: 357 SIRPHSDDLNRFLKMICRELGHFGKGKVVVETAQSSNPVQDTDD 400

[Close]

BLAST of Spg026744 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-20
Identity = 69/201 (34.33%), Postives = 112/201 (55.72%), Query Frame = 0


Query: 3   ERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETI 62
           E+D + LDKE RR+ + N +L+NE T L+    SQ++ IKDL  GKE  LE V +LN +I
Sbjct: 25  EKDLETLDKEMRRMDKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLERVNDLNTSI 84

Query: 63  NKQKTQLIKFEEANTAL-------------------------SSLERQLQAFQSASEQLS 122
            K++TQ++  E  N +L                          SL  QL A Q++S +++
Sbjct: 85  GKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRIT 144

Query: 123 LERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTS 179
            E   L   Y  ++ DY +   D Q+++ +V++T+  ++++++RA GF EW  DLR +  
Sbjct: 145 QEYESLNIDYVQMKVDYDMETRDFQVLVERVDQTIEFLRMVSKRANGFVEWTADLRVNFF 204

[Close]

BLAST of Spg026744 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.5e-22
Identity = 71/201 (35.32%), Postives = 115/201 (57.21%), Query Frame = 0


Query: 3   ERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETI 62
           E+D +  DKE RR+ + N +L+NE T L+    S+++ IKDL  GKE  LELV +LN +I
Sbjct: 167 EKDLETSDKEMRRMNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSI 226

Query: 63  NKQKTQLIKFEEANTAL-------------------------SSLERQLQAFQSASEQLS 122
            K++TQ++  E  N +L                          SL  QL A Q++S++++
Sbjct: 227 GKRETQIMDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRIT 286

Query: 123 LERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTS 179
            E   L   Y  ++ DY +   D Q+++ +V++T+  +++M++RA GFAEWA DLR    
Sbjct: 287 QEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMMSKRANGFAEWAADLRVKFF 346

[Close]

BLAST of Spg026744 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.5e-22
Identity = 71/201 (35.32%), Postives = 115/201 (57.21%), Query Frame = 0


Query: 3   ERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETI 62
           E+D + LDKE RR+ + N  L+NE T L+    SQ++ IKDL  GKE  LELV +LN +I
Sbjct: 119 EKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSI 178

Query: 63  NKQKTQLIKFEEANTAL-------------------------SSLERQLQAFQSASEQLS 122
            K++TQ++  E  N +L                          SL  QL A Q++S++++
Sbjct: 179 GKRETQIMDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRIT 238

Query: 123 LERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTS 179
            E   L   Y  ++ DY +   D Q+++ +V++T+  ++++++RA GFAEWA DLR +  
Sbjct: 239 QEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFF 298

[Close]

BLAST of Spg026744 vs. ExPASy TrEMBL
Match: A0A5A7V9X6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-21
Identity = 70/201 (34.83%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 3   ERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETI 62
           E+D + LDKE RR+ + N +L+NE T L+    SQ + IKDL  GKE  LE V +LN +I
Sbjct: 142 EKDLETLDKEMRRMNKANRSLKNEKTTLQATVGSQNEYIKDLENGKEYFLERVNDLNTSI 201

Query: 63  NKQKTQLIKFEEANTAL-------------------------SSLERQLQAFQSASEQLS 122
            K++TQ++  E  N +L                          SL  QL A Q++S +++
Sbjct: 202 GKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYVESLHYQLTALQNSSRRIT 261

Query: 123 LERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTS 179
            E   L   Y  ++ DY +   D Q+++ +V++T+  ++++++RA GFAEWA DLR +  
Sbjct: 262 QEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFF 321

[Close]

BLAST of Spg026744 vs. ExPASy TrEMBL
Match: A0A5A7UX37 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-20
Identity = 69/201 (34.33%), Postives = 112/201 (55.72%), Query Frame = 0


Query: 3   ERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETI 62
           E+D + LDKE RR+ + N +L+NE T L+    SQ++ IKDL  GKE  LE V +LN +I
Sbjct: 25  EKDLETLDKEMRRMDKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLERVNDLNTSI 84

Query: 63  NKQKTQLIKFEEANTAL-------------------------SSLERQLQAFQSASEQLS 122
            K++TQ++  E  N +L                          SL  QL A Q++S +++
Sbjct: 85  GKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRIT 144

Query: 123 LERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTS 179
            E   L   Y  ++ DY +   D Q+++ +V++T+  ++++++RA GF EW  DLR +  
Sbjct: 145 QEYESLNIDYVQMKVDYDMETRDFQVLVERVDQTIEFLRMVSKRANGFVEWTADLRVNFF 204

[Close]

BLAST of Spg026744 vs. ExPASy TrEMBL
Match: A0A5D3DUG2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-20
Identity = 70/196 (35.71%), Postives = 110/196 (56.12%), Query Frame = 0


Query: 3   ERDYDILDKENRRLIEENHALRNENTALRRATRSQEDRIKDLSRGKETLLELVAELNETI 62
           E D   LDKE RR+ + N +L+NE T L+    SQ++ IKDL  GKE  LELV +LN +I
Sbjct: 126 ENDLKTLDKEMRRMNKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSI 185

Query: 63  NKQKTQLIKFEEANTAL-------------------------SSLERQLQAFQSASEQLS 122
            K++TQ++  E  N +L                          SL  QL A Q++S++++
Sbjct: 186 VKRETQIMDLEAQNHSLRQTIDNLHLKMAERSEEYEILKNYADSLHFQLTAHQNSSKRIT 245

Query: 123 LERGQLEEKYSSLRGDYAIMRDDMQIILGKVNRTMNTIKIMARRARGFAEWARDLRESTS 174
            E   L   Y  ++ DY +   D Q+++ +V++T+  ++++++RA GFAEWA DLR +  
Sbjct: 246 QEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFF 305

The following BLAST results are available for this feature:

BLAST of Spg026744 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23632.1	1.3e-21	35.32	girdin-like [Cucumis melo var. makuwa]	[more]
TYK18656.1	1.3e-21	35.32	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0062685.1	8.7e-21	34.83	girdin-like [Cucumis melo var. makuwa]	[more]
XP_031738551.1	4.3e-20	32.14	LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]	[more]
KAA0060422.1	5.6e-20	34.33	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of Spg026744 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg026744 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D533	6.5e-22	35.32	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE...	[more]
A0A5D3DJ95	6.5e-22	35.32	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]
A0A5A7V9X6	4.2e-21	34.83	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 P...	[more]
A0A5A7UX37	2.7e-20	34.33	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE...	[more]
A0A5D3DUG2	3.6e-20	35.71	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 P...	[more]

BLAST of Spg026744 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..106
None	No IPR available	COILS	Coil	Coil	coord: 6..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg026744.1	Spg026744.1	mRNA