Spg026717 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg026717
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosome assembly factor mrt4
Location	scaffold6: 20550060 .. 20551261 (+)
RNA-Seq Expression	Spg026717
Synteny	Spg026717

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTCCTGAACTTTTAATTTTGTGTCCCGCCATCACTCACTTTTATACTCACCGAGTAGCCGCTTCCTTCGCGCCCACTGTCACTCTCTCTCTCGTTCCGCGGTTGGAACTTACGAATCTGTTGGTGTAAAGCAGGTATATTTGTAGCTATTGAAGATGCCCAAGTCGAAGCGTGATAGACCAGGTCCGTTTTAATCACTTCCAACATATTCATGCCATGTTTCCACAAGAAGTTGAATCCTACAAAACTCTTAGGATTTTAATAACCTAGATAGCTATCTACTATTGGATTTTAACTCAGGTCCCCAAACTTGTTTGGTTTCAAGTTTAATTGTGTGTTAGTATGTTTTTAATATGGAGTAACGACTCAAGTATTTCAGTTTTGTAAGGTTCCTCGGAGCAAATGTTTTTTATAAGGTAGCTTGGTATCTTTTTTTTACTCTCTGTCAATGATAAACTGTGATAGGAGTGGTAGCAAGATAGTGTGAGCCTTCTAATTTGATGGAAGAACCATTTTAGTATAAGGTGTTGTCAAGAGCTGGCCAAGGTGAAAGGTTCCATCTGTATGCAAAATGTAGAGTTGCTTACAACCTAGGGAACATGATGTCTAAAGTTCCCGTATTTATTAACTGAGATTAATTTCTAGATAAGAATTGAAACAATATTTAGTAGGCTAATGAATGTTGTTAAATAGAAACCAAGCAACAGTAAACCTAGGAGAACTTAATAACTCTCTTTAACATAGAAAGATGCTAAAATTTGTTCTTATAATTCAAGGTTCTTGTTAAATTATGGGTTAGTTAATAAGGTAGTTCTTTTCAAAAGTTTTGTCTGAGGCAATTTAAGAATTTAAAGGACTTGTGGTGCTAGTATTCATTGTCAAACTTGTGTGGGAAAACTTAAAGGAAAGAGGAAAAATATGAACAACTTAGTCTATTGCAGATTAGTGTTTTGACTAACTTTTCGGTGGGATAAATGCAGTTACTTTATCAAAAACCAAGAAAAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACCGTTGAGAACATGCGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTAAAGTCAACTAGCAGGCAAGTTGTATTTTCGTACTTTATTATATATTTGCTGCATCATTTCAAATATTGA

mRNA sequence

ATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAAAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACCGTTGAGAACATGCGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTAAAGTCAACTAGCAGGCAAGTTGTATTTTCGTACTTTATTATATATTTGCTGCATCATTTCAAATATTGA

Coding sequence (CDS)

ATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAAAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACCGTTGAGAACATGCGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTAAAGTCAACTAGCAGGCAAGTTGTATTTTCGTACTTTATTATATATTTGCTGCATCATTTCAAATATTGA

Protein sequence

MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSRQVVFSYFIIYLLHHFKY

Homology

[Close]

BLAST of Spg026717 vs. NCBI nr
Match: XP_022157470.1 (mRNA turnover protein 4 homolog [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 3.5e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61 KSTSR 66
          KSTSR
Sbjct: 61 KSTSR 65

[Close]

BLAST of Spg026717 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.0e-24
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61 KSTSR 66
          KS+SR
Sbjct: 61 KSSSR 65

[Close]

BLAST of Spg026717 vs. NCBI nr
Match: XP_022969955.1 (mRNA turnover protein 4 homolog [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 1.0e-24
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61 KSTSR 66
          KS+SR
Sbjct: 61 KSSSR 65

[Close]

BLAST of Spg026717 vs. NCBI nr
Match: XP_023529350.1 (mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 1.0e-24
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61 KSTSR 66
          KS+SR
Sbjct: 61 KSSSR 65

[Close]

BLAST of Spg026717 vs. NCBI nr
Match: XP_038902849.1 (mRNA turnover protein 4 homolog [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 8.5e-24
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRDRPVTLSKTKKKGREHKKSMV+LIRQAVENYNSI+VFTVENMRNLKFKELREQL
Sbjct: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVELIRQAVENYNSIFVFTVENMRNLKFKELREQL 60

Query: 61 KSTSR 66
          KS+SR
Sbjct: 61 KSSSR 65

[Close]

BLAST of Spg026717 vs. ExPASy Swiss-Prot
Match: A4FV84 (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-09
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1  MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg026717 vs. ExPASy Swiss-Prot
Match: Q9UKD2 (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-09
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1  MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg026717 vs. ExPASy Swiss-Prot
Match: Q9D0I8 (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-09
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1  MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg026717 vs. ExPASy Swiss-Prot
Match: Q7S302 (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-06
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKR +   L++  KK RE K+ + + IR+ + NY   +VF+++NMRN   K++R++L
Sbjct: 1  MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60

[Close]

BLAST of Spg026717 vs. ExPASy Swiss-Prot
Match: Q75DK9 (Ribosome assembly factor mrt4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MRT4 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.9e-06
Identity = 25/57 (43.86%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELR 58
          MP+SKR + VTL++T+KKGRE+K+ + D +RQA++ Y  ++V  +E++R    +E+R
Sbjct: 1  MPRSKRSKLVTLAQTEKKGRENKERIFDEVRQALDTYRYVWVLRLEDVRTPVLQEIR 57

[Close]

BLAST of Spg026717 vs. ExPASy TrEMBL
Match: A0A6J1DT71 (Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61 KSTSR 66
          KSTSR
Sbjct: 61 KSTSR 65

[Close]

BLAST of Spg026717 vs. ExPASy TrEMBL
Match: A0A6J1I1E2 (Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.9e-25
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61 KSTSR 66
          KS+SR
Sbjct: 61 KSSSR 65

[Close]

BLAST of Spg026717 vs. ExPASy TrEMBL
Match: A0A6J1F4Z2 (Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.9e-25
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61 KSTSR 66
          KS+SR
Sbjct: 61 KSSSR 65

[Close]

BLAST of Spg026717 vs. ExPASy TrEMBL
Match: A0A1U8ANZ6 (Ribosome assembly factor mrt4 OS=Nelumbo nucifera OX=4432 GN=LOC104602543 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-20
Identity = 53/65 (81.54%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKR+RPVTLSKTKKKG+EHK+++V+ IRQA++NYNSIYVF+ ENMRNLKFKE REQL
Sbjct: 1  MPKSKRNRPVTLSKTKKKGKEHKEAIVNSIRQAIDNYNSIYVFSFENMRNLKFKEFREQL 60

Query: 61 KSTSR 66
          KSTSR
Sbjct: 61 KSTSR 65

[Close]

BLAST of Spg026717 vs. ExPASy TrEMBL
Match: D7T050 (Ribosome assembly factor mrt4 OS=Vitis vinifera OX=29760 GN=VIT_12s0034g01000 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.2e-20
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRDRPVTLSKTKKKGR HK+S+V+ IRQAVENY+SIYVF+ ENMRNLKFKE RE+L
Sbjct: 1  MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKL 60

Query: 61 KSTSR 66
          KSTSR
Sbjct: 61 KSTSR 65

[Close]

BLAST of Spg026717 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-19
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
          MPKSKRDRPVTLSKTKKKGREHK+ +V+ IR+AVE Y+S+YVF+ ENMRN+KFKE R+Q 
Sbjct: 1  MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 61 KSTSR 66
          +   +
Sbjct: 61 RHNGK 65

The following BLAST results are available for this feature:

BLAST of Spg026717 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157470.1	3.5e-25	100.00	mRNA turnover protein 4 homolog [Momordica charantia]	[more]
XP_022933518.1	1.0e-24	98.46	mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover...	[more]
XP_022969955.1	1.0e-24	98.46	mRNA turnover protein 4 homolog [Cucurbita maxima]	[more]
XP_023529350.1	1.0e-24	98.46	mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_038902849.1	8.5e-24	95.38	mRNA turnover protein 4 homolog [Benincasa hispida]	[more]

BLAST of Spg026717 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FV84	6.2e-09	47.54	mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1	[more]
Q9UKD2	6.2e-09	47.54	mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2	[more]
Q9D0I8	6.2e-09	47.54	mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1	[more]
Q7S302	2.9e-06	41.67	Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	[more]
Q75DK9	4.9e-06	43.86	Ribosome assembly factor mrt4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51...	[more]

BLAST of Spg026717 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DT71	1.7e-25	100.00	Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=...	[more]
A0A6J1I1E2	4.9e-25	98.46	Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 S...	[more]
A0A6J1F4Z2	4.9e-25	98.46	Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3...	[more]
A0A1U8ANZ6	4.7e-20	81.54	Ribosome assembly factor mrt4 OS=Nelumbo nucifera OX=4432 GN=LOC104602543 PE=3 S...	[more]
D7T050	6.2e-20	84.62	Ribosome assembly factor mrt4 OS=Vitis vinifera OX=29760 GN=VIT_12s0034g01000 PE...	[more]

BLAST of Spg026717 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25260.1	1.4e-19	69.23	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 10..71 e-value: 5.4E-9 score: 38.1
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 20..63
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 19..68 e-value: 3.5E-9 score: 36.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR45841:SF4	RIBOSOME ASSEMBLY FACTOR MRT4	coord: 1..70
None	No IPR available	PANTHER	PTHR45841	MRNA TURNOVER PROTEIN 4 MRTO4	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg026717.1	Spg026717.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor