Spg026709 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg026709
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4
Locationscaffold6: 18812034 .. 18812557 (+)
RNA-Seq ExpressionSpg026709
SyntenySpg026709
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCGCGCGATGACGCCGAGGAATTTAAAGCTTGCAGTAGTATCTATTACAATTGCGGAGATTTGGTCAACATCACGTATCCGTTTTGGGGGAATGAGCGGTAGGGGTTTTGCGGTCGGGAAGAATTCGAGCTCAAGTGCAAAGACAACAAAACCACCACGATTGAAATCAATTCGTTGAAATATTACGTTCTGTGAACATCAGCCAAATGGATCATAGAATGACAATCGCAAGATCAGACCTCTTCCGATGATTACTGCCCTAGAAATCAAATCCAAACGGCGACGTTGGATCATGATCTCTTTACGTATTCTTTGAAGGATCGGAACATATCCATCTGGTACAAATCGTACGATTGCTCAGCGGAACTGGGGATTCCGGTGTATTACAGATTTTTGTGCGGTTGGGTAGGGGGTTCGAAGTACAGAGCAACGCCGGTGGAGAAGGCTCTGAGAGCGACGCCGGTGGAGAAGGCTCTGAGAGAAGGGTTTGAAGTAGACTACGGGATTGGCATCGGGTAG

mRNA sequence

ATGTTTCGCGCGATGACGCCGAGGAATTTAAAGCTTGCAGTAGTATCTATTACAATTGCGGAGATTTGGTCAACATCACGTATCCGTTTTGGGGGAATGAGCGGTAGGGGTTTTGCGGTCGGGAAGAATTCGAGCTCAAATCAGACCTCTTCCGATGATTACTGCCCTAGAAATCAAATCCAAACGGCGACGTTGGATCATGATCTCTTTACGTATTCTTTGAAGGATCGGAACATATCCATCTGGTACAAATCGTACGATTGCTCAGCGGAACTGGGGATTCCGGTGTATTACAGATTTTTGTGCGGTTGGGTAGGGGGTTCGAAGTACAGAGCAACGCCGGTGGAGAAGGCTCTGAGAGCGACGCCGGTGGAGAAGGCTCTGAGAGAAGGGTTTGAAGTAGACTACGGGATTGGCATCGGGTAG

Coding sequence (CDS)

ATGTTTCGCGCGATGACGCCGAGGAATTTAAAGCTTGCAGTAGTATCTATTACAATTGCGGAGATTTGGTCAACATCACGTATCCGTTTTGGGGGAATGAGCGGTAGGGGTTTTGCGGTCGGGAAGAATTCGAGCTCAAATCAGACCTCTTCCGATGATTACTGCCCTAGAAATCAAATCCAAACGGCGACGTTGGATCATGATCTCTTTACGTATTCTTTGAAGGATCGGAACATATCCATCTGGTACAAATCGTACGATTGCTCAGCGGAACTGGGGATTCCGGTGTATTACAGATTTTTGTGCGGTTGGGTAGGGGGTTCGAAGTACAGAGCAACGCCGGTGGAGAAGGCTCTGAGAGCGACGCCGGTGGAGAAGGCTCTGAGAGAAGGGTTTGAAGTAGACTACGGGATTGGCATCGGGTAG

Protein sequence

MFRAMTPRNLKLAVVSITIAEIWSTSRIRFGGMSGRGFAVGKNSSSNQTSSDDYCPRNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGWVGGSKYRATPVEKALRATPVEKALREGFEVDYGIGIG
Homology
BLAST of Spg026709 vs. NCBI nr
Match: XP_022137293.1 (uncharacterized protein LOC111008790 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 46/116 (39.66%), Postives = 56/116 (48.28%), Query Frame = 0

Query: 52  DDYCPRNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGW----VGG 111
           DDYCP+NQI+TA  DH L TY   DRN+S W   YDC  + GIP  +RF CGW     G 
Sbjct: 107 DDYCPKNQIETAKFDHHLLTYYWYDRNMSFW---YDCPPQQGIPDEFRFFCGWEGERSGR 166

Query: 112 SKYRATPVE--------------------------KALRATPVEKALREGFEVDYG 138
           + Y   P E                          K  R   +EKAL+ GF+V+YG
Sbjct: 167 ANYALEPEEMNLSGNIRGCKMNVEVXVTIEGLEEGKENRTARLEKALQRGFDVEYG 219

BLAST of Spg026709 vs. NCBI nr
Match: XP_022137106.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-11
Identity = 47/119 (39.50%), Postives = 60/119 (50.42%), Query Frame = 0

Query: 52  DDYCP--RNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGWVG--- 111
           DDYCP  ++QI+TATLD+ LF YS  +RN+S+W   Y+C  + GIP  YRF CGW G   
Sbjct: 124 DDYCPKHKHQIETATLDYHLFMYSSNNRNVSVW---YNCQPQEGIPDDYRFWCGWEGERN 183

Query: 112 ----------------------GSKYRATPVEKAL------RATPVEKALREGFEVDYG 138
                                 G K   T   + L      R   VEKA+R GF+V+YG
Sbjct: 184 GSGNNYAFEAAAMNLSRNMRGCGMKIEVTVTTEVLKEGSNNRRRLVEKAVRGGFDVEYG 239

BLAST of Spg026709 vs. NCBI nr
Match: XP_038894042.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 isoform X2 [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 46/117 (39.32%), Postives = 57/117 (48.72%), Query Frame = 0

Query: 52  DDYCPRNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGWVGGSKYR 111
           DDYCP+NQI+TATLDH+LF YS  + N+ +W   YDC A  GIP  +RF CGW   S  R
Sbjct: 106 DDYCPKNQIKTATLDHNLFKYSSNNLNLYVW---YDCPALEGIPRDFRFECGWEEESSGR 165

Query: 112 AT-PVEK------------------------------ALRATPVEKALREGFEVDYG 138
           A   +EK                                R   VE  ++EGFEV+ G
Sbjct: 166 ANYALEKKDAMNWSRNMSDCRMKIEVIIIKDVLKAGETNRTVVVENGVKEGFEVENG 219

BLAST of Spg026709 vs. NCBI nr
Match: XP_038894041.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 isoform X1 [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 46/117 (39.32%), Postives = 57/117 (48.72%), Query Frame = 0

Query: 52  DDYCPRNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGWVGGSKYR 111
           DDYCP+NQI+TATLDH+LF YS  + N+ +W   YDC A  GIP  +RF CGW   S  R
Sbjct: 106 DDYCPKNQIKTATLDHNLFKYSSNNLNLYVW---YDCPALEGIPRDFRFECGWEEESSGR 165

Query: 112 AT-PVEK------------------------------ALRATPVEKALREGFEVDYG 138
           A   +EK                                R   VE  ++EGFEV+ G
Sbjct: 166 ANYALEKKDAMNWSRNMSDCRMKIEVIIIKDVLKAGETNRTVVVENGVKEGFEVENG 219

BLAST of Spg026709 vs. NCBI nr
Match: XP_022137292.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111008789 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 45/116 (38.79%), Postives = 58/116 (50.00%), Query Frame = 0

Query: 52  DDYCPRNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGWV----GG 111
           D+ CP+NQ QTATLDH LF YS  D+NIS+    Y+CSA+  IP  Y+F CG      G 
Sbjct: 104 DNLCPKNQTQTATLDHHLFVYSSNDQNISV---RYNCSAQKEIPETYKFSCGSEEEKNGR 163

Query: 112 SKYRATP--------VEKAL------------------RATPVEKALREGFEVDYG 138
           + Y   P        +E+                    R   VEKA+R GF+V+YG
Sbjct: 164 ANYAFEPSAATWNLLIEECTMNIDVKVTMEGLKEGLKNRTRLVEKAVRRGFDVEYG 216

BLAST of Spg026709 vs. ExPASy TrEMBL
Match: A0A6J1C9Y1 (uncharacterized protein LOC111008790 OS=Momordica charantia OX=3673 GN=LOC111008790 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 46/116 (39.66%), Postives = 56/116 (48.28%), Query Frame = 0

Query: 52  DDYCPRNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGW----VGG 111
           DDYCP+NQI+TA  DH L TY   DRN+S W   YDC  + GIP  +RF CGW     G 
Sbjct: 107 DDYCPKNQIETAKFDHHLLTYYWYDRNMSFW---YDCPPQQGIPDEFRFFCGWEGERSGR 166

Query: 112 SKYRATPVE--------------------------KALRATPVEKALREGFEVDYG 138
           + Y   P E                          K  R   +EKAL+ GF+V+YG
Sbjct: 167 ANYALEPEEMNLSGNIRGCKMNVEVXVTIEGLEEGKENRTARLEKALQRGFDVEYG 219

BLAST of Spg026709 vs. ExPASy TrEMBL
Match: A0A6J1C5I6 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 OS=Momordica charantia OX=3673 GN=LOC111008663 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 47/119 (39.50%), Postives = 60/119 (50.42%), Query Frame = 0

Query: 52  DDYCP--RNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGWVG--- 111
           DDYCP  ++QI+TATLD+ LF YS  +RN+S+W   Y+C  + GIP  YRF CGW G   
Sbjct: 124 DDYCPKHKHQIETATLDYHLFMYSSNNRNVSVW---YNCQPQEGIPDDYRFWCGWEGERN 183

Query: 112 ----------------------GSKYRATPVEKAL------RATPVEKALREGFEVDYG 138
                                 G K   T   + L      R   VEKA+R GF+V+YG
Sbjct: 184 GSGNNYAFEAAAMNLSRNMRGCGMKIEVTVTTEVLKEGSNNRRRLVEKAVRGGFDVEYG 239

BLAST of Spg026709 vs. ExPASy TrEMBL
Match: A0A6J1C7V1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111008789 OS=Momordica charantia OX=3673 GN=LOC111008789 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 45/116 (38.79%), Postives = 58/116 (50.00%), Query Frame = 0

Query: 52  DDYCPRNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGWV----GG 111
           D+ CP+NQ QTATLDH LF YS  D+NIS+    Y+CSA+  IP  Y+F CG      G 
Sbjct: 104 DNLCPKNQTQTATLDHHLFVYSSNDQNISV---RYNCSAQKEIPETYKFSCGSEEEKNGR 163

Query: 112 SKYRATP--------VEKAL------------------RATPVEKALREGFEVDYG 138
           + Y   P        +E+                    R   VEKA+R GF+V+YG
Sbjct: 164 ANYAFEPSAATWNLLIEECTMNIDVKVTMEGLKEGLKNRTRLVEKAVRRGFDVEYG 216

BLAST of Spg026709 vs. ExPASy TrEMBL
Match: A0A5D3BIU5 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002100 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.5e-08
Identity = 41/117 (35.04%), Postives = 52/117 (44.44%), Query Frame = 0

Query: 52  DDYCPRNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGWVGGSKYR 111
           DDYCP N+I  ATLD  LF YS  D N+S+W   YDC    GIP  + F CG  G    +
Sbjct: 103 DDYCPNNEIGVATLDFSLFKYSSNDLNLSVW---YDCPVLPGIPQNFEFKCGSEGERSGK 162

Query: 112 AT--------------------PVE-----------KALRATPVEKALREGFEVDYG 138
           A                      +E           K  R   +E+ ++EGFEV+YG
Sbjct: 163 ANYALEENEAMSWSAYTGECRIKIEVTIALEVFREGKMNRTMMMERGMKEGFEVEYG 216

BLAST of Spg026709 vs. ExPASy TrEMBL
Match: A0A1S3CBF9 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 OS=Cucumis melo OX=3656 GN=LOC103498559 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.5e-08
Identity = 41/117 (35.04%), Postives = 52/117 (44.44%), Query Frame = 0

Query: 52  DDYCPRNQIQTATLDHDLFTYSLKDRNISIWYKSYDCSAELGIPVYYRFLCGWVGGSKYR 111
           DDYCP N+I  ATLD  LF YS  D N+S+W   YDC    GIP  + F CG  G    +
Sbjct: 103 DDYCPNNEIGVATLDFSLFKYSSNDLNLSVW---YDCPVLPGIPQNFEFKCGSEGERSGK 162

Query: 112 AT--------------------PVE-----------KALRATPVEKALREGFEVDYG 138
           A                      +E           K  R   +E+ ++EGFEV+YG
Sbjct: 163 ANYALEENEAMSWSAYTGECRIKIEVTIALEVFREGKMNRTMMMERGMKEGFEVEYG 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137293.12.6e-1239.66uncharacterized protein LOC111008790 [Momordica charantia][more]
XP_022137106.13.7e-1139.50LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 [Mom... [more]
XP_038894042.12.4e-1039.32LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 isof... [more]
XP_038894041.12.4e-1039.32LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 isof... [more]
XP_022137292.16.0e-0938.79LOW QUALITY PROTEIN: uncharacterized protein LOC111008789 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C9Y11.3e-1239.66uncharacterized protein LOC111008790 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6J1C5I61.8e-1139.50LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 OS=M... [more]
A0A6J1C7V12.9e-0938.79LOW QUALITY PROTEIN: uncharacterized protein LOC111008789 OS=Momordica charantia... [more]
A0A5D3BIU55.5e-0835.04LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 OS=C... [more]
A0A1S3CBF95.5e-0835.04LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 OS=C... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg026709.1Spg026709.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity