Spg026643 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg026643
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Spindle pole body component protein
Location	scaffold6: 17628831 .. 17629893 (-)
RNA-Seq Expression	Spg026643
Synteny	Spg026643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAACCAAGTCCGCTTAACTGAGGGAACTCACCACCACCACGAGATACCGGAATTCTACGACGGCGACGGAGTGGAAAATGGACTGCCGCCGTATCAGTCAATGGTAGCGATTGAAAATTCTTGGTACTTTAAACCTCGCCTCTTTCTTGGCGTCGGATCGGAGCCGTCGTTCTCGTTCTGACCACTCGCCTTCGACCGAGAGGCTAGCCGGAGCGGTTAGTTTCCGATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGTGTGCCGGTGAACATGTCGCGCATGGACAATCCAGAGGCGACGGCGGCGCCGGGCGCTGAGGAGATGAGATCTCTGGCTCCGATCACCACCAGAAGACACCGGCGGAGAAAACGAGGCGCGTTGTTTCCTTCGGCGGCGAAACTGGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATCTCGGAGGATAAGGTAGTTCTGGTGGTGATGGAGAGAGAGAAAAGCGATGATCGGACCGCCGAAACGGAACGATCGGTGAAGAGAAAGAGCGGATCTCGAGACGGAGAGGCCAGAGGAGTTCACAGCCGTAACAACAGTAACGATTTCAGGTACGTACGGTTTGTCAGTTCGTGAATCTTCGATATCAATATCGAAATCGTAACGATCTGTGAAATGAAAACGACATCTGGAAATAATCTTTCTGCTATTTTCTCTCTCTGATCAGGCGAAGTCCGGCGGCGATTCCGGTCGTGATTCCAGCATTTTCTCCGACTCCGTTCTTGTTCTGATGCGATTCTGCTTCCATTTTCCAATCACTTCAGGCCTGTGTAATATATGTGTATATTTTTATCAAATAGTTGCATCGTAATAATAATTTGTATAATTAATTAAAATTTGAATAGAGAAAGTTGAGAGGTTGAGGAAGAAACTTCTCCATGGAATTGTAGCTTGTTTGACTGCTCTCTTTAATGGGGACTCTCTGCCATTTAAATGTTCCAATTTCTACATGATGATTTTTCGATTATATTTTTAGGGCAAGAATCTTCAATCTGTTTATGGATCTTTACACAAATTGTTGGAGAA

mRNA sequence

ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGTGTGCCGGTGAACATGTCGCGCATGGACAATCCAGAGGCGACGGCGGCGCCGGGCGCTGAGGAGATGAGATCTCTGGCTCCGATCACCACCAGAAGACACCGGCGGAGAAAACGAGGCGCGTTGTTTCCTTCGGCGGCGAAACTGGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATCTCGGAGGATAAGGTAGTTCTGGTGGTGATGGAGAGAGAGAAAAGCGATGATCGGACCGCCGAAACGGAACGATCGGTGAAGAGAAAGAGCGGATCTCGAGACGGAGAGGCCAGAGGAGTTCACAGCCGTAACAACAGTAACGATTTCAGGCGAAGTCCGGCGGCGATTCCGGTCGTGATTCCAGCATTTTCTCCGACTCCGTTCTTGTTCTGA

Coding sequence (CDS)

ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGTGTGCCGGTGAACATGTCGCGCATGGACAATCCAGAGGCGACGGCGGCGCCGGGCGCTGAGGAGATGAGATCTCTGGCTCCGATCACCACCAGAAGACACCGGCGGAGAAAACGAGGCGCGTTGTTTCCTTCGGCGGCGAAACTGGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATCTCGGAGGATAAGGTAGTTCTGGTGGTGATGGAGAGAGAGAAAAGCGATGATCGGACCGCCGAAACGGAACGATCGGTGAAGAGAAAGAGCGGATCTCGAGACGGAGAGGCCAGAGGAGTTCACAGCCGTAACAACAGTAACGATTTCAGGCGAAGTCCGGCGGCGATTCCGGTCGTGATTCCAGCATTTTCTCCGACTCCGTTCTTGTTCTGA

Protein sequence

MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLAADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDFRRSPAAIPVVIPAFSPTPFLF

Homology

[Close]

BLAST of Spg026643 vs. NCBI nr
Match: XP_022932132.1 (uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 uncharacterized protein LOC111783825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 6.1e-62
Identity = 126/140 (90.00%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLA 60
           MKFLFEFVSCCVPVNMSR++NPEATAAPG EEM+SLAPITTR+HRRRKRGAL PSAAKLA
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPITTRKHRRRKRGALLPSAAKLA 60

Query: 61  ADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDFR 120
           ADWKPSLGAISEDKVVLV+ EREKSDD+TAE+ERSVKRKSGSRDGEARGV+ R+NSNDFR
Sbjct: 61  ADWKPSLGAISEDKVVLVLREREKSDDQTAESERSVKRKSGSRDGEARGVNGRSNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPA+IPVVIPAFSPTPFLF
Sbjct: 121 RSPASIPVVIPAFSPTPFLF 140

[Close]

BLAST of Spg026643 vs. NCBI nr
Match: KAG6577452.1 (hypothetical protein SDJN03_25026, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.0 bits (624), Expect = 3.9e-61
Identity = 125/140 (89.29%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLA 60
           MKFLFEFVSCCVPVNMSR++NPEATAAPG EEM+SLAPITTR+HRRRKRGAL PSAAKLA
Sbjct: 63  MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPITTRKHRRRKRGALLPSAAKLA 122

Query: 61  ADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDFR 120
           ADWKPSLGAISEDKVVLV+ EREKSDD+TAE+ERSVKRKSGS DGEARGV+ R+NSNDFR
Sbjct: 123 ADWKPSLGAISEDKVVLVLREREKSDDQTAESERSVKRKSGSGDGEARGVNGRSNSNDFR 182

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPA+IPVVIPAFSPTPFLF
Sbjct: 183 RSPASIPVVIPAFSPTPFLF 202

[Close]

BLAST of Spg026643 vs. NCBI nr
Match: KAG7015524.1 (hypothetical protein SDJN02_23160 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.2 bits (622), Expect = 6.7e-61
Identity = 125/140 (89.29%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLA 60
           MKFLFEFVSCCVPVNMSR++ PEATAAPG EEM+SLAPITTR+HRRRKRGAL PSAAKLA
Sbjct: 1   MKFLFEFVSCCVPVNMSRLEIPEATAAPGVEEMKSLAPITTRKHRRRKRGALLPSAAKLA 60

Query: 61  ADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDFR 120
           ADWKPSLGAISEDKVVLV+ EREKSDD+TAE+ERSVKRKSGSRDGEARGV+ R+NSNDFR
Sbjct: 61  ADWKPSLGAISEDKVVLVLREREKSDDQTAESERSVKRKSGSRDGEARGVNGRSNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPA+IPVVIPAFSPTPFLF
Sbjct: 121 RSPASIPVVIPAFSPTPFLF 140

[Close]

BLAST of Spg026643 vs. NCBI nr
Match: XP_022985273.1 (uncharacterized protein LOC111483313 [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60
Identity = 124/140 (88.57%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLA 60
           MKFLFEFVSCCVPVNMSR++NPEATAAPG EEM+SLAPI TR+HRRRKRGAL PSAAKLA
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPIATRKHRRRKRGALLPSAAKLA 60

Query: 61  ADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDFR 120
           ADWKPSLGAISEDKVVLV+ EREKSDD+TA +ERSVKRKSGSRDGEARGV+ R+NSNDFR
Sbjct: 61  ADWKPSLGAISEDKVVLVLREREKSDDQTAGSERSVKRKSGSRDGEARGVNGRSNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPA+IPVVIPAFSPTPFLF
Sbjct: 121 RSPASIPVVIPAFSPTPFLF 140

[Close]

BLAST of Spg026643 vs. NCBI nr
Match: XP_038905048.1 (uncharacterized protein LOC120091204 [Benincasa hispida])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 123/142 (86.62%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLA 60
           MKFLFEFVSCCVPVNMSR++NPE T APG +E+RSLAPITTR+HRRRKR A  PSAAKLA
Sbjct: 43  MKFLFEFVSCCVPVNMSRIENPEETEAPGVKEVRSLAPITTRKHRRRKRSASLPSAAKLA 102

Query: 61  ADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDF- 120
            DWKPSLGAISEDKVVLVVMEREKSD++TAE+ERSVKRKSGSRDGE+RGVH RNNSNDF 
Sbjct: 103 VDWKPSLGAISEDKVVLVVMEREKSDEQTAESERSVKRKSGSRDGESRGVHGRNNSNDFS 162

Query: 121 -RRSPAAIPVVIPAFSPTPFLF 141
            RRSPAAIPVVIPAFSPTPFLF
Sbjct: 163 IRRSPAAIPVVIPAFSPTPFLF 184

[Close]

BLAST of Spg026643 vs. ExPASy TrEMBL
Match: A0A6J1EVT0 (uncharacterized protein LOC111438455 OS=Cucurbita moschata OX=3662 GN=LOC111438455 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.9e-62
Identity = 126/140 (90.00%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLA 60
           MKFLFEFVSCCVPVNMSR++NPEATAAPG EEM+SLAPITTR+HRRRKRGAL PSAAKLA
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPITTRKHRRRKRGALLPSAAKLA 60

Query: 61  ADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDFR 120
           ADWKPSLGAISEDKVVLV+ EREKSDD+TAE+ERSVKRKSGSRDGEARGV+ R+NSNDFR
Sbjct: 61  ADWKPSLGAISEDKVVLVLREREKSDDQTAESERSVKRKSGSRDGEARGVNGRSNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPA+IPVVIPAFSPTPFLF
Sbjct: 121 RSPASIPVVIPAFSPTPFLF 140

[Close]

BLAST of Spg026643 vs. ExPASy TrEMBL
Match: A0A6J1JD62 (uncharacterized protein LOC111483313 OS=Cucurbita maxima OX=3661 GN=LOC111483313 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.2e-61
Identity = 124/140 (88.57%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLA 60
           MKFLFEFVSCCVPVNMSR++NPEATAAPG EEM+SLAPI TR+HRRRKRGAL PSAAKLA
Sbjct: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPIATRKHRRRKRGALLPSAAKLA 60

Query: 61  ADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDFR 120
           ADWKPSLGAISEDKVVLV+ EREKSDD+TA +ERSVKRKSGSRDGEARGV+ R+NSNDFR
Sbjct: 61  ADWKPSLGAISEDKVVLVLREREKSDDQTAGSERSVKRKSGSRDGEARGVNGRSNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPA+IPVVIPAFSPTPFLF
Sbjct: 121 RSPASIPVVIPAFSPTPFLF 140

[Close]

BLAST of Spg026643 vs. ExPASy TrEMBL
Match: A0A6J1FP47 (uncharacterized protein LOC111447225 OS=Cucurbita moschata OX=3662 GN=LOC111447225 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 119/140 (85.00%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLA 60
           MKFL EFVSCCVPV++SRM+NPEAT APGAEE+RSLAPITTR HRRR+RGAL+ SAAK+A
Sbjct: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPITTRIHRRRRRGALYTSAAKMA 60

Query: 61  ADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDFR 120
            DW PSLGAISED VVLVVMER+KS+DRTAE+ERSVKRKSGS++G+ARGVH RNNSNDFR
Sbjct: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSQNGKARGVHGRNNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPAAIPVVIPAFSPTPFLF
Sbjct: 121 RSPAAIPVVIPAFSPTPFLF 140

[Close]

BLAST of Spg026643 vs. ExPASy TrEMBL
Match: A0A6J1JUN0 (uncharacterized protein LOC111489053 OS=Cucurbita maxima OX=3661 GN=LOC111489053 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.1e-56
Identity = 117/140 (83.57%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLA 60
           MKFL EFVSCCVPV++SRM+NPEAT APGAEE+RSLAP+TTR H RR+RGA + SAAK+A
Sbjct: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60

Query: 61  ADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDFR 120
            DW PSLGAISED VVLVVMER+KS+DRTAE+ERSVKRKSGSR+G+ARGVH RNNSNDFR
Sbjct: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFR 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           RSPAAIPVVIPAFSPTPFLF
Sbjct: 121 RSPAAIPVVIPAFSPTPFLF 140

[Close]

BLAST of Spg026643 vs. ExPASy TrEMBL
Match: A0A0A0L6G1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.7e-55
Identity = 120/143 (83.92%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPS-AAKL 60
           MKFLFEFVSCCVPVNMSR+DNPE T A G++EMRSL PITTR+HRRRKR AL PS AAKL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDF 120
           AADWKPSLGAISEDKVVLVVMEREKSD++T E ERSVKRKS SRDGE+RGVH RNNSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120

Query: 121 --RRSPAAIPVVIPAFSPTPFLF 141
             R+SP+AIPVVIPAFSP PFLF
Sbjct: 121 SLRQSPSAIPVVIPAFSPAPFLF 143

[Close]

BLAST of Spg026643 vs. TAIR 10
Match: AT5G54585.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-09
Identity = 47/140 (33.57%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRMDNPEATAAPGAEEMRSLAPITTRRHRRRKRGALFPSAAKLA 60
           MKFL E V  C           + +AA  A++  S    T  + RRR++           
Sbjct: 1   MKFLLELVVPCFGSQQF-----QESAASTADDSVSDETQTLMKQRRRRKRVRVAGQPGQV 60

Query: 61  ADWKPSLGAISEDKVVLVVMEREKSDDRTAETERSVKRKSGSRDGEARGVHSRNNSNDFR 120
           A+W+PSL  ISE+K  +  +  EK++++     +S     G     + G H R  S+DF 
Sbjct: 61  AEWRPSLSVISENKPAITKIS-EKNEEKKKVRRKSEGNGGGDASSRSGGGHIRFRSDDFG 120

Query: 121 RSPAAIPVVIPAFSPTPFLF 141
           R+  A   VIPAFSPTPF+F
Sbjct: 121 RN--AFEPVIPAFSPTPFMF 132

The following BLAST results are available for this feature:

BLAST of Spg026643 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932132.1	6.1e-62	90.00	uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 unchar...	[more]
KAG6577452.1	3.9e-61	89.29	hypothetical protein SDJN03_25026, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015524.1	6.7e-61	89.29	hypothetical protein SDJN02_23160 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022985273.1	1.5e-60	88.57	uncharacterized protein LOC111483313 [Cucurbita maxima]	[more]
XP_038905048.1	1.1e-58	86.62	uncharacterized protein LOC120091204 [Benincasa hispida]	[more]

BLAST of Spg026643 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg026643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVT0	2.9e-62	90.00	uncharacterized protein LOC111438455 OS=Cucurbita moschata OX=3662 GN=LOC1114384...	[more]
A0A6J1JD62	7.2e-61	88.57	uncharacterized protein LOC111483313 OS=Cucurbita maxima OX=3661 GN=LOC111483313...	[more]
A0A6J1FP47	1.7e-57	85.00	uncharacterized protein LOC111447225 OS=Cucurbita moschata OX=3662 GN=LOC1114472...	[more]
A0A6J1JUN0	3.1e-56	83.57	uncharacterized protein LOC111489053 OS=Cucurbita maxima OX=3661 GN=LOC111489053...	[more]
A0A0A0L6G1	2.7e-55	83.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1	[more]

BLAST of Spg026643 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54585.1	4.9e-09	33.57	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..115
None	No IPR available	PANTHER	PTHR35318	BNAA10G08410D PROTEIN	coord: 1..140
None	No IPR available	PANTHER	PTHR35318:SF2	BNAA10G08410D PROTEIN	coord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg026643.1	Spg026643.1	mRNA