Spg026449 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg026449
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold13: 16416514 .. 16419105 (+)
RNA-Seq Expression	Spg026449
Synteny	Spg026449

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTCTTGTTCCGTCGCTGTCGATTTGGTCCAGTCGCCGCCGCCGCTCAACCCTCCACCGGTATTGTTTTCTTGAAGGTTAGCTTCCGGTGGTTGTGATTTAGTTCGCCGCTTGTTCTCCGATTAGATTATGTTAACTCAAGCGATTTTCAAATTAATTTTAGATCAATTGCTCGATTTCAAGATTCGTGTTCGAGCTCTCAGTCACTGTCTTGTGCTGTCCAACAAGAGAATCCATGAATTGGGTGAGTTTCCCATCCCAATTTAGTTTGTTAACTATTTAATTGGAAATCAAAATTTTACCTATGATGGTTTTGGGTTTGTTGCAGAGCTGCCCATCCAACTACTACCTCAAATTTGCACCATTTCGTCCAAATTAAGATTCTGTTCAACAATTGTTTAGGCCTTTTCGGGTGAGTATTCAAGAATAAAGACCTCCCTTAAGCATGTTTGAGTTTAATTGAATTATTGGACCGAAATTTCTAATCTTAGAAACCCCTTTTATGCATAGTTGTGAGCATTTTTTGCTAAGGATTTAGAGAATCATTGGAGTAAGAATTTTGAGTAAAATTCTTGAACAGTACCGAGTAAGTGGCTCCCCCATTAGCTTGTTGAAAATTTAATGCTTAAATGTAAAATTGTTAGTCGTCATGATAATTGTAAAATTGTTGGGTGCTGATATGTTTTGATTGTGGTGTTTGTATTGAAATTGATTATGTGAAATTTCCTATGATTTATATGTTTTGTATCTGGAGTGTTGCGCATATAAATTAGAAATTTGATGTTTGTTATGAAAAAGTTATTTGAATGAAATGTGGATTTCCATGTGTTACATTATCATAAAGTTAGTTAGGAGACCTCACGTGCATATGTATGACTCACGGTGACGTACGTTCTTAGAAGTTTTGTCATTGGAAAGCTTGGCAGTATGGCCAAGAGTTTTATTAAAACTTGGCGATATGGTCAAGATGTGGTTTTGAATAATTTTCTTAAAACTTGGCGATATGGTAAAGATAATGGTTTTAGTACTTATTTTCAAAACTTGGCGATATGGCCATGATGACAGGTGGTGATATGGTCACGATAAAGTTTTAGTGGCGATAAGGTCACAGTACAGTTTTCGTGGCGATAGGGTCACGTTTGGCATTATGGTCAAGAAATAAAGTTGTTATAAAGCAAAGCTTAGGTCCCCTCATAAATGTTTGTGCTTGAATAACCAACCCTGGTAGAGGGGTTACTTACTGGGTATTTTTAATACTCATTCTTTGTTTATTTTAATTTTTTTAGGCAAGAGTAAGAATATGTTAGGCGACTGATCAAGAGCACTTGCTGGTGGCGCCATGGTGGACGATGTCAGCATATTTTTACTTCTGCATATTAGTGTCCTTTATTTGATTTTTTCTATGTAATTACTCAAGGATTCATTTAATTTGTTGCTTTTGAGGTTTCCAAATATTTTATGTTTTACAAAGTTTTCTTGGGATTCCAAATAAACGTCTATTGAAATTATTTATCCATTTTGCACACTTTTGGACGCCTAGAAAATTTTAACTTCATAGTTCTTTGAGTTATTCAAGTCCATAACATGCATCTAGTAACGTCCCTAGTCAGTCTATAAGTTTTAAAAAGTCGGGACGTTACACTATTTATGATGATTTCTTCCATAGAGAATATTTATAATGATTTTATCAAATCATATGAACAAATTATGATTTTTAAAATATAGGAATTAAATTCTAACTTTCTCCTAACCATATGAACTAAAATTTTAATTTAACAAAACACGTATTAATCTTATTGTTTGGCACGTTCCAATTTTTTATTATTTATTTATTATTTATTATTATTTTTTAAAAAAGTCTATAAAAAATCATCACATCTGAGCTAGAGATTTATTAATCTTGTTGTTATTGAAGATTTTCTTAATCTCCATCTTTAACATCAATCAAAAGTGTTTTGGCATTTTTACGACTTGCAACTATTAATTTCTCTTTCATGGTTTCTATTTTTTTTGAAATGAAAATGCTTGAATTGTTTAACTTTTGTACAAGGTTGTTTTTCCCAACCATACAAGGATTTCAGGAATGGATGGACTACCATGGGCTATTGTGAGACGCTTTGGAATAGGCACAGAGGAGATTCAATGGCTACAATGGAAGAAACAAATATGCAAAGGAGTCTAATTATATGCTGGCAGATATGGAATTACAAAAACGCGATTCTCCACAACAAGCAGAAGTCAAATACAGAGAGATTATCACAACAAATCAAACACTACATTGAAGAGATGGTAGAATCTAACCTGAAGGAAGCGATTCCAGCCTAATCGGCCTAATCCTAGGAGCTCCAGCTTCGATTTCGCAAGGATGGCTCCCAATTCCTTAAGGATGCTGGAAATTGAACTGTGATGCTTCGTGGTGTAATTCAAATCGGCGAGGTGGTCTTGGTTGGATTATTCGAAGGGAGGATGGATCGCCGGTGATTGCAGGCTGTCGGGTCATCACTCATCTGTGGAAAATCGCATGGCTTGAATCTCTGGCTGCCATTGATGGGTTGAAAGCTATACCAGATAGGGGTGTTAAAAAATAG

mRNA sequence

ATGTCGGTCTTGTTCCGTCGCTGTCGATTTGGTCCAGTCGCCGCCGCCGCTCAACCCTCCACCGGTATTGTTTTCTTGAAGATTCGTGTTCGAGCTCTCAGTCACTGTCTTGTGCTGTCCAACAAGAGAATCCATGAATTGGGATGCTGGAAATTGAACTGTGATGCTTCGTGGTGTAATTCAAATCGGCGAGGTGGTCTTGGTTGGATTATTCGAAGGGAGGATGGATCGCCGGTGATTGCAGGCTGTCGGGTCATCACTCATCTGTGGAAAATCGCATGGCTTGAATCTCTGGCTGCCATTGATGGGTTGAAAGCTATACCAGATAGGGGTGTTAAAAAATAG

Coding sequence (CDS)

ATGTCGGTCTTGTTCCGTCGCTGTCGATTTGGTCCAGTCGCCGCCGCCGCTCAACCCTCCACCGGTATTGTTTTCTTGAAGATTCGTGTTCGAGCTCTCAGTCACTGTCTTGTGCTGTCCAACAAGAGAATCCATGAATTGGGATGCTGGAAATTGAACTGTGATGCTTCGTGGTGTAATTCAAATCGGCGAGGTGGTCTTGGTTGGATTATTCGAAGGGAGGATGGATCGCCGGTGATTGCAGGCTGTCGGGTCATCACTCATCTGTGGAAAATCGCATGGCTTGAATCTCTGGCTGCCATTGATGGGTTGAAAGCTATACCAGATAGGGGTGTTAAAAAATAG

Protein sequence

MSVLFRRCRFGPVAAAAQPSTGIVFLKIRVRALSHCLVLSNKRIHELGCWKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAIPDRGVKK

Homology

[Close]

BLAST of Spg026449 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-07
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 50  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAIPD 109
           W LN DASW +S  RGG+GWIIR  DG  V+AG R +     +  LE+ A ++GL+ + +
Sbjct: 79  WTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTN 138

Query: 110 RGV 113
            GV
Sbjct: 139 LGV 141

[Close]

BLAST of Spg026449 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 50  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI 108
           WKLN DA+W       G+GWI+R E G  +  GCR+I     I +LE +A  +GL+AI
Sbjct: 263 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAI 320

[Close]

BLAST of Spg026449 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 50  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI 108
           WKLN DA+W       G+GWI+R E G  +  GCR+I     I +LE +A  +GL+AI
Sbjct: 228 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAI 285

[Close]

BLAST of Spg026449 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 50  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAIPD 109
           W LN DASW +S  RGG+GWIIR  DG  V+AG R +     +  LE+ A ++GL+ + +
Sbjct: 79  WTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTN 138

Query: 110 RGV 113
            GV
Sbjct: 139 LGV 141

[Close]

BLAST of Spg026449 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-06
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 50  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI 108
           WKLN DA+W       G+GWI+R E G  +  GCR+I     I +LE +A  +GL+AI
Sbjct: 263 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAI 320

[Close]

BLAST of Spg026449 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-06
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 50  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI 108
           WKLN DA+W       G+GWI+R E G  +  GCR+I     I +LE +A  +GL+AI
Sbjct: 228 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAI 285

The following BLAST results are available for this feature:

BLAST of Spg026449 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	3.5e-07	46.03	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022154990.1	1.1e-05	44.83	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022154991.1	1.1e-05	44.83	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]

BLAST of Spg026449 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg026449 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.7e-07	46.03	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DL64	5.4e-06	44.83	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	5.4e-06	44.83	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Spg026449 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 53..113 e-value: 7.5E-7 score: 29.0
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 49..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg026449.1	Spg026449.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity