Spg026439 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg026439
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold13: 18361631 .. 18362683 (-)
RNA-Seq Expression	Spg026439
Synteny	Spg026439

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAACACGAGCAAGGAAAGAAAGAGAAAGTGAGGAGGAGGAGGTGCCCGTTACCCCTGAAGTTCGGAAAGCTAAAACCAAGAAGAAGAAAACGCCAGAAGAGAAAGAAGCCATACGGAGAAGAAGGCAGCAGAGGGCTGCGGAGCAAGAAGCTATCCAAGAAGGACCAGTGAATGACCCAGATACGGAAGGAATTCAGAATCCTGAGGTAGAACCAATAGTCCAAGATTCGGTGCAAAAGGAGAATGTTGAGAAGAATCAAGAAACACAGGCTGAAGAAGTTCGAGACGAACAGACCGCGGTTGTGCCTGAGGAAGGGGATGAACAGGAAACGATGCAGGAGGCTCATGTTGAGGTCATAATGCCTGAACCACCAAGGCGCCGCCGCATCAAGCGGAAGGCTGGGCGCGTTCAGGTGATTCGGACTGATACCCCATCACCACCATCGTCGGATTCTGAGAAAGAGAAGGCAGAGCGAGAGGAACGAGAGAAAGAAGAAGCTGAGGAAAGAGTGCGAGAAGAAGGAAAGAAGACCGAGGAAGAGATTTTGCAGAAGCGAAGAGAAGACAAGGGCAAAGGTATTGCCGAGGCATCAGGTGCGGTTGACGAGGTTGAGGCACAAGGGTTACCTTTTATTCGCTTCGTCAACAACCTTGCTCGAGCAAAATACCAGGAGATGCTGAAACGGGACTTTATGTTCGAACGAGGATTTGGCAATGAGTTGCCACGGTTCTTGAGGACTGGAATAGAAAACCTCGGCTGGAGGCAATTTTGTGCGAAACCAGAGCCTGTGAATTCCAATTTTGTTCGGGAATTTTACTCAAATCTTGACGATAAGGAAGAATTTCAGGTTATAGTTCGAGGAGTCCCAGTGGATTGGAGCCCATAAGTTGTTAATGAATTGTTTGATCTCCAGGATTTTTCGCATGCAGTCTTCAATGAGATGGTGGTTGCCCCATCTAACGATCAGTTAAGTGCGGCTGTCCGAGAGGTTGGCATTGAGGGGGCCCAATGGAGGTTGTCGCAGACGCGGAAGCGCACATTTTAG

mRNA sequence

ATGGCAAAAACACGAGCAAGGAAAGAAAGAGAAAGTGAGGAGGAGGAGGTGCCCGTTACCCCTGAAGTTCGGAAAGCTAAAACCAAGAAGAAGAAAACGCCAGAAGAGAAAGAAGCCATACGGAGAAGAAGGCAGCAGAGGGCTGCGGAGCAAGAAGCTATCCAAGAAGGACCAGTGAATGACCCAGATACGGAAGGAATTCAGAATCCTGAGGTAGAACCAATAGTCCAAGATTCGGTGCAAAAGGAGAATGTTGAGAAGAATCAAGAAACACAGGCTGAAGAAGTTCGAGACGAACAGACCGCGGTTGTGCCTGAGGAAGGGGATGAACAGGAAACGATGCAGGAGGCTCATGTTGAGGTCATAATGCCTGAACCACCAAGGCGCCGCCGCATCAAGCGGAAGGCTGGGCGCGTTCAGGTGATTCGGACTGATACCCCATCACCACCATCGTCGGATTCTGAGAAAGAGAAGGCAGAGCGAGAGGAACGAGAGAAAGAAGAAGCTGAGGAAAGAGTGCGAGAAGAAGGAAAGAAGACCGAGGAAGAGATTTTGCAGAAGCGAAGAGAAGACAAGGGCAAAGGTATTGCCGAGGCATCAGGTGCGGTTGACGAGGTTGAGGCACAAGGGTTACCTTTTATTCGCTTCGTCAACAACCTTGCTCGAGCAAAATACCAGGAGATGCTGAAACGGGACTTTATGTTCGAACGAGGATTTGGCAATGAGTTGCCACGGTTCTTGAGGACTGGAATAGAAAACCTCGGCTGGAGGCAATTTTGTGCGAAACCAGAGCCTGTGAATTCCAATTTTGTTCGGGAATTTTACTCAAATCTTGACGATAAGGAAGAATTTCAGGATTTTTCGCATGCAGTCTTCAATGAGATGGTGGTTGCCCCATCTAACGATCAGTTAAGTGCGGCTGTCCGAGAGGTTGGCATTGAGGGGGCCCAATGGAGGTTGTCGCAGACGCGGAAGCGCACATTTTAG

Coding sequence (CDS)

ATGGCAAAAACACGAGCAAGGAAAGAAAGAGAAAGTGAGGAGGAGGAGGTGCCCGTTACCCCTGAAGTTCGGAAAGCTAAAACCAAGAAGAAGAAAACGCCAGAAGAGAAAGAAGCCATACGGAGAAGAAGGCAGCAGAGGGCTGCGGAGCAAGAAGCTATCCAAGAAGGACCAGTGAATGACCCAGATACGGAAGGAATTCAGAATCCTGAGGTAGAACCAATAGTCCAAGATTCGGTGCAAAAGGAGAATGTTGAGAAGAATCAAGAAACACAGGCTGAAGAAGTTCGAGACGAACAGACCGCGGTTGTGCCTGAGGAAGGGGATGAACAGGAAACGATGCAGGAGGCTCATGTTGAGGTCATAATGCCTGAACCACCAAGGCGCCGCCGCATCAAGCGGAAGGCTGGGCGCGTTCAGGTGATTCGGACTGATACCCCATCACCACCATCGTCGGATTCTGAGAAAGAGAAGGCAGAGCGAGAGGAACGAGAGAAAGAAGAAGCTGAGGAAAGAGTGCGAGAAGAAGGAAAGAAGACCGAGGAAGAGATTTTGCAGAAGCGAAGAGAAGACAAGGGCAAAGGTATTGCCGAGGCATCAGGTGCGGTTGACGAGGTTGAGGCACAAGGGTTACCTTTTATTCGCTTCGTCAACAACCTTGCTCGAGCAAAATACCAGGAGATGCTGAAACGGGACTTTATGTTCGAACGAGGATTTGGCAATGAGTTGCCACGGTTCTTGAGGACTGGAATAGAAAACCTCGGCTGGAGGCAATTTTGTGCGAAACCAGAGCCTGTGAATTCCAATTTTGTTCGGGAATTTTACTCAAATCTTGACGATAAGGAAGAATTTCAGGATTTTTCGCATGCAGTCTTCAATGAGATGGTGGTTGCCCCATCTAACGATCAGTTAAGTGCGGCTGTCCGAGAGGTTGGCATTGAGGGGGCCCAATGGAGGTTGTCGCAGACGCGGAAGCGCACATTTTAG

Protein sequence

MAKTRARKERESEEEEVPVTPEVRKAKTKKKKTPEEKEAIRRRRQQRAAEQEAIQEGPVNDPDTEGIQNPEVEPIVQDSVQKENVEKNQETQAEEVRDEQTAVVPEEGDEQETMQEAHVEVIMPEPPRRRRIKRKAGRVQVIRTDTPSPPSSDSEKEKAEREEREKEEAEERVREEGKKTEEEILQKRREDKGKGIAEASGAVDEVEAQGLPFIRFVNNLARAKYQEMLKRDFMFERGFGNELPRFLRTGIENLGWRQFCAKPEPVNSNFVREFYSNLDDKEEFQDFSHAVFNEMVVAPSNDQLSAAVREVGIEGAQWRLSQTRKRTF

Homology

The following BLAST results are available for this feature:

BLAST of Spg026439 vs.


Match Name	E-value	Identity	Description

BLAST of Spg026439 vs.


Match Name	E-value	Identity	Description

BLAST of Spg026439 vs.


Match Name	E-value	Identity	Description

BLAST of Spg026439 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 152..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg026439.1	Spg026439.1	mRNA