Spg026417 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg026417
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold13: 17172210 .. 17173041 (+)
RNA-Seq ExpressionSpg026417
SyntenySpg026417
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGGTAGTAAACGTTGGTTGTACTAGCTGTGCCCTACACAACGTTGATTTTTCATGTTAGCTAAAACGTTTTATATACTTGATATGCCCTGCTAGATTTTAATGAGGTACTTGCGGAATATTTGAGAAAGCTTTTATCGTTACATGTTTATGTTTAACGCTTTGATTGAACAGATTTATACGTTTAAAGGTTTATCACGTGTTCTGATTTACGGATTTACAGTTTTAAATTTAGTCACTCACTAGGCTTCGTAGCTCACTCTTTCAAAATGTTTTACCACTTTCCAGGTAGAGATCGAGCTCCCGGTGTCTGATACACTGCCAACGTCTGCTGAAAGTACCAAGTCGACTTTCAGTACGTGGGTGGAGTTGTACATTGAGTCTTTTTGTATTGTAAATATCTTTGTAAGAACTGGATAGTTTATGGTTGTGTAAGCACTAGATGTCGTGGTTGTGTAAACCCTAGTTGGATACATTTTTCGTTGTAATATCTCTACCAGATTATTTTCCAAACCAAGTTATGTCAGGGCTGCATCCCATGTATGTCTAAAGTCTTCAGGGATTCCGCTGTGTTGCGTTACATGTAAAGTATTTTATTTCTAAGATTTGTATGTTTATCAGGTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTGGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGTGGGGGTGTGACAATAACTCCCCAGACTTCACAACTCCAGACTTCACAACTCCACCTCGTTGCCCCAAACACCCCCTTATAG

mRNA sequence

ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGGTAGAGATCGAGCTCCCGGTGTCTGATACACTGCCAACGTCTGCTGAAAGTACCAAGTCGACTTTCAGTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTGGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGTGGGGGTGTGACAATAACTCCCCAGACTTCACAACTCCAGACTTCACAACTCCACCTCGTTGCCCCAAACACCCCCTTATAG

Coding sequence (CDS)

ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGGTAGAGATCGAGCTCCCGGTGTCTGATACACTGCCAACGTCTGCTGAAAGTACCAAGTCGACTTTCAGTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTGGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGTGGGGGTGTGACAATAACTCCCCAGACTTCACAACTCCAGACTTCACAACTCCACCTCGTTGCCCCAAACACCCCCTTATAG

Protein sequence

MGVLGGPHYIVEVEIELPVSDTLPTSAESTKSTFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTITPQTSQLQTSQLHLVAPNTPL
Homology
[Close]
BLAST of Spg026417 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 43/109 (39.45%), Postives = 53/109 (48.62%), Query Frame = 0 

Query: 2   GVLGGPHYIV-----------------EVEIELPVSDTLPTSAESTKSTFS--------- 61
           GV GGPHYIV                  +EIEL V DTLPTSAES+ S  S         
Sbjct: 221 GVPGGPHYIVGLVNVGCTGRVLHHIDRSLEIELLVPDTLPTSAESSGSNSSTWLEFDFEL 280

Query: 62  ----SAIQQGQQVSLE--------EDDVCWLHAISLTKLAGSLGGGVTI 73
               S ++   ++  E        E+DVCWLHA+   K+AG  GGGVT+
Sbjct: 281 FYKPSDVRTASRICWEVRSAGIVRENDVCWLHAVFRAKIAGGSGGGVTV 329

[Close]
BLAST of Spg026417 vs. NCBI nr
Match: KAA0037515.1 (uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK01990.1 uncharacterized protein E5676_scaffold808G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-06
Identity = 35/59 (59.32%), Postives = 38/59 (64.41%), Query Frame = 0 

Query: 13  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT 72
           VEIELPVSDTLP SAES+ S   SA        + EDDVCWLH +   K AG  GGGVT
Sbjct: 133 VEIELPVSDTLPMSAESSGSNSRSA------GIVREDDVCWLHVVFRVKTAGGPGGGVT 185

[Close]
BLAST of Spg026417 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-06
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 0 

Query: 13  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKL 72
           VEIELPV DTLPTSAES++S  S+ ++   +            + EDDVCWLHA+   K 
Sbjct: 34  VEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKT 93

Query: 73  AGSLGGGVTITPQTSQLQTSQ 84
           AG  GGGV   P + + + +Q
Sbjct: 94  AGGPGGGVMPPPTSKRRRPNQ 114

[Close]
BLAST of Spg026417 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-06
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 0 

Query: 13  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKL 72
           VEIELPV DTLPTSAES++S  S+ ++   +            + EDDVCWLHA+   K 
Sbjct: 34  VEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKT 93

Query: 73  AGSLGGGVTITPQTSQLQTSQ 84
           AG  GGGV   P + + + +Q
Sbjct: 94  AGGPGGGVMPPPTSKRRRPNQ 114

[Close]
BLAST of Spg026417 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-06
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 13  VEIELPVSDTLPTSAESTKS-TFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT 72
           VEIELPV DTLPTSAES +S + S+ I +G       DDVCWLHA+   K AG  GGGVT
Sbjct: 88  VEIELPVPDTLPTSAESFESNSRSTGIVRG-------DDVCWLHAVFRAKTAGGPGGGVT 140

[Close]
BLAST of Spg026417 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 43/109 (39.45%), Postives = 53/109 (48.62%), Query Frame = 0 

Query: 2   GVLGGPHYIV-----------------EVEIELPVSDTLPTSAESTKSTFS--------- 61
           GV GGPHYIV                  +EIEL V DTLPTSAES+ S  S         
Sbjct: 221 GVPGGPHYIVGLVNVGCTGRVLHHIDRSLEIELLVPDTLPTSAESSGSNSSTWLEFDFEL 280

Query: 62  ----SAIQQGQQVSLE--------EDDVCWLHAISLTKLAGSLGGGVTI 73
               S ++   ++  E        E+DVCWLHA+   K+AG  GGGVT+
Sbjct: 281 FYKPSDVRTASRICWEVRSAGIVRENDVCWLHAVFRAKIAGGSGGGVTV 329

[Close]
BLAST of Spg026417 vs. ExPASy TrEMBL
Match: A0A5D3BSA6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001020 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 35/59 (59.32%), Postives = 38/59 (64.41%), Query Frame = 0 

Query: 13  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT 72
           VEIELPVSDTLP SAES+ S   SA        + EDDVCWLH +   K AG  GGGVT
Sbjct: 133 VEIELPVSDTLPMSAESSGSNSRSA------GIVREDDVCWLHVVFRVKTAGGPGGGVT 185

[Close]
BLAST of Spg026417 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 0 

Query: 13  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKL 72
           VEIELPV DTLPTSAES++S  S+ ++   +            + EDDVCWLHA+   K 
Sbjct: 34  VEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKT 93

Query: 73  AGSLGGGVTITPQTSQLQTSQ 84
           AG  GGGV   P + + + +Q
Sbjct: 94  AGGPGGGVMPPPTSKRRRPNQ 114

[Close]
BLAST of Spg026417 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 0 

Query: 13  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKL 72
           VEIELPV DTLPTSAES++S  S+ ++   +            + EDDVCWLHA+   K 
Sbjct: 34  VEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKT 93

Query: 73  AGSLGGGVTITPQTSQLQTSQ 84
           AG  GGGV   P + + + +Q
Sbjct: 94  AGGPGGGVMPPPTSKRRRPNQ 114

[Close]
BLAST of Spg026417 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.6e-06
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 13  VEIELPVSDTLPTSAESTKS-TFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT 72
           VEIELPV DTLPTSAES +S + S+ I +G       DDVCWLHA+   K AG  GGGVT
Sbjct: 88  VEIELPVPDTLPTSAESFESNSRSTGIVRG-------DDVCWLHAVFRAKTAGGPGGGVT 140

The following BLAST results are available for this feature:
BLAST of Spg026417 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08801.12.4e-0639.45hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa][more]
KAA0037515.14.1e-0659.32uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK... [more]
TYK27998.14.1e-0644.44reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.14.1e-0644.44reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0060199.15.3e-0660.00uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9... [more]
BLAST of Spg026417 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg026417 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CAC61.2e-0639.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BSA62.0e-0659.32Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DX392.0e-0644.44Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG92.0e-0644.44Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5D3BAD12.6e-0660.00Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Spg026417 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg026417.1Spg026417.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity