Spg026404 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg026404
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DExH-box ATP-dependent RNA helicase DExH9
Location	scaffold13: 15458823 .. 15459842 (-)
RNA-Seq Expression	Spg026404
Synteny	Spg026404

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGTTTGCTGAGGATTCTGCTCTAATTATCGGCTATTTTCAAAGGGAGGCACTTTTCATTAATTTTTCACTCATGTTAAAATGTTCCTCTAATTATTGTATACCTCTCTCTCAGGAGTTGAAAAAAATACTCCAATTTGAGTTAGTTGCAAAGGGGCTGTAGTTACAAAAAGAATTAAAAATAAAGCATGAATAAGAAGAATGATATTTAACTATGTGGAAAACATCTCATCCCATCCCTTTCTATCTCATTGAAGATCCGTGAGTTCCTTTTTAACCATATGATCCATGGGAGTCCCTTTATCACATAAATTCAGAGAATTTTTAGGCTTTTAACTTTCCCTGTATACCTATGTCTACTAAGCAGCTGCACCATATTATCCTTTGTGGAGGATCCAGTAACACATTGAAGATTGAACCATATTGTGGAATAATATTTGATATAAACATACTAATTCTAGTTATTACTGCAGAAACAAGTGAAAAACCTTGAAGAGGAGAGGGATTCCATAGTGATTGAAGAGGAAGATAGTTTGAAGAATTATTATGATTTGCTAAAGCAGTACAAAAGTTTCAAGAAGGATATTCGTGATATTGTGTTGTCTCCTAGATACTGCTTACCATTTCTGCAACCTGGCAGGCTTGTATCTATTGAATGCAACAGTAATGATGAGGTTTCTTCAACTTTCTCCACTGAGGACCAGGTTACGTGGGGATTGATAATTAATTTTCAAAGGGTGAAAGGTATTTCTGAAGGTGATGTATCGATAATCTCTCTTACATATGTATTCTTCTACTCAAATTTTAGCTTATTAGTCTTCTGAATCTGAACTTCAATTTGTGTTCCAGAGGATGCTAGCATGAAACCAGAATCTGCAAACTACACTGTGGACGTTCTTACAAGATGCATTATCAGTAAAGATGGTATAGGGAAAAAACATGTCAAGATTGTTCAATTGAAAGAGCATGGAGAACCTCATGTCGTTTCCATTTCAATCTCTCAGGTATGGAGTTAG

mRNA sequence

ATGAAACAAGTGAAAAACCTTGAAGAGGAGAGGGATTCCATAGTGATTGAAGAGGAAGATAGTTTGAAGAATTATTATGATTTGCTAAAGCAGTACAAAAGTTTCAAGAAGGATATTCGTGATATTGTGTTGTCTCCTAGATACTGCTTACCATTTCTGCAACCTGGCAGGCTTGTATCTATTGAATGCAACAGTAATGATGAGGTTTCTTCAACTTTCTCCACTGAGGACCAGGTTACGTGGGGATTGATAATTAATTTTCAAAGGGTGAAAGGTATTTCTGAAGAGGATGCTAGCATGAAACCAGAATCTGCAAACTACACTGTGGACGTTCTTACAAGATGCATTATCAGTAAAGATGGTATAGGGAAAAAACATGTCAAGATTGTTCAATTGAAAGAGCATGGAGAACCTCATGTCGTTTCCATTTCAATCTCTCAGGTATGGAGTTAG

Coding sequence (CDS)

ATGAAACAAGTGAAAAACCTTGAAGAGGAGAGGGATTCCATAGTGATTGAAGAGGAAGATAGTTTGAAGAATTATTATGATTTGCTAAAGCAGTACAAAAGTTTCAAGAAGGATATTCGTGATATTGTGTTGTCTCCTAGATACTGCTTACCATTTCTGCAACCTGGCAGGCTTGTATCTATTGAATGCAACAGTAATGATGAGGTTTCTTCAACTTTCTCCACTGAGGACCAGGTTACGTGGGGATTGATAATTAATTTTCAAAGGGTGAAAGGTATTTCTGAAGAGGATGCTAGCATGAAACCAGAATCTGCAAACTACACTGTGGACGTTCTTACAAGATGCATTATCAGTAAAGATGGTATAGGGAAAAAACATGTCAAGATTGTTCAATTGAAAGAGCATGGAGAACCTCATGTCGTTTCCATTTCAATCTCTCAGGTATGGAGTTAG

Protein sequence

MKQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQVWS

Homology

[Close]

BLAST of Spg026404 vs. NCBI nr
Match: XP_038874775.1 (DExH-box ATP-dependent RNA helicase DExH9 isoform X2 [Benincasa hispida])

HSP 1 Score: 275.0 bits (702), Expect = 3.8e-70
Identity = 134/147 (91.16%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQVK+LEEERDSIVIEEED+LKNYYDLLKQYKS KKDIRDIVLSPRYCLPFLQPGRLVSI
Sbjct: 434 KQVKSLEEERDSIVIEEEDNLKNYYDLLKQYKSLKKDIRDIVLSPRYCLPFLQPGRLVSI 493

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           ECNSNDE+SSTFS +DQVTWGLIINFQRVKG+SEEDASMKPESANY+VDVLTRCI+SKDG
Sbjct: 494 ECNSNDEISSTFSIKDQVTWGLIINFQRVKGVSEEDASMKPESANYSVDVLTRCIVSKDG 553

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQV 149
           IGKK+VKIV+LKEHGEPHVVSI ISQ+
Sbjct: 554 IGKKNVKIVRLKEHGEPHVVSIPISQI 580

[Close]

BLAST of Spg026404 vs. NCBI nr
Match: XP_038874774.1 (DExH-box ATP-dependent RNA helicase DExH9 isoform X1 [Benincasa hispida])

HSP 1 Score: 275.0 bits (702), Expect = 3.8e-70
Identity = 134/147 (91.16%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQVK+LEEERDSIVIEEED+LKNYYDLLKQYKS KKDIRDIVLSPRYCLPFLQPGRLVSI
Sbjct: 542 KQVKSLEEERDSIVIEEEDNLKNYYDLLKQYKSLKKDIRDIVLSPRYCLPFLQPGRLVSI 601

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           ECNSNDE+SSTFS +DQVTWGLIINFQRVKG+SEEDASMKPESANY+VDVLTRCI+SKDG
Sbjct: 602 ECNSNDEISSTFSIKDQVTWGLIINFQRVKGVSEEDASMKPESANYSVDVLTRCIVSKDG 661

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQV 149
           IGKK+VKIV+LKEHGEPHVVSI ISQ+
Sbjct: 662 IGKKNVKIVRLKEHGEPHVVSIPISQI 688

[Close]

BLAST of Spg026404 vs. NCBI nr
Match: XP_008458145.1 (PREDICTED: DExH-box ATP-dependent RNA helicase DExH9 [Cucumis melo] >TYK14014.1 DExH-box ATP-dependent RNA helicase DExH9 [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 131/147 (89.12%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQVK+LEEERDSIVIEEED+LKNYYDLL QYKS KKDIRDIVLSPRYCLPFLQPGRLVSI
Sbjct: 542 KQVKSLEEERDSIVIEEEDNLKNYYDLLNQYKSLKKDIRDIVLSPRYCLPFLQPGRLVSI 601

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           ECNSNDE+SSTFS +DQVTWGLIINFQ+VKG+SEEDASMKPESANYTVDVLTRCI+SKDG
Sbjct: 602 ECNSNDEISSTFSIKDQVTWGLIINFQKVKGVSEEDASMKPESANYTVDVLTRCIVSKDG 661

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQV 149
           +GKK+V+I+QLKEHGEPHVVSI ISQ+
Sbjct: 662 VGKKNVRIIQLKEHGEPHVVSIPISQI 688

[Close]

BLAST of Spg026404 vs. NCBI nr
Match: XP_004140482.1 (DExH-box ATP-dependent RNA helicase DExH9 [Cucumis sativus] >KGN46581.1 hypothetical protein Csa_004956 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQVK+LEEERDSIVIEEEDSLKNYYDLL QYKS KKDIR+IVLSPRYCLPFLQPGRLVSI
Sbjct: 542 KQVKSLEEERDSIVIEEEDSLKNYYDLLNQYKSLKKDIRNIVLSPRYCLPFLQPGRLVSI 601

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           ECN NDE+SSTFS +DQVTWGLIINFQRVKG+SEEDASMKPESANYTVDVLTRCI+SKDG
Sbjct: 602 ECNRNDEISSTFSIKDQVTWGLIINFQRVKGVSEEDASMKPESANYTVDVLTRCIVSKDG 661

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQV 149
           IGKK+V+I+QLKEHGEPHVVSI ISQ+
Sbjct: 662 IGKKNVRIIQLKEHGEPHVVSIPISQI 688

[Close]

BLAST of Spg026404 vs. NCBI nr
Match: KAG7013780.1 (DExH-box ATP-dependent RNA helicase DExH9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 129/147 (87.76%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQVK+LEEERDSIVIEEED+LKNYYDLLKQYKS KKDIRDIVLSPRYCLPFLQPGRL+SI
Sbjct: 517 KQVKSLEEERDSIVIEEEDNLKNYYDLLKQYKSLKKDIRDIVLSPRYCLPFLQPGRLISI 576

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           EC+SN+E+SSTFS +DQ TWGLIINFQR+KG+SE+DASMKPESANYTVDVLTRC++SKDG
Sbjct: 577 ECDSNNEISSTFSIKDQFTWGLIINFQRMKGVSEDDASMKPESANYTVDVLTRCVVSKDG 636

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQV 149
           IGKK+VKIVQLKEHGEPHVVSI ISQ+
Sbjct: 637 IGKKNVKIVQLKEHGEPHVVSIPISQI 663

[Close]

BLAST of Spg026404 vs. ExPASy Swiss-Prot
Match: Q9XIF2 (DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR4 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-52
Identity = 95/149 (63.76%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQ+K+LEEERDS+VIEEE+SLKNYY+L+ QYKS KKDIR+IV +P+YCLPFL P R V +
Sbjct: 537 KQIKSLEEERDSLVIEEEESLKNYYNLILQYKSLKKDIREIVFTPKYCLPFLLPNRAVCL 596

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           +C ++DE   +FS EDQ TWG+I+ F +VK +SE+D S +PE ANYTVDVLTRC++SKDG
Sbjct: 597 DCTNDDEEPQSFSIEDQDTWGVIMKFNKVKSLSEDDDSRRPEDANYTVDVLTRCMVSKDG 656

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQVWS 151
           +GKK VK V +KE GEP VV++ +SQ+ S
Sbjct: 657 VGKKKVKAVPIKERGEPVVVTVPLSQIKS 685

[Close]

BLAST of Spg026404 vs. ExPASy Swiss-Prot
Match: P42285 (Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3)

HSP 1 Score: 82.8 bits (203), Expect = 3.6e-15
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 0


Query: 1   MKQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVS 60
           +++VKN EE+ + IVI  E+S+  YY + +Q     K+I + +  P+YCLPFLQPGRLV 
Sbjct: 602 VEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVK 661

Query: 61  IECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKD 120
           ++ N  D+            WG+++NF +   +      + P    Y V+VL RC  SK+
Sbjct: 662 VK-NEGDDFG----------WGVVVNFSKKSNVKPNSGELDP---LYVVEVLLRC--SKE 721

Query: 121 GI---GKKHVKIVQLKEHGEPHVVSISI 146
            +     +  K  +  E GE  VV + +
Sbjct: 722 SLKNSATEAAKPAKPDEKGEMQVVPVLV 733

[Close]

BLAST of Spg026404 vs. ExPASy Swiss-Prot
Match: Q9CZU3 (Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.1e-15
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 0


Query: 1   MKQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVS 60
           +++VKN EE+ + IVI  E+++  YY + +Q     K+I + +  P+YCLPFLQPGRLV 
Sbjct: 600 VEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVK 659

Query: 61  IECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKD 120
           ++ N  D+            WG+++NF +   +      + P    Y V+VL RC  SK+
Sbjct: 660 VK-NEGDDFG----------WGVVVNFSKKSNVKPNSGELDP---LYVVEVLLRC--SKE 719

Query: 121 GI---GKKHVKIVQLKEHGEPHVVSISI 146
            +     +  K  +  E GE  VV + +
Sbjct: 720 SLKNSATEAAKPAKPDEKGEMQVVPVLV 731

[Close]

BLAST of Spg026404 vs. ExPASy Swiss-Prot
Match: P47047 (ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MTR4 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 34/112 (30.36%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           K++  L+++ D I +E+E+++K Y+++ +  K +++D+R +V  P   L FLQPGRLV I
Sbjct: 623 KKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEI 682

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDAS-MKPESANYTVDVL 113
             N  D             WG +++F   K I++ + S +  +  +Y V+V+
Sbjct: 683 SVNGKDNYG----------WGAVVDF--AKRINKRNPSAVYTDHESYIVNVV 722

[Close]

BLAST of Spg026404 vs. ExPASy Swiss-Prot
Match: O14232 (ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mtr4 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.0e-06
Identity = 29/97 (29.90%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 3   QVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIE 62
           +++  ++  DS  I +E  L+ Y+ L  Q + ++ D+R +V  P +CL FLQ GRLV ++
Sbjct: 672 KLEESQQHYDSFTILDERPLEEYHTLKTQLERYRTDVRTVVNHPNFCLSFLQGGRLVRVK 731

Query: 63  CNSNDEVSSTFSTEDQVTWGLIINFQR---VKGISEE 97
             + D             WG+++N  +    KG S E
Sbjct: 732 VGNED-----------FDWGVVVNVSKRPLPKGQSNE 757

[Close]

BLAST of Spg026404 vs. ExPASy TrEMBL
Match: A0A5D3CSJ2 (DExH-box ATP-dependent RNA helicase DExH9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00110 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.0e-70
Identity = 131/147 (89.12%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQVK+LEEERDSIVIEEED+LKNYYDLL QYKS KKDIRDIVLSPRYCLPFLQPGRLVSI
Sbjct: 542 KQVKSLEEERDSIVIEEEDNLKNYYDLLNQYKSLKKDIRDIVLSPRYCLPFLQPGRLVSI 601

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           ECNSNDE+SSTFS +DQVTWGLIINFQ+VKG+SEEDASMKPESANYTVDVLTRCI+SKDG
Sbjct: 602 ECNSNDEISSTFSIKDQVTWGLIINFQKVKGVSEEDASMKPESANYTVDVLTRCIVSKDG 661

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQV 149
           +GKK+V+I+QLKEHGEPHVVSI ISQ+
Sbjct: 662 VGKKNVRIIQLKEHGEPHVVSIPISQI 688

[Close]

BLAST of Spg026404 vs. ExPASy TrEMBL
Match: A0A1S3C6P7 (DExH-box ATP-dependent RNA helicase DExH9 OS=Cucumis melo OX=3656 GN=LOC103497670 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.0e-70
Identity = 131/147 (89.12%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQVK+LEEERDSIVIEEED+LKNYYDLL QYKS KKDIRDIVLSPRYCLPFLQPGRLVSI
Sbjct: 542 KQVKSLEEERDSIVIEEEDNLKNYYDLLNQYKSLKKDIRDIVLSPRYCLPFLQPGRLVSI 601

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           ECNSNDE+SSTFS +DQVTWGLIINFQ+VKG+SEEDASMKPESANYTVDVLTRCI+SKDG
Sbjct: 602 ECNSNDEISSTFSIKDQVTWGLIINFQKVKGVSEEDASMKPESANYTVDVLTRCIVSKDG 661

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQV 149
           +GKK+V+I+QLKEHGEPHVVSI ISQ+
Sbjct: 662 VGKKNVRIIQLKEHGEPHVVSIPISQI 688

[Close]

BLAST of Spg026404 vs. ExPASy TrEMBL
Match: A0A0A0KFR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109760 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQVK+LEEERDSIVIEEEDSLKNYYDLL QYKS KKDIR+IVLSPRYCLPFLQPGRLVSI
Sbjct: 542 KQVKSLEEERDSIVIEEEDSLKNYYDLLNQYKSLKKDIRNIVLSPRYCLPFLQPGRLVSI 601

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           ECN NDE+SSTFS +DQVTWGLIINFQRVKG+SEEDASMKPESANYTVDVLTRCI+SKDG
Sbjct: 602 ECNRNDEISSTFSIKDQVTWGLIINFQRVKGVSEEDASMKPESANYTVDVLTRCIVSKDG 661

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQV 149
           IGKK+V+I+QLKEHGEPHVVSI ISQ+
Sbjct: 662 IGKKNVRIIQLKEHGEPHVVSIPISQI 688

[Close]

BLAST of Spg026404 vs. ExPASy TrEMBL
Match: A0A6J1H3H0 (DExH-box ATP-dependent RNA helicase DExH9-like OS=Cucurbita moschata OX=3662 GN=LOC111460149 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.0e-68
Identity = 129/147 (87.76%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQVK+LEEERDSIVIEEED+LKNYYDLLKQYKS KKDIRDIVLSPRYCLPFLQPGRL+SI
Sbjct: 542 KQVKSLEEERDSIVIEEEDNLKNYYDLLKQYKSLKKDIRDIVLSPRYCLPFLQPGRLISI 601

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           EC+SN+E+SSTFS +DQ TWGLIINFQR+KG+SE+DASMKPESANYTVDVLTRC++SKDG
Sbjct: 602 ECDSNNEISSTFSIKDQFTWGLIINFQRMKGVSEDDASMKPESANYTVDVLTRCVVSKDG 661

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQV 149
           IGKK+VKIVQLKEHGEPHVVSI ISQ+
Sbjct: 662 IGKKNVKIVQLKEHGEPHVVSIPISQI 688

[Close]

BLAST of Spg026404 vs. ExPASy TrEMBL
Match: A0A6J1L2B4 (DExH-box ATP-dependent RNA helicase DExH9-like OS=Cucurbita maxima OX=3661 GN=LOC111499210 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.2e-68
Identity = 128/147 (87.07%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQVK+LEEERDSIVIEEED+LKNYYDLLKQYKS KKDIRDIVLSPRYCLP+LQPGRL+SI
Sbjct: 542 KQVKSLEEERDSIVIEEEDNLKNYYDLLKQYKSLKKDIRDIVLSPRYCLPYLQPGRLISI 601

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           EC+SN+E+SSTFS +DQ TWGLIINFQR+KG+SE+DASMKPESANYTVDVLTRC++SKDG
Sbjct: 602 ECDSNNEISSTFSIKDQFTWGLIINFQRMKGVSEDDASMKPESANYTVDVLTRCVVSKDG 661

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQV 149
           IGKK+VKIVQLKEHGEPHVVSI ISQ+
Sbjct: 662 IGKKNVKIVQLKEHGEPHVVSIPISQI 688

[Close]

BLAST of Spg026404 vs. TAIR 10
Match: AT1G59760.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 95/149 (63.76%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 2   KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSI 61
           KQ+K+LEEERDS+VIEEE+SLKNYY+L+ QYKS KKDIR+IV +P+YCLPFL P R V +
Sbjct: 537 KQIKSLEEERDSLVIEEEESLKNYYNLILQYKSLKKDIREIVFTPKYCLPFLLPNRAVCL 596

Query: 62  ECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVDVLTRCIISKDG 121
           +C ++DE   +FS EDQ TWG+I+ F +VK +SE+D S +PE ANYTVDVLTRC++SKDG
Sbjct: 597 DCTNDDEEPQSFSIEDQDTWGVIMKFNKVKSLSEDDDSRRPEDANYTVDVLTRCMVSKDG 656

Query: 122 IGKKHVKIVQLKEHGEPHVVSISISQVWS 151
           +GKK VK V +KE GEP VV++ +SQ+ S
Sbjct: 657 VGKKKVKAVPIKERGEPVVVTVPLSQIKS 685

The following BLAST results are available for this feature:

BLAST of Spg026404 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874775.1	3.8e-70	91.16	DExH-box ATP-dependent RNA helicase DExH9 isoform X2 [Benincasa hispida]	[more]
XP_038874774.1	3.8e-70	91.16	DExH-box ATP-dependent RNA helicase DExH9 isoform X1 [Benincasa hispida]	[more]
XP_008458145.1	1.4e-69	89.12	PREDICTED: DExH-box ATP-dependent RNA helicase DExH9 [Cucumis melo] >TYK14014.1 ...	[more]
XP_004140482.1	3.2e-69	89.80	DExH-box ATP-dependent RNA helicase DExH9 [Cucumis sativus] >KGN46581.1 hypothet...	[more]
KAG7013780.1	2.1e-68	87.76	DExH-box ATP-dependent RNA helicase DExH9 [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of Spg026404 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIF2	2.2e-52	63.76	DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR...	[more]
P42285	3.6e-15	33.11	Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3	[more]
Q9CZU3	8.1e-15	32.43	Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1	[more]
P47047	1.7e-09	30.36	ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 ...	[more]
O14232	4.0e-06	29.90	ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]

BLAST of Spg026404 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSJ2	7.0e-70	89.12	DExH-box ATP-dependent RNA helicase DExH9 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3C6P7	7.0e-70	89.12	DExH-box ATP-dependent RNA helicase DExH9 OS=Cucumis melo OX=3656 GN=LOC10349767...	[more]
A0A0A0KFR7	1.6e-69	89.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109760 PE=4 SV=1	[more]
A0A6J1H3H0	1.0e-68	87.76	DExH-box ATP-dependent RNA helicase DExH9-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1L2B4	2.2e-68	87.07	DExH-box ATP-dependent RNA helicase DExH9-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Spg026404 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G59760.1	1.5e-53	63.76	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1500.20		coord: 1..79 e-value: 4.7E-12 score: 48.1
IPR025696	rRNA-processing arch domain	PFAM	PF13234	rRNA_proc-arch	coord: 2..148 e-value: 1.3E-31 score: 110.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg026404.1	Spg026404.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity