Spg026199 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg026199
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	rubisco accumulation factor 1.1, chloroplastic-like
Location	scaffold7: 2732968 .. 2733258 (+)
RNA-Seq Expression	Spg026199
Synteny	Spg026199

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAGCCAGAGGCGCAGACGGCGGCGTTGGAGGACGCGTTGAAAGTGGTGGTGACGGAGGGGGCGAAGAGTCTGATTGTTAGGGATTTGGAGGGGGAAGGAGAGGGGAAAGAGGGCATAGAAGAGGACATTGTTAAAAAAAAACAGAAGAAAGAAAAGAAAGGAGAAGAAGAGAAGAAGAAGAAAGAAGAAAAAAAAATATTCCGGCGGCCGCCGCCGTCGCCGGCAGCCGGCGGCGACCGGCCACCGGAGCTGAAGAAGAAGGTGATGGGGGAAGGAAGAAGATAA

mRNA sequence

ATGAATCAGCCAGAGGCGCAGACGGCGGCGTTGGAGGACGCGTTGAAAGTGGTGGTGACGGAGGGGGCGAAGAGTCTGATTGTTAGGGATTTGGAGGGGGAAGGAGAGGGGAAAGAGGGCATAGAAGAGGACATTGTTAAAAAAAAACAGAAGAAAGAAAAGAAAGGAGAAGAAGAGAAGAAGAAGAAAGAAGAAAAAAAAATATTCCGGCGGCCGCCGCCGTCGCCGGCAGCCGGCGGCGACCGGCCACCGGAGCTGAAGAAGAAGGTGATGGGGGAAGGAAGAAGATAA

Coding sequence (CDS)

ATGAATCAGCCAGAGGCGCAGACGGCGGCGTTGGAGGACGCGTTGAAAGTGGTGGTGACGGAGGGGGCGAAGAGTCTGATTGTTAGGGATTTGGAGGGGGAAGGAGAGGGGAAAGAGGGCATAGAAGAGGACATTGTTAAAAAAAAACAGAAGAAAGAAAAGAAAGGAGAAGAAGAGAAGAAGAAGAAAGAAGAAAAAAAAATATTCCGGCGGCCGCCGCCGTCGCCGGCAGCCGGCGGCGACCGGCCACCGGAGCTGAAGAAGAAGGTGATGGGGGAAGGAAGAAGATAA

Protein sequence

MNQPEAQTAALEDALKVVVTEGAKSLIVRDLEGEGEGKEGIEEDIVKKKQKKEKKGEEEKKKKEEKKIFRRPPPSPAAGGDRPPELKKKVMGEGRR

Homology

[Close]

BLAST of Spg026199 vs. NCBI nr
Match: XP_022933155.1 (rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-06
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 2   NQPEAQTAALEDALKVVVTEGAKSLIVRDLEGEGEGKEGIEEDI 46
           N  EA+TAALEDALKV VTE A+SLIVRDLE EGEGK+ +EE+I
Sbjct: 232 NMSEARTAALEDALKVAVTEEARSLIVRDLEREGEGKDEVEEEI 275

[Close]

BLAST of Spg026199 vs. NCBI nr
Match: XP_022965491.1 (rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 60.5 bits (145), Expect = 9.4e-06
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 2   NQPEAQTAALEDALKVVVTEGAKSLIVRDLEGEGEGKEGIEEDI 46
           N  EA+TAAL DALKV VTE A+SLIVRDLE EGEGK+G EE+I
Sbjct: 265 NMSEARTAALADALKVAVTEEARSLIVRDLEREGEGKDGAEEEI 308

[Close]

BLAST of Spg026199 vs. NCBI nr
Match: KAG6588314.1 (Rubisco accumulation factor 1.2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020875.1 Rubisco accumulation factor 1.2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 2   NQPEAQTAALEDALKVVVTEGAKSLIVRDLEGEGEGKEGIEEDI 46
           N  EA+TAALEDALKV VTE A+SLIVRDLE EGEGK+  EE+I
Sbjct: 232 NMSEARTAALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEI 275

[Close]

BLAST of Spg026199 vs. NCBI nr
Match: XP_038880540.1 (rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-05
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 2   NQPEAQTAALEDALKVVVTEGAKSLIVRDLEGEGEGKEGIEEDI 46
           N  E +TAALE+ALKVVVTE A+ LIV DLEG+G+GKEG+EE+I
Sbjct: 231 NPSEPRTAALEEALKVVVTEKARDLIVGDLEGKGDGKEGVEEEI 274

[Close]

BLAST of Spg026199 vs. NCBI nr
Match: XP_008462710.1 (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo])

HSP 1 Score: 53.9 bits (128), Expect = 8.8e-04
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2   NQPEAQTAALEDALKVVVTEGAKSLIVRDLEGEGEGKEGIEED 45
           N  E +TAALE+ALKVVVTE A++LIV DLE +G+GK+G+EE+
Sbjct: 234 NSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEE 276

[Close]

BLAST of Spg026199 vs. ExPASy TrEMBL
Match: A0A6J1F451 (rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439956 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 2   NQPEAQTAALEDALKVVVTEGAKSLIVRDLEGEGEGKEGIEEDI 46
           N  EA+TAALEDALKV VTE A+SLIVRDLE EGEGK+ +EE+I
Sbjct: 232 NMSEARTAALEDALKVAVTEEARSLIVRDLEREGEGKDEVEEEI 275

[Close]

BLAST of Spg026199 vs. ExPASy TrEMBL
Match: A0A6J1HLU0 (rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465376 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.5e-06
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 2   NQPEAQTAALEDALKVVVTEGAKSLIVRDLEGEGEGKEGIEEDI 46
           N  EA+TAAL DALKV VTE A+SLIVRDLE EGEGK+G EE+I
Sbjct: 265 NMSEARTAALADALKVAVTEEARSLIVRDLEREGEGKDGAEEEI 308

[Close]

BLAST of Spg026199 vs. ExPASy TrEMBL
Match: A0A5D3DZE4 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001420 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2   NQPEAQTAALEDALKVVVTEGAKSLIVRDLEGEGEGKEGIEED 45
           N  E +TAALE+ALKVVVTE A++LIV DLE +G+GK+G+EE+
Sbjct: 234 NSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEE 276

[Close]

BLAST of Spg026199 vs. ExPASy TrEMBL
Match: A0A1S3CHL8 (rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501013 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2   NQPEAQTAALEDALKVVVTEGAKSLIVRDLEGEGEGKEGIEED 45
           N  E +TAALE+ALKVVVTE A++LIV DLE +G+GK+G+EE+
Sbjct: 234 NSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEE 276

The following BLAST results are available for this feature:

BLAST of Spg026199 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933155.1	5.5e-06	75.00	rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022965491.1	9.4e-06	75.00	rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita maxima]	[more]
KAG6588314.1	1.6e-05	75.00	Rubisco accumulation factor 1.2, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_038880540.1	2.1e-05	70.45	rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida]	[more]
XP_008462710.1	8.8e-04	65.12	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo]	[more]

BLAST of Spg026199 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg026199 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F451	2.7e-06	75.00	rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1HLU0	4.5e-06	75.00	rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A5D3DZE4	4.3e-04	65.12	Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CHL8	4.3e-04	65.12	rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of Spg026199 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg026199.1	Spg026199.1	mRNA