Spg025921 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg025921
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosome biogenesis protein BOP1 homolog
Location	scaffold7: 174660 .. 176754 (-)
RNA-Seq Expression	Spg025921
Synteny	Spg025921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCTTCTTTTTTTGTTGTGCATCCATTGATTTATATTATATTTGTTCTGGACAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATGTATTTGAACGTTGCTTGGATCTGTACTTGTGTGCTCGTGTTCAGAGAAAACGTGTAAGCAAAACAAGATCGAGAAGATTTGCTATTTTCTTTTAAAAAAATTGAACCCTATTGGTTCCTGGGTCTGACACCAGATTGGGCTCTTTTGATGTTATTCTACTACTCAATAATTATACAAATACTTGATAATTTTTTTTCCATAACTTTCATGTTTCAGATTAATATTGATCCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCACACCTTTTCCTACTACACGCTATCTTGAATATAGAGGTCATAAGGATGCTGTCGTGTCCATTTCAATTTTGAACTGAAGCAAACGGCCAATGGATTGCTTCAGGTAAGAATAACAAATGAAGAGGTTTGATTATTTTCATTCATGGGACCTAAAATTATTATTTGGATTTGGGTCATTTTTTTTGCTATTGTGTGTCAAGGTTCATTGGATGGAACCGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGAGAGGTTGGCGAAGCTGTAAAGTATGTAGCTTGGAATCCTTTGCCCGAGCTTCCAATATTGGCTGCTGCTGTGTAAGACTAATGATACCATCATTTTGAAGATGTTTAAACTATGGTATCACACCCTTTTTTTTTTTGTTAATTTACTGGTAAACATTCTGTAGGGGTGCTGATGTACTGCTTTTAAACACTGGTTTCGGGAATGGAGAGGTTCGAGCAAAAATTAAGGAATTTGTCCATGTTGAGACACTTCCTGCAACAGATAATTCTGGTAGTACGCAATAGTGATTTGACTCAGTGCTATAGTCAGTTTGAGTGTGTCCTAATTTGTGATGATTCTATGCATAGATTCTCCAATTGCAATAGTCAGTTTGAGGCTGTCCTAATTTGTGATGATTCTATTCATGGATAAGACACCAATTGCAATAGTCAGTTTGAGTGTTGACCTAATTTGTGATGATTCTATGCATAGATAATACACCAATTGCAACCTGGCTTCAAGACGATAAGATTGAGAGAATTAGATTGAGGCATTTTAAGGTGCTTTCTATTCACCTTCTCTCTCCAATAATACGATTCTTGCATTTTTCCTTGTAGCTAGAATCAAATGGCTTTTTTTAAATAAGGAATGTAACTGAAGTTTCTTGTGTTTCAATGTGGTTTGCAGACTGTATCTTCAGTTGAATGGCATCGTAAAGGAGATTATCTTTCAACAGTTATGGCAGCTGATATCCTATTTAATTTTGTTTTGAAGCTTTGTCATCTTTATTTCACTTGGATATAAATGACTTTGAGTTACATGTGTCGACACATCTATGGTAAAGGCTTGGTATTCATAAAACTTCTCTATGTATCTGCAAATCGTACTCTGTTATTGTCTAACCCTGTAGTTTTGGTGAAAAACATCTGTTTGATGACAGAAGTCAACTTGACGCCATTTTTCATGCCTTTTCTTTCCCCAAGATGTTTTTTCAAGTCCATGATTCTAATTTTTTAGAAGATAAATTTCCTAAGTTTAGGTTGAGTGTTGCTTATGATGACTCTTGCTCCTTGGCATAAATAATACGTTGCAAGATTAGGTCTTGTGGTAATGTACCCGCCTAAAGGAAGGAAGTCAATTGGGGCTACGGGGAGTTATAACCATCTCGATTCCTTTGTTGGTTTAGGGTCTATCTGGTCTTCTGGACATGTTTTGCATAGTTCTCGTTGAGGATGTTTTTCTCCTTTTTTTTTGTTGCTTCATTTTTACTGGCTTCATTTTAGTTTCATTCTTGTTAATGGAAGTGTTGTTTCAAATCAAATAAATATTGAGCCATTGACAAGTGTCAAGTAGGACCTTTGTGTCTTGTATTTTCCTGTTTGTAGGGTGAAGTGGTAACAATTATTTATTTGTTTATTTAAGAGAGCAACAGTTTTTCTTGACTTGTATTACGTGAATCAAGAGCAGTTCTCTTATT

mRNA sequence

CCATCTTCTTTTTTTGTTGTGCATCCATTGATTTATATTATATTTGTTCTGGACAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATGTATTTGAACGTTGCTTGGATCTGTACTTGTGTGCTCGTGTTCAGAGAAAACGTATTAATATTGATCCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCACACCTTTTCCTACTACACGCTATCTTGAATATAGAGAGGTTGGCGAAGCTGTAAAGTATGTAGCTTGGAATCCTTTGCCCGAGCTTCCAATATTGGCTGCTGCTGTGGGTGCTGATGTACTGCTTTTAAACACTGGTTTCGGGAATGGAGAGGTTCGAGCAAAAATTAAGGAATTTGTCCATGTTGAGACACTTCCTGCAACAGATAATTCTGATAATACACCAATTGCAACCTGGCTTCAAGACGATAAGATTGAGAGAATTAGATTGAGGCATTTTAAGACTGTATCTTCAGTTGAATGGCATCGTAAAGGAGATTATCTTTCAACAGTTATGGCAGCTGATATCCTATTTAATTTTGTTTTGAAGCTTTGTCATCTTTATTTCACTTGGATATAA

Coding sequence (CDS)

CCATCTTCTTTTTTTGTTGTGCATCCATTGATTTATATTATATTTGTTCTGGACAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATGTATTTGAACGTTGCTTGGATCTGTACTTGTGTGCTCGTGTTCAGAGAAAACGTATTAATATTGATCCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCACACCTTTTCCTACTACACGCTATCTTGAATATAGAGAGGTTGGCGAAGCTGTAAAGTATGTAGCTTGGAATCCTTTGCCCGAGCTTCCAATATTGGCTGCTGCTGTGGGTGCTGATGTACTGCTTTTAAACACTGGTTTCGGGAATGGAGAGGTTCGAGCAAAAATTAAGGAATTTGTCCATGTTGAGACACTTCCTGCAACAGATAATTCTGATAATACACCAATTGCAACCTGGCTTCAAGACGATAAGATTGAGAGAATTAGATTGAGGCATTTTAAGACTGTATCTTCAGTTGAATGGCATCGTAAAGGAGATTATCTTTCAACAGTTATGGCAGCTGATATCCTATTTAATTTTGTTTTGAAGCTTTGTCATCTTTATTTCACTTGGATATAA

Protein sequence

PSSFFVVHPLIYIIFVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPFPTTRYLEYREVGEAVKYVAWNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQDDKIERIRLRHFKTVSSVEWHRKGDYLSTVMAADILFNFVLKLCHLYFTWI

Homology

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BLAST of Spg025921 vs. NCBI nr
Match: KAG7032384.1 (Ribosome biogenesis protein BOP1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74
Identity = 150/222 (67.57%), Postives = 164/222 (73.87%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTSMRSVPAY +ALKD FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 337 FIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 396

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PTT YLE+R                                         E+ EAVKYVA
Sbjct: 397 PTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELEEAVKYVA 456

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDN-TPIATWLQ 194
           WNPLPELPILAAAVG DVLLLNTGFG+GEV+AK+KE +H++ LPATDNS N TPIATWLQ
Sbjct: 457 WNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKELLHIDALPATDNSGNKTPIATWLQ 516

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BLAST of Spg025921 vs. NCBI nr
Match: XP_022997418.1 (ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-72
Identity = 143/212 (67.45%), Postives = 157/212 (74.06%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTSMRSVPAY +ALKD FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 338 FIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 397

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PTT YLE+R                                         E+GEAVKYVA
Sbjct: 398 PTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVA 457

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPLPELPILAAAVG DVLLLNTGFG+GEV+AK+KE +H++ LPATDNSD TPIATWLQD
Sbjct: 458 WNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKELLHIDALPATDNSDKTPIATWLQD 517

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BLAST of Spg025921 vs. NCBI nr
Match: XP_022997427.1 (ribosome biogenesis protein BOP1 homolog isoform X2 [Cucurbita maxima])

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-72
Identity = 143/212 (67.45%), Postives = 157/212 (74.06%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTSMRSVPAY +ALKD FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 337 FIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 396

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PTT YLE+R                                         E+GEAVKYVA
Sbjct: 397 PTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVA 456

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPLPELPILAAAVG DVLLLNTGFG+GEV+AK+KE +H++ LPATDNSD TPIATWLQD
Sbjct: 457 WNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKELLHIDALPATDNSDKTPIATWLQD 516

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BLAST of Spg025921 vs. NCBI nr
Match: XP_023546869.1 (ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.7 bits (722), Expect = 2.5e-72
Identity = 143/212 (67.45%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTSMRSVPAY  ALKD FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 338 FIPRRFTSMRSVPAYDSALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 397

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PTT YLE+R                                         E+GEAVKYVA
Sbjct: 398 PTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVA 457

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPLPELPILAAAVG DVLLLNTGFG+GEV+AK+KE +H++ LPATDNSD TPIATWLQD
Sbjct: 458 WNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKELLHIDALPATDNSDKTPIATWLQD 517

[Close]

BLAST of Spg025921 vs. NCBI nr
Match: XP_023546877.1 (ribosome biogenesis protein BOP1 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.7 bits (722), Expect = 2.5e-72
Identity = 143/212 (67.45%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTSMRSVPAY  ALKD FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 337 FIPRRFTSMRSVPAYDSALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 396

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PTT YLE+R                                         E+GEAVKYVA
Sbjct: 397 PTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVA 456

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPLPELPILAAAVG DVLLLNTGFG+GEV+AK+KE +H++ LPATDNSD TPIATWLQD
Sbjct: 457 WNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKELLHIDALPATDNSDKTPIATWLQD 516

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BLAST of Spg025921 vs. ExPASy Swiss-Prot
Match: F4IH25 (Ribosome biogenesis protein BOP1 homolog OS=Arabidopsis thaliana OX=3702 GN=BOP1 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.6e-48
Identity = 101/212 (47.64%), Postives = 127/212 (59.91%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTS+RS+PAY +ALK+ FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 352 FIPTRFTSLRSIPAYENALKESFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 411

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           P + YLEY+                                         +  EA+  VA
Sbjct: 412 PNSCYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRCLKVWQFDEAIMCVA 471

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPL  LP+LA A+G D+  LNT  G  E +   KE +H   +P  D S    I TWL D
Sbjct: 472 WNPLSRLPVLAVAMGRDLFFLNTELGTDEEQEITKERLHSGNIPEPDAS-VAAIVTWLPD 531

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BLAST of Spg025921 vs. ExPASy Swiss-Prot
Match: Q0D6V7 (Ribosome biogenesis protein BOP1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=BOP1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.8e-40
Identity = 89/211 (42.18%), Postives = 116/211 (54.98%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  +F  +RSVPAY  AL++ F+RCLDLYLC R ++KRINIDPESLKPKLPS+ DL P+
Sbjct: 274 FIPRKFDCLRSVPAYEKALREGFDRCLDLYLCPRTRKKRINIDPESLKPKLPSKKDLRPY 333

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           P T YLE++                                          VG  V  +A
Sbjct: 334 PRTCYLEFKGHNGPVKSLSVEATGQWIASGSSDGTIRVWEVETGRCIKVWNVGGVVHRIA 393

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETL-PATDNSDNTPIATWLQ 184
           WNP P+  ILAA V  D+LLLN   G+ + + K K  + +E L    DN D  P   W++
Sbjct: 394 WNPSPDRHILAAVVDHDLLLLNAEVGDEDAQMKTKGLLQIEELAQEEDNGDKKPAVKWVK 453

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BLAST of Spg025921 vs. ExPASy Swiss-Prot
Match: Q14137 (Ribosome biogenesis protein BOP1 OS=Homo sapiens OX=9606 GN=BOP1 PE=1 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-28
Identity = 79/218 (36.24%), Postives = 107/218 (49.08%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  +F S+R+VPAY   +++ FERCLDLYLC R ++ R+N+DPE L PKLP   DL PF
Sbjct: 342 FLPRKFPSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPF 401

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PT + L YR                                          VG  VK VA
Sbjct: 402 PTCQALVYRGHSDLVRCLSVSPGGQWLVSGSDDGSLRLWEVATARCVRTVPVGGVVKSVA 461

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPI--ATWL 185
           WNP P + ++AAAV   VLLLN   G+  V     + +     P     +  P+  A WL
Sbjct: 462 WNPSPAVCLVAAAVEDSVLLLNPALGDRLVAGSTDQLLSAFVPP-----EEPPLQPARWL 521

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BLAST of Spg025921 vs. ExPASy Swiss-Prot
Match: P97452 (Ribosome biogenesis protein BOP1 OS=Mus musculus OX=10090 GN=Bop1 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 73/217 (33.64%), Postives = 105/217 (48.39%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  +F S+R+VPAY   +++ FERCLDLYLC R ++ R+N+DPE L PKLP   DL PF
Sbjct: 328 FLPQKFPSLRTVPAYSRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPF 387

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           P  + L YR                                          VG  V+ +A
Sbjct: 388 PVCQALVYRGHSDLVRCLSVSPGGQWLASGSDDGTLKLWEVATARCMKTVHVGGVVRSIA 447

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNP P + ++AAA+   VLLLN   G+  +     + +   T P          A WL+ 
Sbjct: 448 WNPNPTICLVAAAMDDAVLLLNPALGDRLLVGSTDQLLEAFTPP---EEPALQPARWLEV 507

[Close]

BLAST of Spg025921 vs. ExPASy Swiss-Prot
Match: B4LKS9 (Ribosome biogenesis protein BOP1 homolog OS=Drosophila virilis OX=7244 GN=GJ22246 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 77/218 (35.32%), Postives = 104/218 (47.71%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  +F S+R VPAY   L++ F RCLDLYLC R +R ++NID E L PKLPS  DL PF
Sbjct: 372 FMPQKFKSLREVPAYSRYLRERFLRCLDLYLCPRAKRVKLNIDAEYLIPKLPSPRDLQPF 431

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PT   L YR                                         E  + V+ VA
Sbjct: 432 PTVESLVYRGHTDLVRSVSVEPKGEYMASGSDDKTVKIWEIATGRCIRTIETNDVVRCVA 491

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQ- 184
           W P  +L I+A A G+ +LL+N   G+  +  K  + +     P+ D  DN  I T +Q 
Sbjct: 492 WCPNAKLSIIAVATGSRLLLINPKVGDKLLIKKTDDLLAAS--PSLDVIDNERIKTAVQW 551

[Close]

BLAST of Spg025921 vs. ExPASy TrEMBL
Match: A0A6J1K504 (Ribosome biogenesis protein BOP1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111492339 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 9.1e-73
Identity = 143/212 (67.45%), Postives = 157/212 (74.06%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTSMRSVPAY +ALKD FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 337 FIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 396

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PTT YLE+R                                         E+GEAVKYVA
Sbjct: 397 PTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVA 456

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPLPELPILAAAVG DVLLLNTGFG+GEV+AK+KE +H++ LPATDNSD TPIATWLQD
Sbjct: 457 WNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKELLHIDALPATDNSDKTPIATWLQD 516

[Close]

BLAST of Spg025921 vs. ExPASy TrEMBL
Match: A0A6J1KDU0 (Ribosome biogenesis protein BOP1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111492339 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 9.1e-73
Identity = 143/212 (67.45%), Postives = 157/212 (74.06%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTSMRSVPAY +ALKD FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 338 FIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 397

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PTT YLE+R                                         E+GEAVKYVA
Sbjct: 398 PTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVA 457

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPLPELPILAAAVG DVLLLNTGFG+GEV+AK+KE +H++ LPATDNSD TPIATWLQD
Sbjct: 458 WNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKELLHIDALPATDNSDKTPIATWLQD 517

[Close]

BLAST of Spg025921 vs. ExPASy TrEMBL
Match: A0A6J1D5R0 (Ribosome biogenesis protein BOP1 homolog OS=Momordica charantia OX=3673 GN=LOC111017555 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.9e-72
Identity = 144/212 (67.92%), Postives = 153/212 (72.17%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTSMRSVPAY +ALKD FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 317 FIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLKPY 376

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PTT YLEYR                                         EVGEAVKYVA
Sbjct: 377 PTTCYLEYRGHKDVVISISTEANGQWIASGSLDGTVRIWEVETGRCLKVWEVGEAVKYVA 436

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPLPELPILA  VG DVLLLNTGFG+GEV+ KIKE +HVE LP TDNSD TP+ATWLQD
Sbjct: 437 WNPLPELPILAVVVGIDVLLLNTGFGDGEVQTKIKELLHVEMLPETDNSDKTPVATWLQD 496

[Close]

BLAST of Spg025921 vs. ExPASy TrEMBL
Match: A0A6J1GYI9 (Ribosome biogenesis protein BOP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458654 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.7e-72
Identity = 142/212 (66.98%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTSMRSVPAY +ALKD FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 337 FIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 396

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PTT YLE+R                                         E+ EAVKYVA
Sbjct: 397 PTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELEEAVKYVA 456

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPLPELPILAAAVG DVLLLNTGFG+GEV+AK+KE +H++ LPATDNSD TPIATWLQD
Sbjct: 457 WNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKELLHIDALPATDNSDKTPIATWLQD 516

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BLAST of Spg025921 vs. ExPASy TrEMBL
Match: A0A6J1GZU4 (Ribosome biogenesis protein BOP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458654 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.7e-72
Identity = 142/212 (66.98%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTSMRSVPAY +ALKD FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 338 FIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 397

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           PTT YLE+R                                         E+ EAVKYVA
Sbjct: 398 PTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELEEAVKYVA 457

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPLPELPILAAAVG DVLLLNTGFG+GEV+AK+KE +H++ LPATDNSD TPIATWLQD
Sbjct: 458 WNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKELLHIDALPATDNSDKTPIATWLQD 517

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BLAST of Spg025921 vs. TAIR 10
Match: AT2G40360.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-49
Identity = 101/212 (47.64%), Postives = 127/212 (59.91%), Query Frame = 0


Query: 15  FVLDRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPF 74
           F+  RFTS+RS+PAY +ALK+ FERCLDLYLC RV++KRINIDPESLKPKLPSR DL P+
Sbjct: 352 FIPTRFTSLRSIPAYENALKESFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPY 411

Query: 75  PTTRYLEYR-----------------------------------------EVGEAVKYVA 134
           P + YLEY+                                         +  EA+  VA
Sbjct: 412 PNSCYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRCLKVWQFDEAIMCVA 471

Query: 135 WNPLPELPILAAAVGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSDNTPIATWLQD 186
           WNPL  LP+LA A+G D+  LNT  G  E +   KE +H   +P  D S    I TWL D
Sbjct: 472 WNPLSRLPVLAVAMGRDLFFLNTELGTDEEQEITKERLHSGNIPEPDAS-VAAIVTWLPD 531

The following BLAST results are available for this feature:

BLAST of Spg025921 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032384.1	2.0e-74	67.57	Ribosome biogenesis protein BOP1-like protein [Cucurbita argyrosperma subsp. arg...	[more]
XP_022997418.1	1.9e-72	67.45	ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita maxima]	[more]
XP_022997427.1	1.9e-72	67.45	ribosome biogenesis protein BOP1 homolog isoform X2 [Cucurbita maxima]	[more]
XP_023546869.1	2.5e-72	67.45	ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023546877.1	2.5e-72	67.45	ribosome biogenesis protein BOP1 homolog isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg025921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IH25	2.6e-48	47.64	Ribosome biogenesis protein BOP1 homolog OS=Arabidopsis thaliana OX=3702 GN=BOP1...	[more]
Q0D6V7	5.8e-40	42.18	Ribosome biogenesis protein BOP1 homolog OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q14137	5.0e-28	36.24	Ribosome biogenesis protein BOP1 OS=Homo sapiens OX=9606 GN=BOP1 PE=1 SV=2	[more]
P97452	1.2e-26	33.64	Ribosome biogenesis protein BOP1 OS=Mus musculus OX=10090 GN=Bop1 PE=1 SV=1	[more]
B4LKS9	1.6e-26	35.32	Ribosome biogenesis protein BOP1 homolog OS=Drosophila virilis OX=7244 GN=GJ2224...	[more]

BLAST of Spg025921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K504	9.1e-73	67.45	Ribosome biogenesis protein BOP1 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1KDU0	9.1e-73	67.45	Ribosome biogenesis protein BOP1 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1D5R0	5.9e-72	67.92	Ribosome biogenesis protein BOP1 homolog OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1GYI9	7.7e-72	66.98	Ribosome biogenesis protein BOP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1GZU4	7.7e-72	66.98	Ribosome biogenesis protein BOP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Spg025921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40360.1	1.8e-49	47.64	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 82..193 e-value: 7.5E-18 score: 66.6
IPR012953	BOP1, N-terminal domain	PFAM	PF08145	BOP1NT	coord: 15..75 e-value: 1.4E-23 score: 84.2
IPR028598	WD repeat BOP1/Erb1	PANTHER	PTHR17605	RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN	coord: 84..185 coord: 15..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg025921.1	Spg025921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006364	rRNA processing
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031981	nuclear lumen
molecular_function	GO:0005515	protein binding