Spg025889 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg025889
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L17
Location	scaffold7: 408263 .. 411462 (+)
RNA-Seq Expression	Spg025889
Synteny	Spg025889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACCCTCCCCTCTTCTAGCGTTTCAATCTCCTTTTTCACCTCTTCTTGTCTGTGCGATGCTCAAAATTCTACAATCTTAGCAAGTTTCTGATTCAGATTTATATTCATGTTCTGTTTTACAGGTTAAGTACTCAAGGGAGCCCGATAACGCCACAAAGTGTAAGTTTATTCTCCAATACATATTCCCTTCTGTATCTCATTGGTTTTAGTTATGCAGTTCTTATGTGTTTCACTCTTTCTGAAGTTTCGGAGTTAGGTTAGAAGTACACAATCTAATACTTGTTTTTTATTTCTGTTCAGCCTGCAAAGCGCGAGGCTCCGACCTCAGAGTCCACTTCAAGGTAACATATTAGCCTTAACTGCTTTCTCCTTTCATTGTTTTTCCCCATTGAAACCCGTCAATTCTATGCAAAATGTATGGGTTTTCAATACATTGCTCATTTTAATGCATACTGCTGTGGAATCTCTTACTCTTAGATTCCTGGCGTATTGTTTTGATAATTTGTTCACTGAGTTAGACAATGTGTAATTAATTTGTAGTTGTTAAATTTTGGATCAAGAGCAATGTCATATATGAAATTGTTATTGTCGCACTAATCTCGTATGTTGTCGTGTATGTTATGATTATTTGAGACTGCCTGTAACAAACCTGATGAAAAAAGCAGGGCTCTGTTGCTTCTTTTGTGAATAGTGCTCTCGTAAACTTCAGGAAAACTGAATGAATCATTATTGGGTGAACCTGTGTATAGATAATTGCTTAAGGTTCAGTAAATGATGCTACATAATGTTTGTAGCTTCTTGTAACAATATATATTTGGTTGATAATGTTTGGATTGCGCATATAAGATTTATAATTTTGCACTATGTAACTTTGTATAGATAGTGTGGTGATCATCTGAGATTGCCTGTAACAAACCTGATGAAAAAAGCAGGGCTCTGTTGCCTCTTTGTGAATAGTGCTCTCGTAAACTTCAGGAAAACTAAAGGAATCATTATTGGGTGAACCTCTGTATAATTAATTGCTGAAGGTTCAGTAAATGATGCTACATAATCTTTATAGCTTCTTGTCATAATGACTATTTGGTTGATAGTTTTTGGATTGTAAGATTTATAATTTTTCTCTTAATGTAATTTTTTAATATTGTGAATGTGGTGATTATCTTAGACTGCCTGTACTCAACCTGATGAAAAAAGCAGGGCTCTGTTGCCCGTTTTGTGAATAGTGCTCTCGTAAACTTCAGGAAAACTGAATGTATTGTTATTGGGTGAACCTCTGTAAATATAATTGCCGAAGGTTCAGTAAATGGTGCAACATAATATCTATAGCATTTTTCATTATATAAAGAGAGGTTGATGGTCCTTGGAGCCTCAAACTTTTACTGCCGATTAGCCTCTTTTTTGTTTGACTCAAAGAGTACCGGGTAAATGTTAAATGAATTCTATTTTATAACTATTTATTAGTAAATACAACTCAATTCTACACGATATGTAGAAACTGTTGAATTTTTACTGCATTTAAGAATGATTTTCTGAAACTGGCCTTGTTTGGAACCTGATGAAAAAAGCAGGGCTTTGTTGCCTCTTGTGAATAGGGCTCTCGTAAACTTCAGGGAAACTAAGTGCATTGTTATTGGGTGAACCTCTGTAGAGATGGTTGCTGAAGGTTCAGTAAATGATGCTACATTTGTAAAATAGCACATTGATCTTAAAGGTGATATATAAAATAAGTGAATCAAGGGAGACTTTTGTATATGGAGAATTGCATTTTTATTCCTGATGATGCACAGATGTTAATGGTATTGTTTTATGTTTTCCAACTCTTTGGTTGGGAATAATATTGCCTCCACTATATACCAAATACACCATTATGCTTCACTTGCAATTATAAGAGTTGTCTTGATTATATAACCTGATGAAAAAAGCAGGGCTCTGTTGCCTTTTGTGAATGGTGGCTCTCGTTAAATTCAGGGAAATTGAATGCATTGTTATTGGGTGAACCTCTGTAAAACTAGTTGCTAAAGGTTCAGTAAATGATGTTACAGGAAAATAATATAGATTATAAAAAATTCAGTCTCTGGCATTTGAAATTATATTGCAATTTTGTTGGCAATTTCGAAGGTTTCACATTTAGTAATTTCTGTTTGCCTTGCGAATTAATTGATTTTTTTCCACAGCTTTCATGAACTTAGATAGATCTTTTTTTCCTTAACATTTTTAACTTTATGTATCCATCATCAATTTTTTTGTCTTTAGAATACGAGAGAGACTGCTCATGCCCTCAGAAAGTTGCCCTTGGCCAAGGCAAAAAGGTACTTGGAGGATGTTCTCGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGTGTTGGACGAACTGCTCAGGCCAAAAATAGGCACTCAAATGGACAAGGTCGCTGGCCAGTTAAATCTGCAAAATTTATTCTAGATCTTCTTAAGAATGCTGAAAGTAATGCCGAAGTATGTATTGACATCCCTCCAAGTTACTTATGGCCGTTCTGTTTTTTTGTCTCTTTGATTCTGACTGGTAAATCTTCATTCAGTTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATTCAGGTGAATCAAGCTCAGAAGCAAAGGCGTCGTACATACCGTGCTCACGGAAGAATTAACCGTGAGTTTCTCAAAATCTCAAATACAACTCTTTACTGTTTCTGGTTAGATCATAACTTAAATTATGAATTTGATGTTTTGTTTTGCAGCCTATATGTCATCTCCATGCCACATTGAGCTTATTTTGTCAGAGAAGGAAGAACCCGTCAAGAAAGAGGTAAATTCAAGATTGTAAAATTTGATGGGTATTATATTGTATATATGGTTTAGGGCTTCTTCTTGAATCCTTATTTTTCTATTGACAGCCTGAGACCCAGTTGGCAACGAGTAAAACCAAGAAAGGTCAAGCTCTCCGCAGTGGTGCTTCATCTTGATCAATATTATTGCCTTTTTAAGTTTTTTTTTTTTAAACAGAGTTTGGTTGCTTTCGTTCGTCATTATAGAATGATCTGTCCCGTATCAAATTCCCCTAACTTTGTAGTTTATGAAATCGTCAATCATGTTCGTTTTGCTAGGAATTCTTTTCTAAATTTTGGATTTTCATTCCTTCTAAACGAAGAGTTCTACCAATCATGACTTTTTTTTTT

mRNA sequence

ATGGTACCCTCCCCTCTTCTAGCGTTTCAATCTCCTTTTTCACCTCTTCTTGTTAAGTACTCAAGGGAGCCCGATAACGCCACAAAGTCCTGCAAAGCGCGAGGCTCCGACCTCAGAGTCCACTTCAAGAATACGAGAGAGACTGCTCATGCCCTCAGAAAGTTGCCCTTGGCCAAGGCAAAAAGGTACTTGGAGGATGTTCTCGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGTGTTGGACGAACTGCTCAGGCCAAAAATAGGCACTCAAATGGACAAGGTCGCTGGCCAGTTAAATCTGCAAAATTTATTCTAGATCTTCTTAAGAATGCTGAAAGTAATGCCGAATTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATTCAGGTGAATCAAGCTCAGAAGCAAAGGCGTCGTACATACCGTGCTCACGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATTGAGCTTATTTTGTCAGAGAAGGAAGAACCCGTCAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAAACCAAGAAAGGTCAAGCTCTCCGCAGTGGTGCTTCATCTTGA

Coding sequence (CDS)

ATGGTACCCTCCCCTCTTCTAGCGTTTCAATCTCCTTTTTCACCTCTTCTTGTTAAGTACTCAAGGGAGCCCGATAACGCCACAAAGTCCTGCAAAGCGCGAGGCTCCGACCTCAGAGTCCACTTCAAGAATACGAGAGAGACTGCTCATGCCCTCAGAAAGTTGCCCTTGGCCAAGGCAAAAAGGTACTTGGAGGATGTTCTCGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGTGTTGGACGAACTGCTCAGGCCAAAAATAGGCACTCAAATGGACAAGGTCGCTGGCCAGTTAAATCTGCAAAATTTATTCTAGATCTTCTTAAGAATGCTGAAAGTAATGCCGAATTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATTCAGGTGAATCAAGCTCAGAAGCAAAGGCGTCGTACATACCGTGCTCACGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATTGAGCTTATTTTGTCAGAGAAGGAAGAACCCGTCAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAAACCAAGAAAGGTCAAGCTCTCCGCAGTGGTGCTTCATCTTGA

Protein sequence

MVPSPLLAFQSPFSPLLVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSGASS

Homology

[Close]

BLAST of Spg025889 vs. NCBI nr
Match: XP_022945920.1 (60S ribosomal protein L17-2 [Cucurbita moschata] >XP_022966986.1 60S ribosomal protein L17-2-like [Cucurbita maxima] >XP_023541703.1 60S ribosomal protein L17-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.5 bits (911), Expect = 2.9e-94
Identity = 179/183 (97.81%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE+KGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSG 196
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK+KKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180

Query: 197 ASS 200
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg025889 vs. NCBI nr
Match: XP_008446047.1 (PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo] >XP_011655562.1 60S ribosomal protein L17-2 [Cucumis sativus] >KAA0034200.1 60S ribosomal protein L17-2 [Cucumis melo var. makuwa] >KGN51678.1 hypothetical protein Csa_007731 [Cucumis sativus] >TYK15720.1 60S ribosomal protein L17-2 [Cucumis melo var. makuwa])

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE+KGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSG 196
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK+KK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 197 ASS 200
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg025889 vs. NCBI nr
Match: XP_022151946.1 (60S ribosomal protein L17-2 [Momordica charantia])

HSP 1 Score: 350.9 bits (899), Expect = 7.2e-93
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSREPDN+TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNSTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE+KGLDVDSLI+SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIISHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSG 196
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA SK K+GQ LRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKAKRGQVLRSG 180

Query: 197 ASS 200
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg025889 vs. NCBI nr
Match: XP_038891549.1 (60S ribosomal protein L17-2 [Benincasa hispida])

HSP 1 Score: 350.5 bits (898), Expect = 9.4e-93
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE+KGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSG 196
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPE QLATSK KK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPEIQLATSKAKKSQALRSG 180

Query: 197 ASS 200
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg025889 vs. NCBI nr
Match: ADR71274.1 (60S ribosomal protein L17A [Hevea brasiliensis])

HSP 1 Score: 348.2 bits (892), Expect = 4.7e-92
Identity = 172/183 (93.99%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSREP+NATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPENATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE+KGLDVD+L++SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLVISHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSG 196
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA SK+KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQAIRSG 180

Query: 197 ASS 200
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg025889 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.9e-84
Identity = 153/174 (87.93%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYS+EPDN TKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAE+KGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKG 191
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +K+KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Spg025889 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 312.0 bits (798), Expect = 4.9e-84
Identity = 154/176 (87.50%), Postives = 166/176 (94.32%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAE+KGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQA 193
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +K+KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Spg025889 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.6e-79
Identity = 146/170 (85.88%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYS+EP N TKS KA G DLRVHFKNTRETA ALRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA++KGLDVD+L VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK 187
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of Spg025889 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.7e-76
Identity = 140/167 (83.83%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYS +P N TKS KA G DLRVHFKNTRETA ALRK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAE+KGLDVD+L +SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 184
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of Spg025889 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 8.3e-76
Identity = 139/170 (81.76%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSR+P N TKS KA G DLRVHFKNTRETA ALR++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAE+KGLDVD+L +SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK 187
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170

[Close]

BLAST of Spg025889 vs. ExPASy TrEMBL
Match: A0A6J1HQT9 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 179/183 (97.81%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE+KGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSG 196
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK+KKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180

Query: 197 ASS 200
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg025889 vs. ExPASy TrEMBL
Match: A0A6J1G2C7 (60S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 179/183 (97.81%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE+KGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSG 196
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK+KKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180

Query: 197 ASS 200
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg025889 vs. ExPASy TrEMBL
Match: A0A5A7STA3 (60S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002190 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.0e-94
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE+KGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSG 196
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK+KK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 197 ASS 200
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg025889 vs. ExPASy TrEMBL
Match: A0A0A0KPZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.0e-94
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE+KGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSG 196
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK+KK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 197 ASS 200
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg025889 vs. ExPASy TrEMBL
Match: A0A1S3BDN4 (60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.0e-94
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE+KGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQALRSG 196
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK+KK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 197 ASS 200
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg025889 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 312.0 bits (798), Expect = 3.5e-85
Identity = 154/176 (87.50%), Postives = 166/176 (94.32%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAE+KGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQA 193
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +K+KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Spg025889 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 312.0 bits (798), Expect = 3.5e-85
Identity = 153/174 (87.93%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYS+EPDN TKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAE+KGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKG 191
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +K+KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Spg025889 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 209.9 bits (533), Expect = 1.9e-54
Identity = 116/176 (65.91%), Postives = 124/176 (70.45%), Query Frame = 0


Query: 17  LVKYSREPDNATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 76
           +VKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 77  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAELKGLDVDSLIVSHIQV 136
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNA                 
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNA----------------- 120

Query: 137 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKTKKGQA 193
                                      ELILSEKEEPVKKEPETQLA +K+KK  A
Sbjct: 121 ---------------------------ELILSEKEEPVKKEPETQLA-AKSKKSAA 131

The following BLAST results are available for this feature:

BLAST of Spg025889 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945920.1	2.9e-94	97.81	60S ribosomal protein L17-2 [Cucurbita moschata] >XP_022966986.1 60S ribosomal p...	[more]
XP_008446047.1	1.5e-93	97.27	PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo] >XP_011655562.1 60S riboso...	[more]
XP_022151946.1	7.2e-93	95.63	60S ribosomal protein L17-2 [Momordica charantia]	[more]
XP_038891549.1	9.4e-93	96.72	60S ribosomal protein L17-2 [Benincasa hispida]	[more]
ADR71274.1	4.7e-92	93.99	60S ribosomal protein L17A [Hevea brasiliensis]	[more]

BLAST of Spg025889 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VI3	4.9e-84	87.93	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
P51413	4.9e-84	87.50	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
O48557	3.6e-79	85.88	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
P35266	3.7e-76	83.83	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
P35267	8.3e-76	81.76	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of Spg025889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQT9	1.4e-94	97.81	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=...	[more]
A0A6J1G2C7	1.4e-94	97.81	60S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 S...	[more]
A0A5A7STA3	7.0e-94	97.27	60S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0KPZ4	7.0e-94	97.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1	[more]
A0A1S3BDN4	7.0e-94	97.27	60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1	[more]

BLAST of Spg025889 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67430.1	3.5e-85	87.50	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	3.5e-85	87.93	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.2	1.9e-54	65.91	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 20..170 e-value: 2.8E-60 score: 200.6
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 17..199
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	HAMAP	MF_01331_A	Ribosomal_L22_A	coord: 16..170 score: 24.419172
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 33..168 e-value: 4.8E-39 score: 132.7
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 31..167 e-value: 3.77481E-37 score: 122.985
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 17..198 e-value: 2.9E-76 score: 257.2
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 18..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..199
None	No IPR available	PANTHER	PTHR11593:SF35	60S RIBOSOMAL PROTEIN L17-2-LIKE	coord: 17..199
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 143..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg025889.1	Spg025889.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome