Spg025871 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg025871
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING-type domain-containing protein
Location	scaffold7: 1200881 .. 1201297 (-)
RNA-Seq Expression	Spg025871
Synteny	Spg025871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCTCAAATTTTCCCCATTCGGCTGAAGGAGTGTTGCTGTTGCCAGTGCTAGTGATGAACACAGTAATGTCGATGGCTTTCTTGAAGAATTTGGTGAGATCTGTGATACAAATGATGAGTGCTAGTGCGAGCCCTTCGAGTTCTGAGGAAGAATATGATTCAGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCCTTGCGCCAAAGCTTCAATGGTGAAACAGAGGATGGCTCTGCTTCGAGGTGTGTTATGGCAGAGTGCTGCGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTATCTTGCAAGCACTTTTTCCATAAAGGTTGTCTTTCTAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTCTGTCGCTCCATTGAATAG

mRNA sequence

ATGGGTCTCTCAAATTTTCCCCATTCGGCTGAAGGAGTGTTGCTGTTGCCAGTGCTAGTGATGAACACAGTAATGTCGATGGCTTTCTTGAAGAATTTGGTGAGATCTGTGATACAAATGATGAGTGCTAGTGCGAGCCCTTCGAGTTCTGAGGAAGAATATGATTCAGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCCTTGCGCCAAAGCTTCAATGGTGAAACAGAGGATGGCTCTGCTTCGAGGTGTGTTATGGCAGAGTGCTGCGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTATCTTGCAAGCACTTTTTCCATAAAGGTTGTCTTTCTAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTCTGTCGCTCCATTGAATAG

Coding sequence (CDS)

ATGGGTCTCTCAAATTTTCCCCATTCGGCTGAAGGAGTGTTGCTGTTGCCAGTGCTAGTGATGAACACAGTAATGTCGATGGCTTTCTTGAAGAATTTGGTGAGATCTGTGATACAAATGATGAGTGCTAGTGCGAGCCCTTCGAGTTCTGAGGAAGAATATGATTCAGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCCTTGCGCCAAAGCTTCAATGGTGAAACAGAGGATGGCTCTGCTTCGAGGTGTGTTATGGCAGAGTGCTGCGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTATCTTGCAAGCACTTTTTCCATAAAGGTTGTCTTTCTAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTCTGTCGCTCCATTGAATAG

Protein sequence

MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEEYDSENGRERRISITQFKSLRQSFNGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGCLSKWFDNKHITCPLCRSIE

Homology

[Close]

BLAST of Spg025871 vs. NCBI nr
Match: XP_022151826.1 (probable E3 ubiquitin-protein ligase XERICO [Momordica charantia])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 128/140 (91.43%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSA--SASPSSSEEEYDSEN 60
           MGLSNFP  AEGVLLLPVL+MNTVMSMAFLK+LVRSVIQMMSA  SASPSSSEEEYDSEN
Sbjct: 1   MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSEN 60

Query: 61  GRERRISITQFKSLRQSFNGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKG 120
            RERRISITQFKSLRQSFNG TEDGSASRC+ AECCVCLCGFEADEEVSELSCKHFFHK 
Sbjct: 61  ARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLCGFEADEEVSELSCKHFFHKA 120

Query: 121 CLSKWFDNKHITCPLCRSIE 139
           CLSKWFDNKHITCPLCRSI+
Sbjct: 121 CLSKWFDNKHITCPLCRSIQ 140

[Close]

BLAST of Spg025871 vs. NCBI nr
Match: XP_022984317.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 252.3 bits (643), Expect = 2.4e-63
Identity = 128/139 (92.09%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEEYDSENGR 60
           MGLSNFP SAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSAS +PSSSEEE+D ENGR
Sbjct: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102

Query: 61  ERRISITQFKSLRQSF-NGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGC 120
           ERRISITQFKSL QSF NG TE GSASRC+MAECCVCLCGFEADEEVSELSCKHFFHK C
Sbjct: 103 ERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEVSELSCKHFFHKAC 162

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 163 LSKWFDNKHITCPLCRSIE 181

[Close]

BLAST of Spg025871 vs. NCBI nr
Match: KAG6601543.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032315.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.1 bits (640), Expect = 5.4e-63
Identity = 129/139 (92.81%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEEYDSENGR 60
           MGLSNFP SAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSAS +PSSSEEE D ENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 60

Query: 61  ERRISITQFKSLRQSF-NGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGC 120
           ERRISITQFKSL QSF NG TE GSASRCVMAECCVCLCGFEADEEVSELSCKHFFHK C
Sbjct: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 121 LSKWFDNKHITCPLCRSIE 139

[Close]

BLAST of Spg025871 vs. NCBI nr
Match: XP_022957080.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 251.1 bits (640), Expect = 5.4e-63
Identity = 129/139 (92.81%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEEYDSENGR 60
           MGLSNFP SAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSAS +PSSSEEE D ENGR
Sbjct: 75  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 134

Query: 61  ERRISITQFKSLRQSF-NGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGC 120
           ERRISITQFKSL QSF NG TE GSASRCVMAECCVCLCGFEADEEVSELSCKHFFHK C
Sbjct: 135 ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 194

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 195 LSKWFDNKHITCPLCRSIE 213

[Close]

BLAST of Spg025871 vs. NCBI nr
Match: XP_023523084.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023547007.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 5.4e-63
Identity = 128/139 (92.09%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEEYDSENGR 60
           MGLSNFP SAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSAS +PSSSEEE+D ENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60

Query: 61  ERRISITQFKSLRQSF-NGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGC 120
           ERRISITQFKSL QSF NG TE GSASRC MAECCVCLCGFEADEEVSELSCKHFFHK C
Sbjct: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 121 LSKWFDNKHITCPLCRSIE 139

[Close]

BLAST of Spg025871 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.5e-18
Identity = 58/148 (39.19%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEE---YDSE 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS + ++  S SPSSS        SE
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  NGRERR---ISITQFKSLRQSFNGETED---GSASRCVMA---ECCVCLCGFEADEEVSE 120
           N          + Q +S  + F   T      S  RC      EC VCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKGCLSKWFDNKHITCPLCRS 137
           L C H FHK CL KW D  +ITCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Spg025871 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-08
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 71  SLRQSFNGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGCLSKWFDNKHIT 130
           +L + F+    D +AS     +C VCL   +  EEV +L C+H FHK CL  W  + +  
Sbjct: 57  NLNRLFSYRYSDNAAS-----DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFN 116

Query: 131 CPLCRS 137
           CPLCRS
Sbjct: 117 CPLCRS 117

[Close]

BLAST of Spg025871 vs. ExPASy Swiss-Prot
Match: Q8LDB8 (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 91  AECCVCLCGFEADEEVSELSCKHFFHKGCLSKWFDNKHITCPLCR 136
           AECC+CL  +E + E+ EL C H FH GC+ KW    + TCPLC+
Sbjct: 323 AECCICLSAYEDETELRELPCGHHFHCGCVDKWL-YINATCPLCK 366

[Close]

BLAST of Spg025871 vs. ExPASy Swiss-Prot
Match: Q93Z92 (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 91  AECCVCLCGFEADEEVSELSCKHFFHKGCLSKWFDNKHIT--CPLCR 136
           AECC+CLC +E   E+ EL C H FH  C+ KW    HI   CPLC+
Sbjct: 336 AECCICLCEYEDGVELRELPCNHHFHCTCIDKWL---HINSRCPLCK 379

[Close]

BLAST of Spg025871 vs. ExPASy Swiss-Prot
Match: Q7ZW78 (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 92  ECCVCLCGFEADEEVSELSCKHFFHKGCLSKWFDNKHITCPLCR 136
           +C VCL  FE  E V E+ CKH FH GC+  W  NK  +CPLCR
Sbjct: 78  KCPVCLLEFEEQESVREMPCKHLFHTGCILPWL-NKTNSCPLCR 120

[Close]

BLAST of Spg025871 vs. ExPASy TrEMBL
Match: A0A6J1DFU2 (probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LOC111019714 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.3e-64
Identity = 128/140 (91.43%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSA--SASPSSSEEEYDSEN 60
           MGLSNFP  AEGVLLLPVL+MNTVMSMAFLK+LVRSVIQMMSA  SASPSSSEEEYDSEN
Sbjct: 1   MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSEN 60

Query: 61  GRERRISITQFKSLRQSFNGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKG 120
            RERRISITQFKSLRQSFNG TEDGSASRC+ AECCVCLCGFEADEEVSELSCKHFFHK 
Sbjct: 61  ARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLCGFEADEEVSELSCKHFFHKA 120

Query: 121 CLSKWFDNKHITCPLCRSIE 139
           CLSKWFDNKHITCPLCRSI+
Sbjct: 121 CLSKWFDNKHITCPLCRSIQ 140

[Close]

BLAST of Spg025871 vs. ExPASy TrEMBL
Match: A0A6J1J1V9 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111482652 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 128/139 (92.09%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEEYDSENGR 60
           MGLSNFP SAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSAS +PSSSEEE+D ENGR
Sbjct: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102

Query: 61  ERRISITQFKSLRQSF-NGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGC 120
           ERRISITQFKSL QSF NG TE GSASRC+MAECCVCLCGFEADEEVSELSCKHFFHK C
Sbjct: 103 ERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEVSELSCKHFFHKAC 162

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 163 LSKWFDNKHITCPLCRSIE 181

[Close]

BLAST of Spg025871 vs. ExPASy TrEMBL
Match: A0A6J1GZI7 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111458569 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.6e-63
Identity = 129/139 (92.81%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEEYDSENGR 60
           MGLSNFP SAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSAS +PSSSEEE D ENGR
Sbjct: 75  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 134

Query: 61  ERRISITQFKSLRQSF-NGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGC 120
           ERRISITQFKSL QSF NG TE GSASRCVMAECCVCLCGFEADEEVSELSCKHFFHK C
Sbjct: 135 ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 194

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 195 LSKWFDNKHITCPLCRSIE 213

[Close]

BLAST of Spg025871 vs. ExPASy TrEMBL
Match: A0A5A7SYA9 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001500 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.4e-61
Identity = 122/138 (88.41%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEEYDSENGR 60
           MGLSNFP SAEGVLLLPVLVM+TVMSMAFLKN VRSVIQMMSAS + SSSEEEYD ENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMHTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENGR 60

Query: 61  ERRISITQFKSLRQSFNGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGCL 120
           ERRISITQFK+L QSFNGETE+   SRCVMAECCVCLC FEADEEVSELSCKHFFHK CL
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL 120

Query: 121 SKWFDNKHITCPLCRSIE 139
           SKWFDNKH TCPLCRSIE
Sbjct: 121 SKWFDNKHFTCPLCRSIE 138

[Close]

BLAST of Spg025871 vs. ExPASy TrEMBL
Match: A0A0A0KTI8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 122/138 (88.41%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEEYDSENGR 60
           MGLSNFP SAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSAS + SSSEEEYD EN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISITQFKSLRQSFNGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGCL 120
           ERRISITQFK+L QSFNGETE+   SRCVMAECCVCLC FEADEEVSELSCKHFFHK CL
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL 120

Query: 121 SKWFDNKHITCPLCRSIE 139
           SKWFDNKH TCPLCRSIE
Sbjct: 121 SKWFDNKHFTCPLCRSIE 138

[Close]

BLAST of Spg025871 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 6.2e-33
Identity = 73/140 (52.14%), Postives = 102/140 (72.86%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPS-SSEEEYDSENG 60
           MG+S++P ++EGV  +P+LVMNTV+S++ +KN+VRSV+ M+S+  + + + E++ D E+ 
Sbjct: 1   MGISHYPTASEGV--MPMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS 60

Query: 61  -RERRISITQFKSLRQSFNGETEDGSASRCVMAECCVCLCGFEADEEVSEL-SCKHFFHK 120
            R RRISIT F+SL ++       GS +     +CCVCLCGF+ +EEVSEL SCKH+FH 
Sbjct: 61  KRRRRISITHFESLCEN------RGSRNEREAMDCCVCLCGFKEEEEVSELVSCKHYFHS 120

Query: 121 GCLSKWFDNKHITCPLCRSI 138
            CL KWF N H TCPLCRSI
Sbjct: 121 ACLDKWFGNNHTTCPLCRSI 132

[Close]

BLAST of Spg025871 vs. TAIR 10
Match: AT1G24580.1 (RING/U-box superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 63/118 (53.39%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 21  MNTVMSMAFLKNLVRSVIQMMSASASPSSSEEEYDSENGRERRISITQFKSLRQSFNGET 80
           MNTV+S+  LKN+VRSV Q++++    S   ++   ++   RRISITQFKSL ++   E 
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEE 60

Query: 81  EDGSASRCVMAECCVCLCGFEADEEVSEL-SCKHFFHKGCLSKWFDNKHITCPLCRSI 138
           E+         ECCVCLCGF+ +EEVSEL SCKHFFH+ CL  WF N H TCPLCRSI
Sbjct: 61  EEKG------VECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHTTCPLCRSI 112

[Close]

BLAST of Spg025871 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-19
Identity = 58/148 (39.19%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEE---YDSE 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS + ++  S SPSSS        SE
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  NGRERR---ISITQFKSLRQSFNGETED---GSASRCVMA---ECCVCLCGFEADEEVSE 120
           N          + Q +S  + F   T      S  RC      EC VCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKGCLSKWFDNKHITCPLCRS 137
           L C H FHK CL KW D  +ITCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Spg025871 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-19
Identity = 58/148 (39.19%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 1   MGLSNFPHSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASASPSSSEEE---YDSE 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS + ++  S SPSSS        SE
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  NGRERR---ISITQFKSLRQSFNGETED---GSASRCVMA---ECCVCLCGFEADEEVSE 120
           N          + Q +S  + F   T      S  RC      EC VCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKGCLSKWFDNKHITCPLCRS 137
           L C H FHK CL KW D  +ITCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Spg025871 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-09
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 71  SLRQSFNGETEDGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKGCLSKWFDNKHIT 130
           +L + F+    D +AS     +C VCL   +  EEV +L C+H FHK CL  W  + +  
Sbjct: 57  NLNRLFSYRYSDNAAS-----DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFN 116

Query: 131 CPLCRS 137
           CPLCRS
Sbjct: 117 CPLCRS 117

The following BLAST results are available for this feature:

BLAST of Spg025871 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151826.1	1.1e-63	91.43	probable E3 ubiquitin-protein ligase XERICO [Momordica charantia]	[more]
XP_022984317.1	2.4e-63	92.09	probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]	[more]
KAG6601543.1	5.4e-63	92.81	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]
XP_022957080.1	5.4e-63	92.81	probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]	[more]
XP_023523084.1	5.4e-63	92.09	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023...	[more]

BLAST of Spg025871 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	5.5e-18	39.19	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9ZU51	3.0e-08	40.91	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q8LDB8	1.1e-07	51.11	E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g631...	[more]
Q93Z92	3.3e-07	51.06	E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g116...	[more]
Q7ZW78	3.3e-07	54.55	E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2	[more]

BLAST of Spg025871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFU2	5.3e-64	91.43	probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1J1V9	1.2e-63	92.09	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GZI7	2.6e-63	92.81	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7SYA9	5.4e-61	88.41	Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KTI8	1.2e-60	88.41	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 P...	[more]

BLAST of Spg025871 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67856.1	6.2e-33	52.14	RING/U-box superfamily protein	[more]
AT1G24580.1	1.6e-28	53.39	RING/U-box superfamily protein	[more]
AT2G04240.1	3.9e-19	39.19	RING/U-box superfamily protein	[more]
AT2G04240.2	3.9e-19	39.19	RING/U-box superfamily protein	[more]
AT2G01150.1	2.1e-09	40.91	RING-H2 finger protein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 93..134 e-value: 3.3E-4 score: 30.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 92..135 e-value: 2.2E-11 score: 43.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 93..135 score: 11.884405
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 92..135 e-value: 0.007 score: 8.5
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 39..138 e-value: 7.7E-16 score: 59.5
None	No IPR available	PANTHER	PTHR47258:SF3	F21J9.24-RELATED	coord: 1..137
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 92..136
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg025871.1	Spg025871.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding