Spg025862 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg025862
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	transcription factor PRE6-like
Location	scaffold7: 2317811 .. 2319254 (-)
RNA-Seq Expression	Spg025862
Synteny	Spg025862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATATACATACAAAAATAAATAAATAAAAAAAAATAAAAACCGTAAGCAAGTTGAAAGTTTTAGCCCCAGTTTGGAGACAGATCGAGCAGGGACGGTATGGCTATGGGCGCATGCAGCTTTTTAATTTTTTTTTTTTTTAAAAAAAGAAAATTAATAATAAAATAGATTTTTTGTGTGTGCGTTTGAAGGTTATTATTTAATAATTAGCAGTATTAGGGCAGTGGTAGAGTTGTCCGGTTCGACCCCAACAAATAGTGGATTACGAATTGTATAAACACTTGGGTTTCTTTTCATGGCTCCCATATCTCTTTGTCCATCAACATTAGTATTATTCTTATTGGCCTGTCTCAAATCAAATTAAACAGCTGCAACCTTGCTAATAATATAAATTAATTCCTCTCTTTTCAATCATTATAAAATGTATTAACCACTCATATTTCATATCATATCTTATAACCCTCTTATGCTATGCTATGCTTCTATTTCTCTTTCCCATATATAAATTGGTTTTTAGCTTGCCCTTTCTCCAACAATAACATTTTACTTCATTTGGGGTTCTCTCAGCTCCCTCTGGCCCCCTCTCTTTCTCTCTCAAACTCCCAATATATTTTTTCCCCCTACCTATAGCCTTAGCTAGCAGAAGCTGCTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAGAAAATCTGACACAGCCACAAACTTCTCCTTAATTTTGAAACAAACAACAAAAATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGCTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGGCCGTTCCTCCTCCAGGGTATTTATCTCTTTTCCTTTCTTCTCCTTTAGCTTCTTTCAATTTAATTTCTACACTTTTTCATTTTTATTTCAACCTTTCTAGTCCCCATACATCAATAAAAACATTAAACTCAAGCTTTTAATTCAATTTTTTTTTTACAACCAAATGTCTAGTAGTGTATAAATTAATGTAGGGAAATTTGATTAAAATCTCAACTAAATGCAGCATTAATTAATTGGTGTGAATAATTATGGTGTTCAGGTATCAGCTTCTAAGGTTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGACGACTTAAGCGACCGATTATCAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAATAATGTTCAATTCCCCCAAGTTTCTCTCTCAACCAGCTCATTCTTCTTCAATAGAATTTGGTCTTCGGCAGCAGCTCGCACATTTGGATATGCCTACACACACTCATTTCAAACCTTCGTCTTTAGCTATCATGCAATTAATTAATAGATATATATATATATATAAATATAAAGTCGATCT

mRNA sequence

ATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGCTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGGCCGTTCCTCCTCCAGGGTATCAGCTTCTAAGGTTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGACGACTTAAGCGACCGATTATCAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

Coding sequence (CDS)

ATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGCTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGGCCGTTCCTCCTCCAGGGTATCAGCTTCTAAGGTTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGACGACTTAAGCGACCGATTATCAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

Protein sequence

MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Homology

[Close]

BLAST of Spg025862 vs. NCBI nr
Match: XP_038893351.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Spg025862 vs. NCBI nr
Match: XP_022151230.1 (transcription factor PRE6-like [Momordica charantia])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Spg025862 vs. NCBI nr
Match: XP_004135185.1 (transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa_009290 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Spg025862 vs. NCBI nr
Match: XP_008446331.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Spg025862 vs. NCBI nr
Match: XP_022968308.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 158.3 bits (399), Expect = 3.3e-35
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSRSRRS+VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Spg025862 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.9e-27
Identity = 72/93 (77.42%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 2  STRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRS 61
          S RSSRSR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIRN 62

Query: 62 LQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Spg025862 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.1e-25
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 5  SSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQR 64
          SSR  R A  S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          E DDLSDRL++LL S DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Spg025862 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-24
Identity = 66/95 (69.47%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+R SRSR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Spg025862 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-24
Identity = 66/95 (69.47%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+R SRSR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Spg025862 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24
Identity = 65/94 (69.15%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R SRSR+S+  SR IS+DQI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSSGTSR-ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          +L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of Spg025862 vs. ExPASy TrEMBL
Match: A0A6J1DAM4 (transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Spg025862 vs. ExPASy TrEMBL
Match: A0A0A0KQJ7 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Spg025862 vs. ExPASy TrEMBL
Match: A0A1S3BFH5 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Spg025862 vs. ExPASy TrEMBL
Match: A0A6J1HXN1 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSRSRRS+VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Spg025862 vs. ExPASy TrEMBL
Match: A0A6J1G268 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSRSRRS+VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Spg025862 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 7.1e-28
Identity = 72/93 (77.42%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 2  STRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRS 61
          S RSSRSR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIRN 62

Query: 62 LQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Spg025862 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 114.4 bits (285), Expect = 5.1e-26
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 5  SSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQR 64
          SSR  R A  S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          E DDLSDRL++LL S DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Spg025862 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-25
Identity = 65/94 (69.15%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R SRSR+S+  SR IS+DQI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSSGTSR-ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          +L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of Spg025862 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 107.8 bits (268), Expect = 4.7e-24
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R  RSR+++  SR ISDDQ+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR
Sbjct: 1  MSNR--RSRQTSNASR-ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
           L REVD+LSDRLS+LL S D +S +AA+IRSLLM
Sbjct: 61 KLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Spg025862 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-22
Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MSTRSSRSRRSAVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R SR   SA     ISD+Q+ DL+SKL+Q++PEI   R S + SASKVLQETCNYIR
Sbjct: 1  MSNRRSRQSSSA---PRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          +L REVD+LS+RLS+LL S D +S +AA+IRSLLM
Sbjct: 61 NLNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

The following BLAST results are available for this feature:

BLAST of Spg025862 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893351.1	7.1e-38	97.89	transcription factor PRE6-like [Benincasa hispida]	[more]
XP_022151230.1	6.0e-37	95.79	transcription factor PRE6-like [Momordica charantia]	[more]
XP_004135185.1	2.3e-36	95.79	transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa...	[more]
XP_008446331.1	5.1e-36	94.74	PREDICTED: transcription factor PRE6-like [Cucumis melo]	[more]
XP_022968308.1	3.3e-35	92.63	transcription factor PRE6-like [Cucurbita maxima]	[more]

BLAST of Spg025862 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	9.9e-27	77.42	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9LXG5	7.1e-25	70.00	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
B8APB5	6.0e-24	69.47	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	6.0e-24	69.47	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
Q9CA64	7.9e-24	69.15	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]

BLAST of Spg025862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAM4	2.9e-37	95.79	transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE...	[more]
A0A0A0KQJ7	1.1e-36	95.79	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1	[more]
A0A1S3BFH5	2.4e-36	94.74	transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1	[more]
A0A6J1HXN1	1.6e-35	92.63	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 ...	[more]
A0A6J1G268	2.1e-35	92.63	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=...	[more]

BLAST of Spg025862 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	7.1e-28	77.42	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	5.1e-26	70.00	BANQUO 2	[more]
AT1G74500.1	5.6e-25	69.15	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT3G28857.1	4.7e-24	66.32	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	1.2e-22	62.11	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..79
None	No IPR available	PANTHER	PTHR46446:SF11	TRANSCRIPTION FACTOR PRE6	coord: 1..95
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 18..79 e-value: 1.4669E-18 score: 70.4099
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 21..89 e-value: 2.3E-9 score: 39.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 21..82
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 21..63 e-value: 3.4E-7 score: 30.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 7..62 score: 10.530987
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg025862.1	Spg025862.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity