Spg025860 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg025860
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
Location	scaffold7: 1954570 .. 1960374 (-)
RNA-Seq Expression	Spg025860
Synteny	Spg025860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGGGAATTTTCTTCCCCGTCACTCCAATTCCATGGAGTTCCAATTTCAAGTGCACTCTCTGTCCCGTTCGTCGCCCTTTCCCGCGTACTGTAAGGTCTTCTTCTTCTTTGAATTCACAGCGAAGTTACAGAGGGCCGAAGCCTTCGAGGGATTGGGTCGCCGATTGGGTATCCAAGAACGACGATGCCGTTCGGAGCTTTCCTATTTACGTGGGAGGAATTTCTCTATTGGCTGTCCTCTTTAATCGCGCCGTTTCTGGCATTGCTCCCGTCGCCGATGCCAGCAGGTTCACTACTAAAATTTAAACTACTTTATCGAATGCTGTTTATTTCCACAAGTTACTATGCATTGCTTATTCGGGAATATTGTAAATGTATCTCTACAATGAGTAGTAAATTAAGAGAAGAAATCAGCAATTCGTTGAGGTGGGAATGGAAATTCTATCTCCGATAACTTTGTTGTTGATCATATTTTCCTACTTTGGCGGCGTGATTCTGCAACTAACATTCGCTTTGTGCTCTGACTTAACGTAATCAGTTGTTCTATTTATAATAATAAACTTTTATCAATTTGAGCAGTTCACAGTCAAGAGCTGATCTATTGACCCTTGGACTAGCTGTTACGAATGTCTTGGCTGGTCTTGTGTGGCTGTCCATCAGGCCGAAATCTATAACACCGGTGAGGGTTTACGATGAGATTTTCATACTCAACATTTATCAGCTCAGGAGGTGCCTGTTCTGTCCCTTTTGATTTTTCTCCCCTACTTTTGTTTTCCGTATCAGGTAGATCCACAAGGGGTGGCATGTGAGAGGATATGCTCCAGTCTCCCTGATCTTGTAACATCCGAGTTGTTATGGTAATATAGTTTATATAGTTTTCTCTATGATATTTTAAAACTCTGAATTTTATCAAGTATTGAAGCCGGTTAATATCATTGAAAATCACTTTTTGATAGGGTGATTTGTTTCGCTTGGTTAATGGAGATAGATGAGTGAAACTTTAATAGCATGCTTGAGAATTATGAATTTTTATCTATTAGTTTTCCTATTATCTTACAGAATTTTACGATCCATATGTCATTTTCTTTCCCCTCATTGTCACATGTTCATGGAAATGTTCAGTGACAGATAACTTCACATTCCATGTATCTGATAAATTACTTTTGGTATTTGATGCTAAGGATTCTGAGAGGAAAAAGGAAAAATCCTGGATTAGGTGGTTAATGGTTACTTTTTGCTGCCTACTCTAGGGTATGGAGGTCTCTGTCAGAGGTGACATGCTGCAGGTCTCTGGTTGTTGTTTATGATGGTATGTGTATATTTCAAGTTGGTTTTGCTGCTGAATCAGCTGAGGGTGATGGTGAGGCCGAATATGTGGAAGCTAGTAAATTGATGCAGGGATCACTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAGTAAATGACCTGTGCACCGAGACCATCACACAATGTACGACTTGATTGTCGTGCAATTGTAAATATCTGCGACTGTTCGTTTTGAGAGACTATCTTTCCTGTTTTTGTAGAGAGCTACTTGGCCAATCTCTTTCTTTATCCAGGGAAGTCGGAACTGCCATTTCTTCCCTCAAATACTCAGGTACATTGCTCAATACTATTCATATTGTTGTTAGATTTCTTCCTTCTTTTTTCTTTTATTTTTCTGCTATATATAACTAGTAGATAGTTTTCTACAGTTGCTTCATTCTTTGGTATTTGTCACTCTTGATAACTAGTAGACATAAACTAATAAACTCGTTTTTGTTCTTCTATCATGTATGACTTATTATGGTTCAGAGTGCAATTGAAGCTTGAGTTGGAAGCATTATTTGGTGAACTTGAAGAATAATTTGGTTAATTGCATGCTCAATTAGCTATTGCGTTTCCACATATTCTCTTTCAGAACTTGGGAGTTCTTCTCCCATCATGCTGGCTAAAAAGAGTCTCTCCTTTGTGGCTAAATAGAGTCTCTACTTGTTCACTGAAACCAAACTCCGCTACTTGGCAAAGTAGGGAGGAATGTGATGAAATTTAAAATTTGGTTTTTAATTTCCTAGGCTCTATCAATTAAATAGGATTTGATTCTTCACCTGTTTACTTTATGGGCTTTCTTATTTAGAAGATGGTGGCTATTTCAACACCTCAAAACTTGAAATTTTGTTATAGAATCTAAGAGATTGGTACTGATCTCTAGAACTGTTTCTAAAACTAATTGTGTTATTGTGTGCTTGAATTCCCTTGCTCACCAGCCCTTGTTGGTGAAGGAGGAATATTTGTTATTTTTTAAAAAAGAGCAAAAAATTAAAAAAGATAATAAATCATGAGAACAAAGTATGGAAGGTAACTTTATAAAAATAGTTGCCTTATCTTATTTCTACTAGTTTTTTTGTTTTTTTTCCAAAAGAACAAAAACTGTTTTGAACTCAACTTCTATACAGCACATAGCATCTCTCTCTCACGTATGCCTGGATAACTTGTAAATTGAAACCACTGCTTTCTAAGACAAGTCTGCTATTCTAGGCTGTAATCTTGCAACCACTTGGGGAGAAGGGTATTGCCATAATTGGTGGCAACACTATTAGGGGTTTCACAACCTCTGATCAGGTACTCTCGTTCTTTAAGCCTCTTGGCTCTTTTCTTAATGAAACTCTTGTTAATATTTGTGGAATTCTTTTCTCGATCATGTGAAAATTGGTGCCTAAGCCCCATTTTCAACCCCCCCCCCCCCCCCCAACACCCACACACACACACACATTATCTGCATATTGATGCTGACGACATTTTCCTCTTTTATTCCTATGGCATAATTACAATCTTGTGCTTAAATTTTGAAATGTTCACAGGCATGGATTTCACTAGTTGGAGAGAAGCTGGATGCTACTCTATTGAAATATTCAAATAATTTTCAACCAGCGGTAAATTTGAGCTCAAAGGGGGACTGAACTGTGATGGACAAAGACCAACATGGTTATTAGATTGTTCATTTTATTTATTTCCAATGTTTGTAAACCATTATTGGCCAGAAAGAGATATAATATTGAAGCCCCTTTAAAGGCCAGGCGAAGGAACTCAACTAAGTAGTTGATTTCAATGTATATTCTATAAATCATAAATGCAAAAGCTTCTCCTTTTCAACTACTCATTGAAGGTAATGTCTGGTTCACTCTCTTTTATGCATTTGCTGTCTGTGGCAAAGCTGAGTGCATTCTTAGATATGTGACAGCAGATGATTTATTCAAAATTGAAGTATGAATCAGAAAGAATTTCATTCCAGCATCTGAAAAGTGTAAGTTAAAAAACCTGTAACTAAACCATAGCATGTCCATGGAGTAAAAAAAATTAATCAGATAAACATTCTTTTTGTAGAAAAAAATCAGTTGCTTGCTGTATGATTACTGTGTACAGGTCACTAAGCTGCAGGTTGCCAAGAGTTGTTAACCAGAAGCTTTCTCCCATGGTAGGGACCCTGTCAAAGGATCAGAGAACAAGGTCTGTATAAAATCTCTCAGTCCAGTGTCCCAAACTTCACAGAACTGCAACTTCCAATTGGGTGGTTCGATTGCCTCTGTCCCAAGCCCAGGTGCTCTATCCTTCGACCCTTCATTCTGTGCCTCCTGCCAATCTACAACATAGGTAGCTACTCTTCTGAAAAATTTTGCTCGAAATGTTTCCCACACTTGGTATTTGTAATGGTTTATAACAGCATTGCCTTTTGGTACATCAAAAAACCCAAATCCTTGTTTCAACCGAAAGTGGTGAACGACATTGAGAAGTGTTATGTCAAGCAAGTCTGGCCGGACAAAAGATTTGTGTCTCTCGGGACTCTGGAGCCGGCAAGTGTACCCCATTGTTACTCCCTGGGGTGGATGTGATGTCAAACCCGATGGTCCAAAGCTATGACATGCTGTTCTAATCTCTGCAATGGCTGTTGAATTGGAAGTTGAAGCAGATGAGTCGGCAATGAGAGAATGAAGGGCATTGCGGCCAGCAGTATGGTATTCGTGCTGATGACGATACTTTGATGGGAAGTAGAAAAACTCGTCAACATCAAAGAAACCAACCCACTTACATTCATCTCTAGCTCTCAAAGCACAATGTGAGAAACCTGCTTCTTGGGTTTTAAGCCATGGCCAGGTCAGCCTACTGATATTGTAGTCTTCCAGGTTGAGCTCTCTAATGACTTCTTCAATGCCATCATCACTATTGTTGTCATAGATGAACCAGCGCCCCACTCCAAGCCAGGCATGGTACATAATCCACTCACGAAGTGCTGCCGCTTGGTTCCACACCATTGTGCACACACAAAGCTCATGTTTTTCCTGATTTCCCTGCAGCTTATTCAGCTTGGAGTTGAAGAGTCTGGCCACTGAGGGCAGAGCCACCTGAAGACGGGCCTTTGTATTGGCACTGCCACGGCTCACGGTAACTCGAATTCCCTTTTCCTTGTCTAAAGTGCTCAGTACACCAGCCGGCAGGGAGCACCTAATAATTTCTTGAGCTGCAGTTACTGCTTTTGTTGTAAGCACATATTCTCCGTGATTGTTGGAATTTCCCAGTCTAAAGTGGCAACTGAATTCAGTCGGATTTGATTCCTTGTGTGGTCGGAGATTTAGTCCCTTCGCAAACACCACAACTGTATCGCCATCAATTGCTGCCTCATAAACCAGCCTCTCCCACGAGGCAACTGGCTGCCTATTTCTGACCAACCAATGGTCATCAGCTCCCACGCCGCCCCTCCTCAAGTCCACGGCGGAGGCCGAGTAATTCAGTGGCGGTAGTGGACATCTGGCAATCGATCGGAACTCATCGTACTTATCCATGGACAGAACTGGCCGTTTGAAAGTCTCTTGGTTCAAACCTCTAGCGACTGATTTGTGGTATAAACAATCCAATTTCTCATCTTGGCTGAATTCGCCGGTGACCATCAAAAGCAAATGGTCTGGGAACAAGACTCGACTTTCGATTCTCAAAGGCGAATACTTACTGCTCAAAGAATTGTCAAGTGTGGACTTACTAGCAGAAGTGGACAGACGAGAAAGAGTGGTGGAAGAGGCATCGAGAACCGGCCGGAACGATGCGGCCGCTATCGAGAACCACCTACTCGAAGAGAGAAACAAGAGGAAAGCAAAAAAGGAGAGGCAAAGAAACAGAGATCTCCGAGTAAAGAACTGAACGTGCGAGCTGGACCTGCCAAAGCGCTTCCTCTTCCGCCGCTGCTGTTCCCAATCCATTAATCCAAAATTCAAACCGAACCCAAATCAGAAAAAAGCTCAACTGCGGCGCAGATCCGGTCAGATGAAAGCAGAAGCAAGTTCCTCGAGCTGGGGTTTTTCCGATAACCTTTGTCTGTCTGTCTGTCGGAGGTGACAAGAAGAACCTCTAAAGCCTGAGCTTGTAATTACTGGGGAAGGGAGTTCATTAGTTAAAAGAAAACTAAAAAGATTCGGCTGTGATGATAATGACGAAGCTGCTTGATTGCTTACTGCTTAGAGAGGTGGACTTTTATTAACAGAGAGGAAGCGTGAACATCACTCTCTCCCTTGTCCTGCTCCTGCTGCCAGACCAGACCAGACCATCGATTTTTTTTTTCTTTTTTCTTTTTTCTTTTTCCAAAGAAATATATTTTGCAGCTTGAAAAATACTCTCTTTTTCTTATTTTAATTGGCCCATACCATACCACATGCTGGCTTTTATGTTTGTTTTCTCTTCCAAACCCCTTTTGTCAAACAAGCCGTGTTTTTGTTCAGAAGAGTAAATGATTAGCTGGAAAATAGAC

mRNA sequence

ATGGAAGCGGGAATTTTCTTCCCCGTCACTCCAATTCCATGGAGTTCCAATTTCAAGTGCACTCTCTGTCCCGTTCGTCGCCCTTTCCCGCGTACTGTAAGGTCTTCTTCTTCTTTGAATTCACAGCGAAGTTACAGAGGGCCGAAGCCTTCGAGGGATTGGGTCGCCGATTGGGTATCCAAGAACGACGATGCCGTTCGGAGCTTTCCTATTTACGTGGGAGGAATTTCTCTATTGGCTGTCCTCTTTAATCGCGCCGTTTCTGGCATTGCTCCCGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTATTGACCCTTGGACTAGCTGTTACGAATGTCTTGGCTGGTCTTGTGTGGCTGTCCATCAGGCCGAAATCTATAACACCGGTGAGGGTAGATCCACAAGGGGTGGCATGTGAGAGGATATGCTCCAGTCTCCCTGATCTTGTAACATCCGAGTTGTTATGGGTATGGAGGTCTCTGTCAGAGGTGACATGCTGCAGGTCTCTGGTTGTTGTTTATGATGGTATGTGTATATTTCAAGTTGGTTTTGCTGCTGAATCAGCTGAGGGTGATGGTGAGGCCGAATATGTGGAAGCTAGTAAATTGATGCAGGGATCACTCTATCAAGGAATTCTCAAATCTCAAGCTCAGAGCTACTTGGCCAATCTCTTTCTTTATCCAGGGAAGTCGGAACTGCCATTTCTTCCCTCAAATACTCAGGCTGTAATCTTGCAACCACTTGGGGAGAAGGGTATTGCCATAATTGGTGGCAACACTATTAGGGGTTTCACAACCTCTGATCAGGCATGGATTTCACTAGTTGGAGAGAAGCTGGATGCTACTCTATTGAAATATTCAAATAATTTTCAACCAGCGGTAAATTTGAGCTCAAAGGGGGACTGA

Coding sequence (CDS)

ATGGAAGCGGGAATTTTCTTCCCCGTCACTCCAATTCCATGGAGTTCCAATTTCAAGTGCACTCTCTGTCCCGTTCGTCGCCCTTTCCCGCGTACTGTAAGGTCTTCTTCTTCTTTGAATTCACAGCGAAGTTACAGAGGGCCGAAGCCTTCGAGGGATTGGGTCGCCGATTGGGTATCCAAGAACGACGATGCCGTTCGGAGCTTTCCTATTTACGTGGGAGGAATTTCTCTATTGGCTGTCCTCTTTAATCGCGCCGTTTCTGGCATTGCTCCCGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTATTGACCCTTGGACTAGCTGTTACGAATGTCTTGGCTGGTCTTGTGTGGCTGTCCATCAGGCCGAAATCTATAACACCGGTGAGGGTAGATCCACAAGGGGTGGCATGTGAGAGGATATGCTCCAGTCTCCCTGATCTTGTAACATCCGAGTTGTTATGGGTATGGAGGTCTCTGTCAGAGGTGACATGCTGCAGGTCTCTGGTTGTTGTTTATGATGGTATGTGTATATTTCAAGTTGGTTTTGCTGCTGAATCAGCTGAGGGTGATGGTGAGGCCGAATATGTGGAAGCTAGTAAATTGATGCAGGGATCACTCTATCAAGGAATTCTCAAATCTCAAGCTCAGAGCTACTTGGCCAATCTCTTTCTTTATCCAGGGAAGTCGGAACTGCCATTTCTTCCCTCAAATACTCAGGCTGTAATCTTGCAACCACTTGGGGAGAAGGGTATTGCCATAATTGGTGGCAACACTATTAGGGGTTTCACAACCTCTGATCAGGCATGGATTTCACTAGTTGGAGAGAAGCTGGATGCTACTCTATTGAAATATTCAAATAATTTTCAACCAGCGGTAAATTTGAGCTCAAAGGGGGACTGA

Protein sequence

MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRSYRGPKPSRDWVADWVSKNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVWLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDGMCIFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAVNLSSKGD

Homology

[Close]

BLAST of Spg025860 vs. NCBI nr
Match: XP_022984820.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 542.3 bits (1396), Expect = 2.6e-150
Identity = 276/303 (91.09%), Postives = 286/303 (94.39%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRSYRGPKPSRDWVADWVS 60
           MEAGIFFPVTPI WSS+ KCTLCPVRR FPR +R +SSLNSQ SYRGPKPSRDWVA+WVS
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIR-ASSLNSQASYRGPKPSRDWVAEWVS 60

Query: 61  KNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120
           KN+DAVRS PIYVGGISLL VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLV
Sbjct: 61  KNNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLV 120

Query: 121 WLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDGMC 180
           WLSIRPKSITP  V+PQGV CERICSSLPDLVTSELLWVW+SLSEVTCCRSLVVVYDGMC
Sbjct: 121 WLSIRPKSITP--VNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMC 180

Query: 181 IFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFLPS 240
           IFQVGFAAESAEGDGEAE+VEASKLMQG LY+GILKSQAQSYLANL LYPGKSELPFLPS
Sbjct: 181 IFQVGFAAESAEGDGEAEHVEASKLMQGLLYKGILKSQAQSYLANLSLYPGKSELPFLPS 240

Query: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAVNLSS 300
           NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN QPA  LSS
Sbjct: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNLQPAAKLSS 300

Query: 301 KGD 304
           +GD
Sbjct: 301 RGD 300

[Close]

BLAST of Spg025860 vs. NCBI nr
Match: XP_022956789.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita moschata] >KAG6601389.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 542.3 bits (1396), Expect = 2.6e-150
Identity = 276/303 (91.09%), Postives = 286/303 (94.39%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRSYRGPKPSRDWVADWVS 60
           MEAGIFFPVTPI WSS+ KCTLCPVRR FPR +R +SSLNSQ SYRGPKPS DWVA+WVS
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIR-ASSLNSQASYRGPKPSTDWVAEWVS 60

Query: 61  KNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120
           KN+DAVRS PIYVGGISLL VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLV
Sbjct: 61  KNNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLV 120

Query: 121 WLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDGMC 180
           WLSIRPKSITP  V+PQGV CERICSSLPDLVTSELLWVW+SLSEVTCCRSLVVVYDGMC
Sbjct: 121 WLSIRPKSITP--VNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMC 180

Query: 181 IFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFLPS 240
           IFQVGFAAESAEGDGEAE+VEASKLMQGSLY+GILKSQAQSYLANL LYPGKSELPFLPS
Sbjct: 181 IFQVGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPS 240

Query: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAVNLSS 300
           NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN QPA  LSS
Sbjct: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNLQPAAKLSS 300

Query: 301 KGD 304
           +GD
Sbjct: 301 RGD 300

[Close]

BLAST of Spg025860 vs. NCBI nr
Match: XP_023513804.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 537.3 bits (1383), Expect = 8.3e-149
Identity = 272/303 (89.77%), Postives = 284/303 (93.73%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRSYRGPKPSRDWVADWVS 60
           MEAGIFFPVTPI WSS+ KCTLCPVRR FPR +R +SSLNSQ SYRGPKPS DWVA+WVS
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIR-ASSLNSQASYRGPKPSTDWVAEWVS 60

Query: 61  KNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120
           KN+DAVRS PIYVGGISLL VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLV
Sbjct: 61  KNNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLV 120

Query: 121 WLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDGMC 180
           WLSIRPKSITP  V+PQGV CERICSSLPDLVTSELLWVW+SLSEVTCCRSLV+VYDGMC
Sbjct: 121 WLSIRPKSITP--VNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVIVYDGMC 180

Query: 181 IFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFLPS 240
           IFQVGFAAESAEGDG+ E+VEA KLMQGSLY+GILKSQAQSYLANL LYPGKSELPFLPS
Sbjct: 181 IFQVGFAAESAEGDGDGEHVEACKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPS 240

Query: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAVNLSS 300
           NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN QPA  LSS
Sbjct: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNLQPAAKLSS 300

Query: 301 KGD 304
           +GD
Sbjct: 301 RGD 300

[Close]

BLAST of Spg025860 vs. NCBI nr
Match: KAG7032167.1 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 536.2 bits (1380), Expect = 1.8e-148
Identity = 275/304 (90.46%), Postives = 285/304 (93.75%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRSYRGPKPSRDWVADWVS 60
           MEAGIFFPVTPI WSS+ KCTLCPVRR FPR +R +SSLNSQ SYRGPKPS DWVA+WVS
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIR-ASSLNSQASYRGPKPSTDWVAEWVS 60

Query: 61  KNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120
           KN+D VRS PIYVGGISLL VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLV
Sbjct: 61  KNNDGVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLV 120

Query: 121 WLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDGMC 180
           WLSIRPKSITP  V+PQGV CERICSSLPDLVTSELLWVW+SLSEVTCCRSLVVVYDGMC
Sbjct: 121 WLSIRPKSITP--VNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMC 180

Query: 181 IFQVGF-AAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFLP 240
           IFQVGF AAESAEGDGEAE+VEASKLMQGSLY+GILKSQAQSYLANL LYPGKSELPFLP
Sbjct: 181 IFQVGFAAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLP 240

Query: 241 SNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAVNLS 300
           SNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN QPA  LS
Sbjct: 241 SNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNLQPAAKLS 300

Query: 301 SKGD 304
           S+GD
Sbjct: 301 SRGD 301

[Close]

BLAST of Spg025860 vs. NCBI nr
Match: XP_038892078.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 529.6 bits (1363), Expect = 1.7e-146
Identity = 273/303 (90.10%), Postives = 279/303 (92.08%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRSYRGPKPSRDWVADWVS 60
           MEAGIFFPVTPI WSSNFK T CPVRR FPR +R SSS  SQ SYRGPKPSRDWVADWVS
Sbjct: 1   MEAGIFFPVTPILWSSNFKRTHCPVRRSFPRIIRVSSS-TSQGSYRGPKPSRDWVADWVS 60

Query: 61  KNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120
           KNDDAVRS PIYVGGISLL VLFNR VSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV
Sbjct: 61  KNDDAVRSLPIYVGGISLLLVLFNRTVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120

Query: 121 WLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDGMC 180
           WLSI+PKSITP  V+PQGVACERICSSLPD+V SELLWVW SLSEVTCCRSLVVVYDG C
Sbjct: 121 WLSIKPKSITP--VNPQGVACERICSSLPDIVKSELLWVWTSLSEVTCCRSLVVVYDGKC 180

Query: 181 IFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFLPS 240
           IFQVGFAAESAEGDGEAE+VEA KLMQGSLY G LKSQAQSYLANL LYPGKSELPFLPS
Sbjct: 181 IFQVGFAAESAEGDGEAEHVEAGKLMQGSLYTGNLKSQAQSYLANLSLYPGKSELPFLPS 240

Query: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAVNLSS 300
           NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQP   LSS
Sbjct: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPTAKLSS 300

Query: 301 KGD 304
           KG+
Sbjct: 301 KGN 300

[Close]

BLAST of Spg025860 vs. ExPASy Swiss-Prot
Match: Q6NQK9 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB4 PE=1 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 3.2e-103
Identity = 196/290 (67.59%), Postives = 234/290 (80.69%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQ--RSYRGPKPSRDWVADW 60
           MEA I      IPWS+N + +  P+   FPR +R+SSS  SQ  ++Y GPKP ++ VAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSKNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +SKNDD VRS PIYVGG SLLAVLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDG 180
           LVWLSIRPKSITP  V+P+GV C+ + S LP  + SELLW W SL   TCC+SLV+VY+G
Sbjct: 121 LVWLSIRPKSITP--VNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNG 180

Query: 181 MCIFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFL 240
           +C+ Q+G  AES E D +   V+  KLMQGS+Y+G++KS+AQSYLANL LYPG+SELPFL
Sbjct: 181 ICLIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFL 240

Query: 241 PSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKY 289
           P+NTQAVILQPLG+KGIA+IGGNTIRGFT+SDQAWIS +GEKLDATL +Y
Sbjct: 241 PANTQAVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 285

[Close]

BLAST of Spg025860 vs. ExPASy TrEMBL
Match: A0A6J1J9M5 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482990 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.2e-150
Identity = 276/303 (91.09%), Postives = 286/303 (94.39%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRSYRGPKPSRDWVADWVS 60
           MEAGIFFPVTPI WSS+ KCTLCPVRR FPR +R +SSLNSQ SYRGPKPSRDWVA+WVS
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIR-ASSLNSQASYRGPKPSRDWVAEWVS 60

Query: 61  KNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120
           KN+DAVRS PIYVGGISLL VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLV
Sbjct: 61  KNNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLV 120

Query: 121 WLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDGMC 180
           WLSIRPKSITP  V+PQGV CERICSSLPDLVTSELLWVW+SLSEVTCCRSLVVVYDGMC
Sbjct: 121 WLSIRPKSITP--VNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMC 180

Query: 181 IFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFLPS 240
           IFQVGFAAESAEGDGEAE+VEASKLMQG LY+GILKSQAQSYLANL LYPGKSELPFLPS
Sbjct: 181 IFQVGFAAESAEGDGEAEHVEASKLMQGLLYKGILKSQAQSYLANLSLYPGKSELPFLPS 240

Query: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAVNLSS 300
           NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN QPA  LSS
Sbjct: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNLQPAAKLSS 300

Query: 301 KGD 304
           +GD
Sbjct: 301 RGD 300

[Close]

BLAST of Spg025860 vs. ExPASy TrEMBL
Match: A0A6J1H029 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458387 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.2e-150
Identity = 276/303 (91.09%), Postives = 286/303 (94.39%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRSYRGPKPSRDWVADWVS 60
           MEAGIFFPVTPI WSS+ KCTLCPVRR FPR +R +SSLNSQ SYRGPKPS DWVA+WVS
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIR-ASSLNSQASYRGPKPSTDWVAEWVS 60

Query: 61  KNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120
           KN+DAVRS PIYVGGISLL VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLV
Sbjct: 61  KNNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLV 120

Query: 121 WLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDGMC 180
           WLSIRPKSITP  V+PQGV CERICSSLPDLVTSELLWVW+SLSEVTCCRSLVVVYDGMC
Sbjct: 121 WLSIRPKSITP--VNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMC 180

Query: 181 IFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFLPS 240
           IFQVGFAAESAEGDGEAE+VEASKLMQGSLY+GILKSQAQSYLANL LYPGKSELPFLPS
Sbjct: 181 IFQVGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPS 240

Query: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAVNLSS 300
           NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN QPA  LSS
Sbjct: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNLQPAAKLSS 300

Query: 301 KGD 304
           +GD
Sbjct: 301 RGD 300

[Close]

BLAST of Spg025860 vs. ExPASy TrEMBL
Match: A0A6J1DCN6 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019127 PE=4 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 1.6e-142
Identity = 262/312 (83.97%), Postives = 281/312 (90.06%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRS---------YRGPKPS 60
           MEAGIFF V PI WS NFKC LCPVRR FPR +R+SSS +S  S         YRGPKP+
Sbjct: 1   MEAGIFFSVAPILWSPNFKCALCPVRRSFPRIIRASSSSSSSSSSSSSSSPGRYRGPKPT 60

Query: 61  RDWVADWVSKNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLA 120
           RDWVADWV++NDDAVRS PI+VGGISLL VLFNRAVSGIAPVADASSSQSRADLLTLGLA
Sbjct: 61  RDWVADWVTQNDDAVRSLPIFVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLA 120

Query: 121 VTNVLAGLVWLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRS 180
           VTNVLAGLVWLSIRPKSITP  V+ QGVAC+R+CSSLPDLVT ELLWVW SLSEVTCCRS
Sbjct: 121 VTNVLAGLVWLSIRPKSITP--VNTQGVACKRMCSSLPDLVTFELLWVWESLSEVTCCRS 180

Query: 181 LVVVYDGMCIFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPG 240
           LVVVYDGMC+FQVGFAAES EGDGEAE+V+AS+LMQGSLYQGI KS+AQSYLANL LYPG
Sbjct: 181 LVVVYDGMCLFQVGFAAESVEGDGEAEHVDASELMQGSLYQGIRKSRAQSYLANLSLYPG 240

Query: 241 KSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN 300
           KSELPFLPSNTQAVILQPLG+KGIA+IGGNTIRGFTTSDQAWISLVGEKLDATL KYSNN
Sbjct: 241 KSELPFLPSNTQAVILQPLGDKGIAVIGGNTIRGFTTSDQAWISLVGEKLDATLSKYSNN 300

Query: 301 FQPAVNLSSKGD 304
           FQPAV LSS+G+
Sbjct: 301 FQPAVKLSSEGN 310

[Close]

BLAST of Spg025860 vs. ExPASy TrEMBL
Match: A0A6J1DBC0 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019127 PE=4 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 3.4e-140
Identity = 258/305 (84.59%), Postives = 275/305 (90.16%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRS---------YRGPKPS 60
           MEAGIFF V PI WS NFKC LCPVRR FPR +R+SSS +S  S         YRGPKP+
Sbjct: 1   MEAGIFFSVAPILWSPNFKCALCPVRRSFPRIIRASSSSSSSSSSSSSSSPGRYRGPKPT 60

Query: 61  RDWVADWVSKNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLA 120
           RDWVADWV++NDDAVRS PI+VGGISLL VLFNRAVSGIAPVADASSSQSRADLLTLGLA
Sbjct: 61  RDWVADWVTQNDDAVRSLPIFVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLA 120

Query: 121 VTNVLAGLVWLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRS 180
           VTNVLAGLVWLSIRPKSITP  V+ QGVAC+R+CSSLPDLVT ELLWVW SLSEVTCCRS
Sbjct: 121 VTNVLAGLVWLSIRPKSITP--VNTQGVACKRMCSSLPDLVTFELLWVWESLSEVTCCRS 180

Query: 181 LVVVYDGMCIFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPG 240
           LVVVYDGMC+FQVGFAAES EGDGEAE+V+AS+LMQGSLYQGI KS+AQSYLANL LYPG
Sbjct: 181 LVVVYDGMCLFQVGFAAESVEGDGEAEHVDASELMQGSLYQGIRKSRAQSYLANLSLYPG 240

Query: 241 KSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN 297
           KSELPFLPSNTQAVILQPLG+KGIA+IGGNTIRGFTTSDQAWISLVGEKLDATL KYSNN
Sbjct: 241 KSELPFLPSNTQAVILQPLGDKGIAVIGGNTIRGFTTSDQAWISLVGEKLDATLSKYSNN 300

[Close]

BLAST of Spg025860 vs. ExPASy TrEMBL
Match: A0A5A7ST12 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00590 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 7.1e-138
Identity = 261/303 (86.14%), Postives = 271/303 (89.44%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQRSYRGPKPSRDWVADWVS 60
           MEAGIFF VTPIPW+SNFK T   +RR FPR +R+SSS  SQRSYRGPKPS D VADWVS
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSS-TSQRSYRGPKPSTDLVADWVS 60

Query: 61  KNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120
            NDD VRS PIYVGGISLL VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV
Sbjct: 61  NNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120

Query: 121 WLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDGMC 180
           WLSIRPKSITP  V+P GV  E ICSSLPD VTSELLWVW+SLSEVTCCRSLVVVYDG C
Sbjct: 121 WLSIRPKSITP--VNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180

Query: 181 IFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFLPS 240
           I QVGFAAE AEGDGEAE VEA KLMQG LY+G+LKSQAQSYLANL LYPGKSELPFLPS
Sbjct: 181 ILQVGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240

Query: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAVNLSS 300
           NTQAVILQPLGEKGIAI+GGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPA  LSS
Sbjct: 241 NTQAVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSS 300

Query: 301 KGD 304
            G+
Sbjct: 301 NGN 300

[Close]

BLAST of Spg025860 vs. TAIR 10
Match: AT1G59840.1 (cofactor assembly of complex C )

HSP 1 Score: 376.3 bits (965), Expect = 2.3e-104
Identity = 196/290 (67.59%), Postives = 234/290 (80.69%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQ--RSYRGPKPSRDWVADW 60
           MEA I      IPWS+N + +  P+   FPR +R+SSS  SQ  ++Y GPKP ++ VAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSKNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +SKNDD VRS PIYVGG SLLAVLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDG 180
           LVWLSIRPKSITP  V+P+GV C+ + S LP  + SELLW W SL   TCC+SLV+VY+G
Sbjct: 121 LVWLSIRPKSITP--VNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNG 180

Query: 181 MCIFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFL 240
           +C+ Q+G  AES E D +   V+  KLMQGS+Y+G++KS+AQSYLANL LYPG+SELPFL
Sbjct: 181 ICLIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFL 240

Query: 241 PSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKY 289
           P+NTQAVILQPLG+KGIA+IGGNTIRGFT+SDQAWIS +GEKLDATL +Y
Sbjct: 241 PANTQAVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 285

[Close]

BLAST of Spg025860 vs. TAIR 10
Match: AT1G59840.2 (cofactor assembly of complex C )

HSP 1 Score: 376.3 bits (965), Expect = 2.3e-104
Identity = 196/290 (67.59%), Postives = 234/290 (80.69%), Query Frame = 0


Query: 1   MEAGIFFPVTPIPWSSNFKCTLCPVRRPFPRTVRSSSSLNSQ--RSYRGPKPSRDWVADW 60
           MEA I      IPWS+N + +  P+   FPR +R+SSS  SQ  ++Y GPKP ++ VAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSKNDDAVRSFPIYVGGISLLAVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +SKNDD VRS PIYVGG SLLAVLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVRVDPQGVACERICSSLPDLVTSELLWVWRSLSEVTCCRSLVVVYDG 180
           LVWLSIRPKSITP  V+P+GV C+ + S LP  + SELLW W SL   TCC+SLV+VY+G
Sbjct: 121 LVWLSIRPKSITP--VNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNG 180

Query: 181 MCIFQVGFAAESAEGDGEAEYVEASKLMQGSLYQGILKSQAQSYLANLFLYPGKSELPFL 240
           +C+ Q+G  AES E D +   V+  KLMQGS+Y+G++KS+AQSYLANL LYPG+SELPFL
Sbjct: 181 ICLIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFL 240

Query: 241 PSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKY 289
           P+NTQAVILQPLG+KGIA+IGGNTIRGFT+SDQAWIS +GEKLDATL +Y
Sbjct: 241 PANTQAVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 285

The following BLAST results are available for this feature:

BLAST of Spg025860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984820.1	2.6e-150	91.09	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]
XP_022956789.1	2.6e-150	91.09	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]
XP_023513804.1	8.3e-149	89.77	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]
KAG7032167.1	1.8e-148	90.46	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]
XP_038892078.1	1.7e-146	90.10	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 ...	[more]

BLAST of Spg025860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQK9	3.2e-103	67.59	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop...	[more]

BLAST of Spg025860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J9M5	1.2e-150	91.09	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbit...	[more]
A0A6J1H029	1.2e-150	91.09	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbit...	[more]
A0A6J1DCN6	1.6e-142	83.97	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 ...	[more]
A0A6J1DBC0	3.4e-140	84.59	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X2 ...	[more]
A0A5A7ST12	7.1e-138	86.14	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4 OS=Cucumis melo var. makuw...	[more]

BLAST of Spg025860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G59840.1	2.3e-104	67.59	cofactor assembly of complex C	[more]
AT1G59840.2	2.3e-104	67.59	cofactor assembly of complex C	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021325	Cofactor assembly of complex C subunit B, CCB2/CCB4	PFAM	PF11152	CCB2_CCB4	coord: 70..281 e-value: 1.2E-55 score: 187.8
IPR044705	COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4	PANTHER	PTHR34943	FAMILY NOT NAMED	coord: 1..290

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg025860.1	Spg025860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
cellular_component	GO:0009507	chloroplast