Spg025757 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg025757
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Location	scaffold13: 31469823 .. 31472447 (+)
RNA-Seq Expression	Spg025757
Synteny	Spg025757

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTCCAACAATGTATTTTGGTTGGAATTAGACTCGAAGAATATCCAAATGTTCTACCTTAGCCGAATTGAGCACACCTTACGTGTGCCTCCGAGCATGCTTCACCTACCTATCCTTGATGCTATTAAGGGCGAGCTAGAGAAACTATTCCTGGATAAGGTTTGTGTAAAATTTGTATGTTAACTTGATTAACCCTTTTCAATTTACTCTGTGCCCCGGGACCAACCTTTCATAGGCAACACTTGTACTAAGATGAGCTTTGTCATTAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGCGCTGCAACATACAAGGTATTCTTGCATTTTTTCATTTCTTCTTCAAGATTGAACCATTATATTGAAGTTTCTTCGTTATCTGGTGTCAGTGCATGTATGATATATTCTACTTCTGTTATCAACATATTAGGTACTCTTGCATTACGGAGTATAAAAGGAATATCCTTTTGTGCTTCAACATATAAAATCAGAATCAAATAATCAATAAAATTTGGCCTCTTCTTCCTCCATGTATCTTAGGAACTATTTGTCTTGTCAGTATTCTTGTCATTTGAAATCCGATGTTTTTGTCAAAACCACATCAGGGTTACTTATTCATGGGAAATATGAGGTTTTGAGTGTTAGATTTGGATATTTTGGCAGGTTGTTTTCACATTGATTGTGTTTCGTCCGTTCGTGGGGGAGATAATTATTGGAAAAGTTAAAGAATCAGATGCAAATGGTTTGCGAAGTATGTTAATCTTTTTTTTTTTTTCAAACTTTCTTTGAGAATGTATATTTATCTATCACATATATTTTTTTTCTTTGATCTGAGTGTCACTTAGTCTAGCACTTTTAATCTTATTTCTGATGTCAAGATCGGTTTCCTATCAACTTTGTCAAATCTTTTGTGGGTTTATTTCAGTACCAATCTATCGTATAAAGGGGAGTTTGTACCATACTATTCTTATAAGAACTTTAATTTGTCAAACATTATATATATAAGAAACAAACTTTTTGTTAGGTTTTTAAGTCTATAGTTAATATACTTGAAAATTTGGTTTGGTTTATGTCAGCTTGGGTCTGTGGTGAAACTAATGGAATATTTAGATTTGATCAATTCTGTTTGAAGGCTTTAGAAATATTCCTACTTTCTCATTCTTGGTTTATGAACATAACATATGATAATTTGAGCATGGTGATGATGGAAATATACTAATTTTGCAGTATCACTTGGATTTTTCGAGGACATTTATGTTCCCATCCATCTTCTGCCCTCTCCATCTGAATTCAAGCCCGATCCAAAAAATGGGTAATTCCCCCTGTGCACCTCACAGCCACTGTATAAAAATATAAATGGTGCTTCTGTTAAATGGTAATCTTTGTATTGTTCAGTTATCTTAAGTATTATCGATGATTATTCGTTTGCGAGGATTGCAGTGGAAAACGCAGATGGGTATGGGACTATGATGGTCAACCATACGACATATATGAAACTGATGAGGTTTGTCAGTTATGATAGTGGTTTTTTTTTTTTCTTTTTTTAGTTTTAGGTTTAAATCCAGTGTTGCTAACTTTTATACTTATTTCATTTGGGTGCTTAAACTTTGAAATATTTCATTTCAATCCCTAAACTTTGCAAAAGACCTACTTTGTTTTCTTAGTCATTCAAACATAACTCAAATCTATTTGAAAACTTGATACTTTCTAAGAATTTAAAGAAAATAAGCACAAAAATGGAGGCAAATGTATGATGTATATTGTTGGAATTTTGGAGATAGTGCATATTCTTAGTTTTGGTTTTTGGAAATGGCAGATAAAATTTAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGCAATTCAAAATTCCCAATGGAGGAGCAACCCAAAGAGAGTACTAACGTAAAAGCATTTGCCCCCATGATTGTTACTGTATGTCACTCACTCACAACTTCTACCATTTGCTCTACTTATCTTAACTATATATGTGTCATTAGCCAAAGGGCGATTGATTTGTAGTAGGGATGTCAATTTTCTCCACGAAGACGAGTCCTACGAGAATCCATGCCTAACAGGACTTAGACTTTCCAATTCAATAGGGCGACAAGGACTGCTCGACTGTAGTCCCGTCATGTTGCTATCCCTAATTTGTAGCACAATATTATATCCATTGCATTACATAGCAACTACTCTGTTAATGGGATTTGGTTTTCTTCTGGTGTAGGCAACAATTGATTATGATGGATTGGGCCCTGTTTCGTGGTGGGATGGTTCGGGAGATGCCGATGCCGAGGCCGAGGCCGAGGTCAAAGAAGATTCCTAAGGTCAACATCCCATTTTGGTACTGATACAAATTGGTATTCATTCATTCATGATTCTGTACTATATGTCATTATCATTAGGCATAGGCAAGATAGTCACTAGTCAGTTATCTTATCTCAACTTCATATTGTAACCAAATACAAGTCTTTTCCACCTTTTTGAAGACTGTTGTTTATTCTTTAAACCTAACTTATTTACTCTAATCCCTAGTTTTAATATATCCATATTCA

mRNA sequence

GCCTCCAACAATGTATTTTGGTTGGAATTAGACTCGAAGAATATCCAAATGTTCTACCTTAGCCGAATTGAGCACACCTTACGTGTGCCTCCGAGCATGCTTCACCTACCTATCCTTGATGCTATTAAGGGCGAGCTAGAGAAACTATTCCTGGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGCGCTGCAACATACAAGGTTGTTTTCACATTGATTGTGTTTCGTCCGTTCGTGGGGGAGATAATTATTGGAAAAGTTAAAGAATCAGATGCAAATGGTTTGCGAATATCACTTGGATTTTTCGAGGACATTTATGTTCCCATCCATCTTCTGCCCTCTCCATCTGAATTCAAGCCCGATCCAAAAAATGGTGGAAAACGCAGATGGGTATGGGACTATGATGGTCAACCATACGACATATATGAAACTGATGAGATAAAATTTAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGCAATTCAAAATTCCCAATGGAGGAGCAACCCAAAGAGAGTACTAACGTAAAAGCATTTGCCCCCATGATTGTTACTGCAACAATTGATTATGATGGATTGGGCCCTGTTTCGTGGTGGGATGGTTCGGGAGATGCCGATGCCGAGGCCGAGGCCGAGGTCAAAGAAGATTCCTAA

Coding sequence (CDS)

GCCTCCAACAATGTATTTTGGTTGGAATTAGACTCGAAGAATATCCAAATGTTCTACCTTAGCCGAATTGAGCACACCTTACGTGTGCCTCCGAGCATGCTTCACCTACCTATCCTTGATGCTATTAAGGGCGAGCTAGAGAAACTATTCCTGGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGCGCTGCAACATACAAGGTTGTTTTCACATTGATTGTGTTTCGTCCGTTCGTGGGGGAGATAATTATTGGAAAAGTTAAAGAATCAGATGCAAATGGTTTGCGAATATCACTTGGATTTTTCGAGGACATTTATGTTCCCATCCATCTTCTGCCCTCTCCATCTGAATTCAAGCCCGATCCAAAAAATGGTGGAAAACGCAGATGGGTATGGGACTATGATGGTCAACCATACGACATATATGAAACTGATGAGATAAAATTTAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGCAATTCAAAATTCCCAATGGAGGAGCAACCCAAAGAGAGTACTAACGTAAAAGCATTTGCCCCCATGATTGTTACTGCAACAATTGATTATGATGGATTGGGCCCTGTTTCGTGGTGGGATGGTTCGGGAGATGCCGATGCCGAGGCCGAGGCCGAGGTCAAAGAAGATTCCTAA

Protein sequence

ASNNVFWLELDSKNIQMFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAEAEAEVKEDS

Homology

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BLAST of Spg025757 vs. NCBI nr
Match: XP_022954042.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata] >XP_022954043.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata])

HSP 1 Score: 436.4 bits (1121), Expect = 1.6e-118
Identity = 212/227 (93.39%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           PSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQP 196
           KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQP
Sbjct: 121 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQP 180

Query: 197 KESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAEAEAEVKEDS 243
           KE+ NVK FAPM+VTATIDYDGLGPVSWWDGSGDADA+AEAE +EDS
Sbjct: 181 KENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS 227

[Close]

BLAST of Spg025757 vs. NCBI nr
Match: XP_023547503.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_023547504.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 433.0 bits (1112), Expect = 1.8e-117
Identity = 213/227 (93.83%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           PSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQP 196
           KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQP
Sbjct: 121 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQP 180

Query: 197 KESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAEAEAEVKEDS 243
           KE+ NVK FAPM+VTATIDYDGLGPVSWWDGSGDADA+AEAE  EDS
Sbjct: 181 KENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAE--EDS 225

[Close]

BLAST of Spg025757 vs. NCBI nr
Match: XP_022991804.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima] >XP_022991805.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima])

HSP 1 Score: 431.0 bits (1107), Expect = 6.7e-117
Identity = 212/229 (92.58%), Postives = 218/229 (95.20%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           PSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQP 196
           KPDPKN GKRRWVWDYDGQPYDIYETDEIKFRIHSI+YP IPV +QP ESNSKF MEEQP
Sbjct: 121 KPDPKNSGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPTIPVDQQPNESNSKFQMEEQP 180

Query: 197 KESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDAD--AEAEAEVKEDS 243
           KE+ NVK FAPM+VTATIDYDGLGPVSWWDGSGDAD  AEAEAE +EDS
Sbjct: 181 KENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAEAEAEAEAEEDS 229

[Close]

BLAST of Spg025757 vs. NCBI nr
Match: KAG7014295.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 212/227 (93.39%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           PSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQP 196
           KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQP
Sbjct: 121 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQP 180

Query: 197 KESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAEAEAEVKEDS 243
           KE+ NVK FAPM+VTATIDYDGLGPVSWWDGSGDADAE EAE  EDS
Sbjct: 181 KENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAEGEAE--EDS 225

[Close]

BLAST of Spg025757 vs. NCBI nr
Match: XP_022152296.1 (DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152304.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152310.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152318.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152325.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152332.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia])

HSP 1 Score: 427.2 bits (1097), Expect = 9.6e-116
Identity = 212/228 (92.98%), Postives = 216/228 (94.74%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           PSDGAATYKVVFTLIVFRP+VGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLP+PSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPTPSEF 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEE-QP 196
           KPD KNGGKRRWVWDYDGQPYDIYETDEIKFRIH+IEYPAIPVEQPKESN KF  EE QP
Sbjct: 121 KPDSKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNEKFLTEEQQP 180

Query: 197 KEST-NVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAEAEAEVKEDS 243
           KEST NVKAFAPMIVT TIDYDGLGPVSWWDGSGD D EAE   +EDS
Sbjct: 181 KESTSNVKAFAPMIVTGTIDYDGLGPVSWWDGSGDVDPEAEVGAEEDS 228

[Close]

BLAST of Spg025757 vs. ExPASy Swiss-Prot
Match: Q9Y535 (DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-32
Identity = 76/212 (35.85%), Postives = 119/212 (56.13%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           P DGA+  KV F  +VF PF+ EI+IGK+K     G+ +SLGFF+DI +P   L  P++F
Sbjct: 61  PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 137 KPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIEYPAIPVEQPKESNSKFPME 196
                +  ++ WVW+Y+ +   +D+Y    +EI+FR+    +       P  +++    E
Sbjct: 121 -----DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 180

Query: 197 EQPKESTNVKAFAPMIVTATIDYDGLGPVSWW 225
           E PK+       AP  +  +I   GLG +SWW
Sbjct: 181 ELPKKE------APYTLVGSISEPGLGLLSWW 201

[Close]

BLAST of Spg025757 vs. ExPASy Swiss-Prot
Match: Q9D2C6 (DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h PE=1 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-32
Identity = 76/212 (35.85%), Postives = 118/212 (55.66%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           P DGA+  KV F  +VF PF+ EI+IGK+K     G+ +SLGFF+DI +P   L  P++F
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 137 KPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIEYPAIPVEQPKESNSKFPME 196
                +  ++ WVW+Y+ +   +D+Y    +EI+FR+    +       P  + +    E
Sbjct: 121 -----DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 180

Query: 197 EQPKESTNVKAFAPMIVTATIDYDGLGPVSWW 225
           E PK+       AP  +  +I   GLG +SWW
Sbjct: 181 ELPKKE------APYTLVGSISEPGLGLLSWW 201

[Close]

BLAST of Spg025757 vs. ExPASy Swiss-Prot
Match: Q2T9X1 (DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.1e-32
Identity = 75/215 (34.88%), Postives = 119/215 (55.35%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MF L  +  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           P DGA+  KV F  +VF PF+ EI+IGK+K     G+ +SLGFF+DI +P   L  P++F
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 137 KPDPKNGGKRRWVWDYDGQ--PYDIYET--DEIKFRIHSIEYPAIPVEQPKESNSKFPME 196
                +  ++ WVW+Y+ +   +D+Y    +E++FR+    +       P  + +    E
Sbjct: 121 -----DEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSE 180

Query: 197 EQPKESTNVKAFAPMIVTATIDYDGLGPVSWWDGS 228
           E PK+       AP  +  +I   GLG +SWW  S
Sbjct: 181 ELPKKE------APYTLMGSISEPGLGLLSWWTSS 204

[Close]

BLAST of Spg025757 vs. ExPASy Swiss-Prot
Match: O94285 (DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc25 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30
Identity = 74/216 (34.26%), Postives = 119/216 (55.09%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MF LSR    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I 
Sbjct: 1   MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
             DG++   VVF LI+FRPF GE+++GK+K     G+R+++ FF+DI++P  +L  P  F
Sbjct: 61  YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF 120

Query: 137 KPDPKNGGKRRWVWDYDGQP--------YDIYETDEIKFRIHSIEYPAIPVEQPKESNSK 196
           +PD     +R WVW  +G+         +DI E  EI+F+I S ++  I  ++ K + + 
Sbjct: 121 RPD-----ERAWVWKIEGEDGSEGTELYFDIDE--EIRFQIESEDFVDISPKRNKNATAI 180

Query: 197 FPMEEQPKESTNVKAFAPMIVTATIDYDGLGPVSWW 225
              E        +++ +P  + A+   DGLG  +WW
Sbjct: 181 TGTEA-------LESVSPYTLIASCSRDGLGIPAWW 202

[Close]

BLAST of Spg025757 vs. ExPASy Swiss-Prot
Match: P35718 (DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC25 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.1e-29
Identity = 69/217 (31.80%), Postives = 119/217 (54.84%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MF LS+I   +R+PP   H   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + 
Sbjct: 1   MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS-LGFFEDIYVPIHLLPSPSE 136
           P DG++   V F  +VF+PF+GEI+ G + +  A G+++S LG F+DI++P ++L     
Sbjct: 61  PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120

Query: 137 FKPDPKNGGKRRWVWDYDGQPYDIYETDE-IKFRIHSIEY----PAIPVEQPKESNSKFP 196
           + P+     +  W+W  D +    ++ +E I+FRI    +    P  P E+  E  ++  
Sbjct: 121 YTPE-----ESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 180

Query: 197 MEEQPKESTNVKAFAP--MIVTATIDYDGLGPVSWWD 226
            E + K     +   P    +  +   DG+G VSWW+
Sbjct: 181 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212

[Close]

BLAST of Spg025757 vs. ExPASy TrEMBL
Match: A0A6J1GPX5 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LOC111456422 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.7e-119
Identity = 212/227 (93.39%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           PSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQP 196
           KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQP
Sbjct: 121 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQP 180

Query: 197 KESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAEAEAEVKEDS 243
           KE+ NVK FAPM+VTATIDYDGLGPVSWWDGSGDADA+AEAE +EDS
Sbjct: 181 KENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS 227

[Close]

BLAST of Spg025757 vs. ExPASy TrEMBL
Match: A0A6J1JVU8 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita maxima OX=3661 GN=LOC111488343 PE=3 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.2e-117
Identity = 212/229 (92.58%), Postives = 218/229 (95.20%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           PSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQP 196
           KPDPKN GKRRWVWDYDGQPYDIYETDEIKFRIHSI+YP IPV +QP ESNSKF MEEQP
Sbjct: 121 KPDPKNSGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPTIPVDQQPNESNSKFQMEEQP 180

Query: 197 KESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDAD--AEAEAEVKEDS 243
           KE+ NVK FAPM+VTATIDYDGLGPVSWWDGSGDAD  AEAEAE +EDS
Sbjct: 181 KENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAEAEAEAEAEEDS 229

[Close]

BLAST of Spg025757 vs. ExPASy TrEMBL
Match: A0A6J1DFX3 (DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020040 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.7e-116
Identity = 212/228 (92.98%), Postives = 216/228 (94.74%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           PSDGAATYKVVFTLIVFRP+VGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLP+PSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPTPSEF 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEE-QP 196
           KPD KNGGKRRWVWDYDGQPYDIYETDEIKFRIH+IEYPAIPVEQPKESN KF  EE QP
Sbjct: 121 KPDSKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNEKFLTEEQQP 180

Query: 197 KEST-NVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAEAEAEVKEDS 243
           KEST NVKAFAPMIVT TIDYDGLGPVSWWDGSGD D EAE   +EDS
Sbjct: 181 KESTSNVKAFAPMIVTGTIDYDGLGPVSWWDGSGDVDPEAEVGAEEDS 228

[Close]

BLAST of Spg025757 vs. ExPASy TrEMBL
Match: A0A0A0K846 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413390 PE=3 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 3.7e-105
Identity = 187/226 (82.74%), Postives = 209/226 (92.48%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           PSDGAATYKVVFTLIVFRPF GE+IIGKV+ES+ NGLRISLGFFEDIYVP+ L+PS SEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPK 196
            PD  NGG+ RWVW Y+  P+DIYE+DEIKF++HSIEYPAI VEQPKESNSKFPMEE+PK
Sbjct: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 197 ESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAEAEAEVKEDS 243
           ES NVK FAPM++TA++D DGLGPVSWWDGSG+A+AE E EV+EDS
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 226

[Close]

BLAST of Spg025757 vs. ExPASy TrEMBL
Match: A0A5A7UWI5 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00020 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 8.3e-105
Identity = 189/226 (83.63%), Postives = 209/226 (92.48%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           PSDGAATYKVVFTLIVFRPF GE+IIGKV+ES+ NGLRISLGFFEDIYVP+ L+PS SEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPK 196
            PD  NGG+RRWVW Y+  P+DIYE+DEIKF+IHSIEYPAI VEQPKESNSKFPMEE+PK
Sbjct: 121 TPDENNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 197 ESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAEAEAEVKEDS 243
           ES NVK FAPM++TA++D DGLGPVSWWDGSG  +AEAE EV+EDS
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSG--EAEAEDEVEEDS 224

[Close]

BLAST of Spg025757 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 253.1 bits (645), Expect = 2.3e-67
Identity = 121/220 (55.00%), Postives = 158/220 (71.82%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLS +EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           P DGAATYKV   ++VFRPFVGE+I  K KESDANGLR++LGFF+DIYVP  L+P P+  
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIEYPAIPVEQPKESNSKFPMEE 196
           +PDP N  +  WVW+Y G+P + Y  D   +IKFR+ SI YP++P E+ +++        
Sbjct: 121 EPDPYNRKQMIWVWEY-GEPKEDYIVDDACQIKFRVESISYPSVPTERAEDA-------- 180

Query: 197 QPKESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAE 234
                   K FAPM+VT  +D DGLGPVSWWD     D E
Sbjct: 181 --------KPFAPMVVTGNMDDDGLGPVSWWDSYEQVDQE 203

[Close]

BLAST of Spg025757 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 226.1 bits (575), Expect = 3.0e-59
Identity = 108/199 (54.27%), Postives = 145/199 (72.86%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MFYLS +EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 136
           P DGAATYKV   ++VFRPFVGE+I  K KESDANGLR++LGFF+DIYVP  L+P P+  
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120

Query: 137 KPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIEYPAIPVEQPKESNSKFPMEE 196
           +PDP N  +  WVW+Y G+P + Y  D   +IKFR+ SI YP++P E+ +++        
Sbjct: 121 EPDPYNRKQMIWVWEY-GEPKEDYIVDDACQIKFRVESISYPSVPTERAEDA-------- 180

Query: 197 QPKESTNVKAFAPMIVTAT 213
                   K FAPM+VT +
Sbjct: 181 --------KPFAPMVVTVS 182

[Close]

BLAST of Spg025757 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-05
Identity = 33/126 (26.19%), Postives = 56/126 (44.44%), Query Frame = 0


Query: 17  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 76
           MF+   +E  +++ P      + + +  +L K          G  +++  I ++  G I 
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 77  PSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFED-----IYVPIHLLP 136
              G  T+ V +  +VFRPF GEI+   V       L   +GFF +     I+V  HL+P
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVT------LVNKMGFFAEAGPVQIFVSKHLIP 120

Query: 137 SPSEFK 138
              EF+
Sbjct: 121 DDMEFQ 120

The following BLAST results are available for this feature:

BLAST of Spg025757 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954042.1	1.6e-118	93.39	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata] >XP_022954043....	[more]
XP_023547503.1	1.8e-117	93.83	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022991804.1	6.7e-117	92.58	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima] >XP_022991805.1 ...	[more]
KAG7014295.1	1.1e-116	93.39	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argy...	[more]
XP_022152296.1	9.6e-116	92.98	DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >X...	[more]

BLAST of Spg025757 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y535	1.1e-32	35.85	DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H P...	[more]
Q9D2C6	1.4e-32	35.85	DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h ...	[more]
Q2T9X1	3.1e-32	34.88	DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=...	[more]
O94285	1.3e-30	34.26	DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strai...	[more]
P35718	7.1e-29	31.80	DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of Spg025757 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPX5	7.7e-119	93.39	DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JVU8	3.2e-117	92.58	DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1DFX3	4.7e-116	92.98	DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Momordica charantia O...	[more]
A0A0A0K846	3.7e-105	82.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413390 PE=3 SV=1	[more]
A0A5A7UWI5	8.3e-105	83.63	DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. mak...	[more]

BLAST of Spg025757 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06790.1	2.3e-67	55.00	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.2	3.0e-59	54.27	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT5G59180.1	2.5e-05	26.19	DNA-directed RNA polymerase II	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013238	RNA polymerase III, subunit Rpc25	PFAM	PF08292	RNA_pol_Rbc25	coord: 99..224 e-value: 1.0E-25 score: 90.4
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 24..80 e-value: 6.9E-11 score: 42.2
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 17..96 e-value: 1.1E-25 score: 91.8
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 17..94
None	No IPR available	GENE3D	2.40.50.140		coord: 97..225 e-value: 2.7E-34 score: 120.4
None	No IPR available	PANTHER	PTHR12709:SF9	BNAC08G44960D PROTEIN	coord: 17..233
None	No IPR available	CDD	cd04330	RNAP_III_Rpc25_N	coord: 18..97 e-value: 1.79788E-37 score: 124.243
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 17..233
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 95..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg025757.1	Spg025757.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity