Spg025547 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg025547
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptioncytochrome b-c1 complex subunit 8-like
Locationscaffold13: 29309510 .. 29311266 (+)
RNA-Seq ExpressionSpg025547
SyntenySpg025547
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAATCCAACGGTGAAGATTAGTATTGAAATACGCAGTTTCTCGAAGAGGAGCCTGGCTTAGATTTGGGAACAAGAACCAACCCCTCTCGATCGAGAAGCCGCCCTCTTCATAAGACTCGCTTGAGGCTTTCGATAACTGCGTTTGAAGTTGAAGATTTGGGATTGCGATGGGGAAGCAACCAGTCCGGATGAAGGCTGTGGTCTACGCTTTATCGCCGTTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTGACCGGCAAGATCCACCATAAGATCTCCGAGAACTGGATCAGTGCCGCTCTTCTAATTACTCCCGTCCTCGGCACCTACACGTAATTTTTCCATCTCCTCGTTCCATTCCATCTTTTTCTTATTTTTGAAATTTCGAATTTAGGGTTTGCTTCTTGGTGAATGGTTTCCTCTTTTCATATTTCAATCTGCTATCAATTTTTTTTTTTTAAATTAAGTCTTCATGTGTTTCTCGATGAGCTTGGTAGCTTCGTATTTTCATAACACTTGGTCGGATTTAATTTAGATGAGATGTCTCCTGATCGGATTCAAAGTGGGAGTGCACAATTCCTCCTACATAGGTTTCTTGTAATGATTTGGTATTTTCTGGACGTAGCCTTAAGATCTAAAGTGTTTAATATTTTCCTCGAAGTTAATCATGTTTTTAATATTCATGACTCTGAAATTTTCTTCTGGAACTGAGCAAGAACAGTTGATATATTGCATCTTATTGCGCATTCAGGTTTGATTGATTGTTTTGTTTGTTGGAATGGAATAGAAAGCTCGGTGATTTTTCTTCTTTTTTGGGGGGCGAATGTTCCCGTGATGGTGTTATTGTCCTTAATTGCAAGTGTTCATTTCTGTTTTTGATTATATATTATCAGTTAGGCGTTGCCTTGCTTGACTGAAAGTGATCCCAAACCATGTCAATCAGATTTTCCACGACTCTTCCTACATCTGTGTGGTGAATCCTAGTTTTTAATAATCTCCAATTACTTTGGTCTATTTTTAATTCATTCTATTTTGTCATTGAAGAGAAGTATTAGTTCTGTTGTGCATAGGGTTGACGAAACGTTGTTTTTAAGAATTCTTTAGCACTTGATGTGATCGTTTGATGGGCATTTTTTTTTTTTTTGTTATAATTAAAATTTCCCCTTTCAATTGAATTTTGCATCTTGCATCAACATATAAAAGATGTATCATGCCAGTGTTGGCGGTAGACAAATCTAATCGATGCGCGTCACTTTTGAACTTCGATTGAAGTATCGTTTGCATATACATACATGTATAAGATAAATGACTTAGTTGATTGATTGGTAGAAAATGTGAAACGATGGTTGATGAGCATTTAGATATATCTTTCACTTGTTTTTCTTTGATTTAATGTCGACCTCCCACGCATTCAAGGCATCATGTCTGCAAATGGATGCAGGTATGCACAGCAGTACAAGGAGAATGAAAAGCTGTCTCACAGGTACTGAAGGCGCATGGTTCCTGGATTTTCCATCTACCTTGAAGAACTTTTGAACTTCTGACTTTTTCGTTATGCAAATGAAGTTCTGGTTTCTTAGACTATGAGGATGTGCTTTTATTTTGAGGAACATTTTCTCGCTTGTTTGTTGGAATAAATTTACAACATTTTTTGTTTTTGATCATGTGAAGACTGTTATATAAAGATCAGTGGAACATGCACTGGAATGGCGTTAACTGATGAACAGCCAAGCTTTAGACTCCGATTAG

mRNA sequence

ATGGGGAAGCAACCAGTCCGGATGAAGGCTGTGGTCTACGCTTTATCGCCGTTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTGACCGGCAAGATCCACCATAAGATCTCCGAGAACTGGATCAGTGCCGCTCTTCTAATTACTCCCGTCCTCGGCACCTACACGTATGCACAGCAGTACAAGGAGAATGAAAAGCTGTCTCACAGCCAAGCTTTAGACTCCGATTAG

Coding sequence (CDS)

ATGGGGAAGCAACCAGTCCGGATGAAGGCTGTGGTCTACGCTTTATCGCCGTTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTGACCGGCAAGATCCACCATAAGATCTCCGAGAACTGGATCAGTGCCGCTCTTCTAATTACTCCCGTCCTCGGCACCTACACGTATGCACAGCAGTACAAGGAGAATGAAAAGCTGTCTCACAGCCAAGCTTTAGACTCCGATTAG

Protein sequence

MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQQYKENEKLSHSQALDSD
Homology
BLAST of Spg025547 vs. NCBI nr
Match: XP_038886592.1 (cytochrome b-c1 complex subunit 8-like [Benincasa hispida])

HSP 1 Score: 144.4 bits (363), Expect = 4.0e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQKIMTGLWNDL GKIHHKISENWISAALLITPV+GTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDLPGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSH 71
          QYKENEKLSH
Sbjct: 61 QYKENEKLSH 70

BLAST of Spg025547 vs. NCBI nr
Match: XP_022131282.1 (cytochrome b-c1 complex subunit 8-like [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISA LL+TPV+GTYTYAQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYTYAQ 60

Query: 61 QYKENEKLSH 71
          QYKE EKL+H
Sbjct: 61 QYKEKEKLAH 70

BLAST of Spg025547 vs. NCBI nr
Match: XP_022951208.1 (cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_023002778.1 cytochrome b-c1 complex subunit 8-like [Cucurbita maxima] >XP_023537368.1 cytochrome b-c1 complex subunit 8-like [Cucurbita pepo subsp. pepo] >KAG6585163.1 Cytochrome b-c1 complex subunit 8-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020083.1 hypothetical protein SDJN02_16765 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISAALLITPV+GTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSH 71
          Q+KENEKLSH
Sbjct: 61 QFKENEKLSH 70

BLAST of Spg025547 vs. NCBI nr
Match: XP_022961649.1 (cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_022997627.1 cytochrome b-c1 complex subunit 8-like [Cucurbita maxima] >XP_023545652.1 cytochrome b-c1 complex subunit 8-like [Cucurbita pepo subsp. pepo] >KAG6598219.1 Cytochrome b-c1 complex subunit 8-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029201.1 hypothetical protein SDJN02_07538, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LLITPV+GTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSH 71
          QYKENEKLSH
Sbjct: 61 QYKENEKLSH 70

BLAST of Spg025547 vs. NCBI nr
Match: XP_004142978.1 (cytochrome b-c1 complex subunit 8 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.2e-29
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPVRMKAVVYALSPFQQKIM+GLWNDL+GKIHHKISENWISAALLITPV+G+YTY Q
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QYKENEKLSH 71
          QYKE EKLSH
Sbjct: 61 QYKEKEKLSH 70

BLAST of Spg025547 vs. ExPASy Swiss-Prot
Match: Q9SG91 (Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-1 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-28
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPV++KAVVYALSPFQQKIMTGLW DL  KIHHK+SENWISA LL+TPV+GTY YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 QYKENEKLSH 71
           +KE EKL H
Sbjct: 61 YFKEQEKLEH 70

BLAST of Spg025547 vs. ExPASy Swiss-Prot
Match: Q9FLB7 (Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-2 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.6e-27
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPV++KAVVYALSPFQQKIMTGLW DL  KIHHK+SENWIS  LL+ PV+GTY+YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query: 61 QYKENEKLSH 71
           +KE EKL H
Sbjct: 61 YFKEQEKLEH 70

BLAST of Spg025547 vs. ExPASy Swiss-Prot
Match: P46269 (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 6.8e-26
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPV++KAVVYA+SPFQQKIM GLW DL GKIHHK+SENWISA LL+ P++GTY+Y Q
Sbjct: 1  MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60

Query: 61 QYKENEKLSH 71
           + E EKL H
Sbjct: 61 HFLEKEKLEH 70

BLAST of Spg025547 vs. ExPASy TrEMBL
Match: A0A6J1K5M6 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111492502 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LLITPV+GTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSH 71
          QYKENEKLSH
Sbjct: 61 QYKENEKLSH 70

BLAST of Spg025547 vs. ExPASy TrEMBL
Match: A0A6J1KUK4 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111496537 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISAALLITPV+GTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSH 71
          Q+KENEKLSH
Sbjct: 61 QFKENEKLSH 70

BLAST of Spg025547 vs. ExPASy TrEMBL
Match: A0A6J1BQK7 (cytochrome b-c1 complex subunit 8-like OS=Momordica charantia OX=3673 GN=LOC111004551 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISA LL+TPV+GTYTYAQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYTYAQ 60

Query: 61 QYKENEKLSH 71
          QYKE EKL+H
Sbjct: 61 QYKEKEKLAH 70

BLAST of Spg025547 vs. ExPASy TrEMBL
Match: A0A6J1HEN4 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC111462357 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LLITPV+GTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSH 71
          QYKENEKLSH
Sbjct: 61 QYKENEKLSH 70

BLAST of Spg025547 vs. ExPASy TrEMBL
Match: A0A6J1GH36 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC111454117 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISAALLITPV+GTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QYKENEKLSH 71
          Q+KENEKLSH
Sbjct: 61 QFKENEKLSH 70

BLAST of Spg025547 vs. TAIR 10
Match: AT3G10860.1 (Cytochrome b-c1 complex, subunit 8 protein )

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-29
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPV++KAVVYALSPFQQKIMTGLW DL  KIHHK+SENWISA LL+TPV+GTY YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 QYKENEKLSH 71
           +KE EKL H
Sbjct: 61 YFKEQEKLEH 70

BLAST of Spg025547 vs. TAIR 10
Match: AT5G05370.1 (Cytochrome b-c1 complex, subunit 8 protein )

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-28
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAALLITPVLGTYTYAQ 60
          MGKQPV++KAVVYALSPFQQKIMTGLW DL  KIHHK+SENWIS  LL+ PV+GTY+YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query: 61 QYKENEKLSH 71
           +KE EKL H
Sbjct: 61 YFKEQEKLEH 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038886592.14.0e-3195.71cytochrome b-c1 complex subunit 8-like [Benincasa hispida][more]
XP_022131282.12.6e-3092.86cytochrome b-c1 complex subunit 8-like [Momordica charantia][more]
XP_022951208.12.6e-3092.86cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_023002778.1 cyto... [more]
XP_022961649.12.6e-3092.86cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_022997627.1 cyto... [more]
XP_004142978.12.2e-2991.43cytochrome b-c1 complex subunit 8 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q9SG915.6e-2880.00Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
Q9FLB73.6e-2777.14Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
P462696.8e-2672.86Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1K5M61.2e-3092.86cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC1114925... [more]
A0A6J1KUK41.2e-3092.86cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC1114965... [more]
A0A6J1BQK71.2e-3092.86cytochrome b-c1 complex subunit 8-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A6J1HEN41.2e-3092.86cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
A0A6J1GH361.2e-3092.86cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
Match NameE-valueIdentityDescription
AT3G10860.14.0e-2980.00Cytochrome b-c1 complex, subunit 8 protein [more]
AT5G05370.12.6e-2877.14Cytochrome b-c1 complex, subunit 8 protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyGENE3D1.20.5.210coord: 2..76
e-value: 1.9E-9
score: 39.5
IPR036642Cytochrome b-c1 complex subunit 8 superfamilySUPERFAMILY81508Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 10..68
IPR020101Cytochrome b-c1 complex subunit 8, plantsPFAMPF10890Cyt_b-c1_8coord: 1..70
e-value: 5.2E-35
score: 119.7
IPR020101Cytochrome b-c1 complex subunit 8, plantsPANTHERPTHR34559CYTOCHROME B-C1 COMPLEX SUBUNIT 8coord: 1..72
NoneNo IPR availablePANTHERPTHR34559:SF3CYTOCHROME B-C1 COMPLEX, SUBUNIT 8coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg025547.1Spg025547.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component GO:0005750 mitochondrial respiratory chain complex III
cellular_component GO:0070469 respirasome