Spg025477 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGATGCAGATGGCACCGTCTACTTCGAAAGCCCCTAAACATATCTGGACACCAATGGAAGATGAAGTTTTGGTCCAGTGTCTGTTACATTTGGTTCAAGCAGGTGGATGGCGGGCTGACAATGGGACCTTTAGATCGGGGTACTTGCAACAAGTACAGAAGTTGATGAAAGAGAAATTGCCAGGATGCGACATACAAGTAACGCCGAACTTGGAGTCTAGAGTGAGGATCCTAAAAAGGCAATACGGTGCCCTCGTCGAAATGATGGGTCCCACTTGCAGTGGGTTTGGCTGGAATGATGAGCGAAAGTGCATTGAGGCAGAGAAATCGGTCTTCGATGATTGGGTTAGGGTAACAATTCAAACTTAATCCATGTACAGTTCATGAATAAAATGTTATACGATCATGTATGTTAATTGTGTTAGCATGTTGAATACAGGGACACCCAGCTGCTCGTGGTCTGAGGAACAAGCCATTCCCCTACTTCGATGACCTAGCAATTGTTTTCGGGAAGGATAGGGCCAATGGAGAAGGTGCTTCGACTCCGAACGAAATGGCCACTGACTTGGATGATGACGTGAACACAGATGTTGAAGATTGTTATGTCCCTTCCCCTCCTATAGTTAAACCTGTGGTAGGTGAAGAATTTTATATCACCCGTTCGAGCAGGATTGACACGCCAGGATCATCACGGGGAAGTAAGAGGAGGCGCACAGTACCAACAGACGCTGTCGATACATTTCGCACAAAGATGCGTTATGTGTCCACGCAAATCGAGAAGATCGCACTCTGGCCTCAACATAAGGATGAAATAGAGTCAGCTCGACGTAAACAATTGTATGGGGAACTACAGTCTATCCCGGGAATGGACATGGACGATTGTTTGCTTGTGGCCGAGACTCTGTTGGCTGATGACAAGAAATTTCGCTCATTCCTCGACTACCCTACTGAATGGAAGTATAAGTGCTGCATGCGTATCTTGGGAAGACAGCCATGA ATGTTGATGCAGATGGCACCGTCTACTTCGAAAGCCCCTAAACATATCTGGACACCAATGGAAGATGAAGTTTTGGTCCAGTGTCTGTTACATTTGGTTCAAGCAGGTGGATGGCGGGCTGACAATGGGACCTTTAGATCGGGGTACTTGCAACAAGTACAGAAGTTGATGAAAGAGAAATTGCCAGGATGCGACATACAAGTAACGCCGAACTTGGAGTCTAGAGTGAGGATCCTAAAAAGGCAATACGGTGCCCTCGTCGAAATGATGGGTCCCACTTGCAGTGGGTTTGGCTGGAATGATGAGCGAAAGTGCATTGAGGCAGAGAAATCGGTCTTCGATGATTGGGTTAGGGGACACCCAGCTGCTCGTGGTCTGAGGAACAAGCCATTCCCCTACTTCGATGACCTAGCAATTGTTTTCGGGAAGGATAGGGCCAATGGAGAAGGTGCTTCGACTCCGAACGAAATGGCCACTGACTTGGATGATGACGTGAACACAGATGTTGAAGATTGTTATGTCCCTTCCCCTCCTATAGTTAAACCTGTGGTAGGTGAAGAATTTTATATCACCCGTTCGAGCAGGATTGACACGCCAGGATCATCACGGGGAAGTAAGAGGAGGCGCACAGTACCAACAGACGCTGTCGATACATTTCGCACAAAGATGCGTTATGTGTCCACGCAAATCGAGAAGATCGCACTCTGGCCTCAACATAAGGATGAAATAGAGTCAGCTCGACGTAAACAATTGTATGGGGAACTACAGTCTATCCCGGGAATGGACATGGACGATTGTTTGCTTGTGGCCGAGACTCTGTTGGCTGATGACAAGAAATTTCGCTCATTCCTCGACTACCCTACTGAATGGAAGTATAAGTGCTGCATGCGTATCTTGGGAAGACAGCCATGA ATGTTGATGCAGATGGCACCGTCTACTTCGAAAGCCCCTAAACATATCTGGACACCAATGGAAGATGAAGTTTTGGTCCAGTGTCTGTTACATTTGGTTCAAGCAGGTGGATGGCGGGCTGACAATGGGACCTTTAGATCGGGGTACTTGCAACAAGTACAGAAGTTGATGAAAGAGAAATTGCCAGGATGCGACATACAAGTAACGCCGAACTTGGAGTCTAGAGTGAGGATCCTAAAAAGGCAATACGGTGCCCTCGTCGAAATGATGGGTCCCACTTGCAGTGGGTTTGGCTGGAATGATGAGCGAAAGTGCATTGAGGCAGAGAAATCGGTCTTCGATGATTGGGTTAGGGGACACCCAGCTGCTCGTGGTCTGAGGAACAAGCCATTCCCCTACTTCGATGACCTAGCAATTGTTTTCGGGAAGGATAGGGCCAATGGAGAAGGTGCTTCGACTCCGAACGAAATGGCCACTGACTTGGATGATGACGTGAACACAGATGTTGAAGATTGTTATGTCCCTTCCCCTCCTATAGTTAAACCTGTGGTAGGTGAAGAATTTTATATCACCCGTTCGAGCAGGATTGACACGCCAGGATCATCACGGGGAAGTAAGAGGAGGCGCACAGTACCAACAGACGCTGTCGATACATTTCGCACAAAGATGCGTTATGTGTCCACGCAAATCGAGAAGATCGCACTCTGGCCTCAACATAAGGATGAAATAGAGTCAGCTCGACGTAAACAATTGTATGGGGAACTACAGTCTATCCCGGGAATGGACATGGACGATTGTTTGCTTGTGGCCGAGACTCTGTTGGCTGATGACAAGAAATTTCGCTCATTCCTCGACTACCCTACTGAATGGAAGTATAAGTGCTGCATGCGTATCTTGGGAAGACAGCCATGA MLMQMAPSTSKAPKHIWTPMEDEVLVQCLLHLVQAGGWRADNGTFRSGYLQQVQKLMKEKLPGCDIQVTPNLESRVRILKRQYGALVEMMGPTCSGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVFGKDRANGEGASTPNEMATDLDDDVNTDVEDCYVPSPPIVKPVVGEEFYITRSSRIDTPGSSRGSKRRRTVPTDAVDTFRTKMRYVSTQIEKIALWPQHKDEIESARRKQLYGELQSIPGMDMDDCLLVAETLLADDKKFRSFLDYPTEWKYKCCMRILGRQP Homology
BLAST of Spg025477 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 315.8 bits (808), Expect = 3.9e-82 Identity = 163/299 (54.52%), Postives = 202/299 (67.56%), Query Frame = 0
BLAST of Spg025477 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]) HSP 1 Score: 298.9 bits (764), Expect = 5.0e-77 Identity = 150/290 (51.72%), Postives = 189/290 (65.17%), Query Frame = 0
BLAST of Spg025477 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 272.3 bits (695), Expect = 5.0e-69 Identity = 135/237 (56.96%), Postives = 169/237 (71.31%), Query Frame = 0
BLAST of Spg025477 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]) HSP 1 Score: 272.3 bits (695), Expect = 5.0e-69 Identity = 135/237 (56.96%), Postives = 169/237 (71.31%), Query Frame = 0
BLAST of Spg025477 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]) HSP 1 Score: 256.9 bits (655), Expect = 2.2e-64 Identity = 129/222 (58.11%), Postives = 155/222 (69.82%), Query Frame = 0
BLAST of Spg025477 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1) HSP 1 Score: 315.8 bits (808), Expect = 1.9e-82 Identity = 163/299 (54.52%), Postives = 202/299 (67.56%), Query Frame = 0
BLAST of Spg025477 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 2.4e-77 Identity = 150/290 (51.72%), Postives = 189/290 (65.17%), Query Frame = 0
BLAST of Spg025477 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 2.4e-69 Identity = 135/237 (56.96%), Postives = 169/237 (71.31%), Query Frame = 0
BLAST of Spg025477 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 2.4e-69 Identity = 135/237 (56.96%), Postives = 169/237 (71.31%), Query Frame = 0
BLAST of Spg025477 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 1.0e-64 Identity = 129/222 (58.11%), Postives = 155/222 (69.82%), Query Frame = 0
BLAST of Spg025477 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 77.8 bits (190), Expect = 1.7e-14 Identity = 64/287 (22.30%), Postives = 116/287 (40.42%), Query Frame = 0
BLAST of Spg025477 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). ) HSP 1 Score: 77.8 bits (190), Expect = 1.7e-14 Identity = 64/287 (22.30%), Postives = 116/287 (40.42%), Query Frame = 0
BLAST of Spg025477 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 77.8 bits (190), Expect = 1.7e-14 Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 0
BLAST of Spg025477 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 1.7e-06 Identity = 30/105 (28.57%), Postives = 51/105 (48.57%), Query Frame = 0
BLAST of Spg025477 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 1.7e-06 Identity = 30/105 (28.57%), Postives = 51/105 (48.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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