Spg025458 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg025458
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNucleic acid-binding, OB-fold-like protein
Locationscaffold13: 28961344 .. 28963344 (-)
RNA-Seq ExpressionSpg025458
SyntenySpg025458
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACACTTCTGTGGTGTAGATGAAATTTATCGTGAGTCTAACCCTTATTGTTAAAATATATGCCTCCATACAAGTCTAGCGGCATAATATGCTGGAGAAGAAGACCTTGCTGCTGCGAAGCCCGACTAAGGAATTGTCAAGTGAGACGACTTAGATGCATTCTTGGCTCGGGATACCGTAATGCAATAGTTGACCTGTAGCCTATCTTTGTTCACAAGTAAATAACGTCATCTAGACATCACTCCAAGCATCCAGGATAATTCGATAAGTCCACTGTACCTTTGCATTATTGATTCCAACGGACCCCCACGACTTGATCCTGTTAAATCAATAGTCCTTAGAGTAGATTGGATTCCAATTTTGAACCTGTCCTTGCAGCCACAGTTCTGTTTGTTTACTTGAATGAGTATTTCTTTTGGTTGACATATTTAAATGGCATTAAAGTTCCGTAACTCACTCTTTGCTTTCTTCCGTGTAGTGGACTTGATGAAAGAAGGTGCTACCGTGATACTGCGCAATGCTAAGATAGACATGTTTAAAGGATTTATGAGACTTGCTGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCGAGTTTTACTGTTAAGGAGGATAACAATCTTTCACTCGTTGAATTTGAACTTGTGAATGTCGTGGAAGAGTGAATTTTGTGATCGTGTTCACTTTCCTGCTGCAACCTGACCATAAAATAAAACAATCAAGCTAAGTTACAAGTTTCCTTTGGGGTACCGAAAATGCTCGCAAAAGTTCATTATTAGGAAATAGAATTCTGGAAGCCAGTGGTACGAGAGTTGATTTTCATCCCTGCAGCTTATTGGTGGAACCGTTGTTGGGAACTACAGTCCGGTGGGTAATGGCTGTCAGATGATGGAAGAAGGCTTAGCTGGCTTTTTGATTTTTCATTTGTCTAGTATTTTATTGCTTATGAACACAGTTTATGTTCTTGAACTATCATCAGATGACAAGACTTGCGCCTTGCTTCGTTAAAACTTATGTTTTTGATTATTCGAGGTTGGTGCCAACATAACTGCTTTCAAATTCCAAATCCAACGCATGAATGAGATCAATTACCCCAAAAATGTGAGGATTTCTTGAGTTGTAAGATTTATTGTGGTGTTTATCTAGGAATTTCCAAAGGATTGGTGGCTTGGTTCTGTTGGAGGTTAGAAGGAAGCACGTCTCCACTTTTGGCTACTTTAATGTATCTTGTTTTTTTCTGCTGAAGATCGGTTCTGCTTCAGGAGGTCTATGTTCTTCCAATAAGAAATAGAATGAGAGATTTCTTTTTAATCATCAATTTCGGTACTTTTTGGGTCAAGAAAATCAATTTCATACGTGTGTTTATTGCAACCACAACACAGCAAGGCCGAGAGGTCTCAGAATGGAGAGAGGTAACAAAGAAAGCAATGGAATCTTTTACCTTACATACGTACACTTACGTCTGGTAGGCAGTAGAAGTAAAGGAAAAGGCATCAAAACCATTCAACAGAAGTAAAATTCACAGTGGGTCTCTGCCGTGAGAAAGGGCGTGTACTGATACAGTACAAGAGCCAAGAGCCAACCACACCACACAGAAACCAAAGGGGGAAAATGGAGATCATATGAAGTATTTAATGCATTGCGTCTCTTTGTCGTCATGCTCGCTCATCTTTTATAATAATAATTTATATTTGTATATTTGGAGTCCTAATATCTCATGTCACTGATTCACTACCACCTCCATTTCTTCAAAGAGCTCTGTTCTCCAACACGATGATAAAGCATTCAAATGATTGGATAGCTAAAGGCTGCAACTAGAAAATGTTGATAGCCCAGCCACCACTGTCTGCTCTGCTTTATTACTTATTAGTTTAATCTATCTTTTGGATGCGATCACAATTCACATCTTCGTTTCTTTGGTCTTAATTAGGAGTTAAGACATTTCACTTCACCCACGTTTTCTGTTTTTTAATTTTAATTGCCTTATTCTGGGT

mRNA sequence

ATGACACACTTCTGTGGTGTAGATGAAATTTATCTGGACTTGATGAAAGAAGGTGCTACCGTGATACTGCGCAATGCTAAGATAGACATGTTTAAAGGATTTATGAGACTTGCTGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCGAGTTTTACTGTTAAGGAGGATAACAATCTTTCACTCGTTGAATTTGAACTTGTGAATGTCGTGGAAGAGTGA

Coding sequence (CDS)

ATGACACACTTCTGTGGTGTAGATGAAATTTATCTGGACTTGATGAAAGAAGGTGCTACCGTGATACTGCGCAATGCTAAGATAGACATGTTTAAAGGATTTATGAGACTTGCTGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCGAGTTTTACTGTTAAGGAGGATAACAATCTTTCACTCGTTGAATTTGAACTTGTGAATGTCGTGGAAGAGTGA

Protein sequence

MTHFCGVDEIYLDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNVVEE
Homology
[Close]
BLAST of Spg025458 vs. NCBI nr
Match: XP_022726335.1 (uncharacterized protein At4g28440-like [Durio zibethinus])

HSP 1 Score: 118.6 bits (296), Expect = 2.2e-23
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +DLMKEGATVILRNAKIDMFKG MRLAVD+WGRVEVTEPASFTVKEDNNLSL+E+ELVNV
Sbjct: 74  VDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKEDNNLSLIEYELVNV 133

Query: 72  VEE 75
           VEE
Sbjct: 134 VEE 136

[Close]
BLAST of Spg025458 vs. NCBI nr
Match: XP_022131585.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 2.2e-23
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +D+MKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKEDNNLSL+E+ELVNV
Sbjct: 75  VDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNV 134

Query: 72  VEE 75
           VEE
Sbjct: 135 VEE 137

[Close]
BLAST of Spg025458 vs. NCBI nr
Match: KAG6585156.1 (hypothetical protein SDJN03_17889, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +DLMKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKE+NNLSL+E+ELVNV
Sbjct: 39  VDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEENNLSLIEYELVNV 98

Query: 72  VEE 75
           VEE
Sbjct: 99  VEE 101

[Close]
BLAST of Spg025458 vs. NCBI nr
Match: XP_022951207.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023538137.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >XP_023538138.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >KAG7020076.1 hypothetical protein SDJN02_16758 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +DLMKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKE+NNLSL+E+ELVNV
Sbjct: 75  VDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEENNLSLIEYELVNV 134

Query: 72  VEE 75
           VEE
Sbjct: 135 VEE 137

[Close]
BLAST of Spg025458 vs. NCBI nr
Match: XP_030959215.1 (uncharacterized protein At4g28440-like, partial [Quercus lobata])

HSP 1 Score: 117.5 bits (293), Expect = 5.0e-23
Identity = 60/73 (82.19%), Postives = 65/73 (89.04%), Query Frame = 0 

Query: 7  VDEIYL-----DLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNL 66
          +D IYL     DLMKEG+TVILRNAKIDMFKG MRLAVD+WGRVEVTEPA FTVKEDNNL
Sbjct: 12 IDFIYLGCCLVDLMKEGSTVILRNAKIDMFKGSMRLAVDKWGRVEVTEPADFTVKEDNNL 71

Query: 67 SLVEFELVNVVEE 75
          SL+E+ELVNVVEE
Sbjct: 72 SLIEYELVNVVEE 84

[Close]
BLAST of Spg025458 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-20
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +DLMK GATVILRN++IDMFKG MRL VD+WGR+E T  ASFTVKEDNNLSLVE+EL+NV
Sbjct: 90  VDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149

[Close]
BLAST of Spg025458 vs. ExPASy TrEMBL
Match: A0A6J1BQ40 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111004728 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +D+MKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKEDNNLSL+E+ELVNV
Sbjct: 75  VDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNV 134

Query: 72  VEE 75
           VEE
Sbjct: 135 VEE 137

[Close]
BLAST of Spg025458 vs. ExPASy TrEMBL
Match: A0A7N2L8Q2 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 11 YLDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVN 70
          Y+DLMKEG+TVILRNAKIDMFKG MRLAVD+WGRVEVTEPA FTVKEDNNLSL+E+ELVN
Sbjct: 9  YVDLMKEGSTVILRNAKIDMFKGSMRLAVDKWGRVEVTEPADFTVKEDNNLSLIEYELVN 68

Query: 71 VVEE 75
          VVEE
Sbjct: 69 VVEE 72

[Close]
BLAST of Spg025458 vs. ExPASy TrEMBL
Match: A0A6P5XDC7 (uncharacterized protein At4g28440-like OS=Durio zibethinus OX=66656 GN=LOC111282491 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +DLMKEGATVILRNAKIDMFKG MRLAVD+WGRVEVTEPASFTVKEDNNLSL+E+ELVNV
Sbjct: 74  VDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKEDNNLSLIEYELVNV 133

Query: 72  VEE 75
           VEE
Sbjct: 134 VEE 136

[Close]
BLAST of Spg025458 vs. ExPASy TrEMBL
Match: A0A6J1KS21 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111495976 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +DLMKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKE+NNLSL+E+ELVNV
Sbjct: 75  VDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEENNLSLIEYELVNV 134

Query: 72  VEE 75
           VEE
Sbjct: 135 VEE 137

[Close]
BLAST of Spg025458 vs. ExPASy TrEMBL
Match: A0A6J1GH14 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111454116 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +DLMKEGAT+ILRNAKIDMFKG MRLAVDRWGRVEVTEPASFTVKE+NNLSL+E+ELVNV
Sbjct: 75  VDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEENNLSLIEYELVNV 134

Query: 72  VEE 75
           VEE
Sbjct: 135 VEE 137

[Close]
BLAST of Spg025458 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 107.1 bits (266), Expect = 6.3e-24
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +DLMKEG+TV LRNAKIDM+KG MRLAVD+WGRVEVTEPASF VKED N+SL+E+ELVNV
Sbjct: 76  VDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDTNMSLIEYELVNV 135

Query: 72  VE 74
           VE
Sbjct: 136 VE 137

[Close]
BLAST of Spg025458 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 106.7 bits (265), Expect = 8.2e-24
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           ++LMK GATV LRNAKIDMFKG MRLAVD+WGR+E TEPA  TVKEDNNLSLVE+ELVNV
Sbjct: 120 VELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLVEYELVNV 179

Query: 72  VEE 75
           VEE
Sbjct: 180 VEE 182

[Close]
BLAST of Spg025458 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 99.8 bits (247), Expect = 1.0e-21
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVTEPASFTVKEDNNLSLVEFELVNV 71
           +DLMK GATVILRN++IDMFKG MRL VD+WGR+E T  ASFTVKEDNNLSLVE+EL+NV
Sbjct: 90  VDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149

[Close]
BLAST of Spg025458 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVT-EPASFTVKEDNNLSLVEFELVN 71
           +D+MKEG+ V LRNAKIDM+KG MRLAVDRWGRVEV  EP   TVK+DNNLSL+E+ELV+
Sbjct: 77  VDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNNLSLIEYELVS 136

[Close]
BLAST of Spg025458 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 12  LDLMKEGATVILRNAKIDMFKGFMRLAVDRWGRVEVT-EPASFTVKEDNNLSLVEFELVN 71
           +D+MKEG+ V LRNAKIDM+KG MRLAVDRWGRVEV  EP   TVK+DNNLSL+E+ELV+
Sbjct: 91  VDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNNLSLIEYELVS 150

The following BLAST results are available for this feature:
BLAST of Spg025458 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022726335.12.2e-2392.06uncharacterized protein At4g28440-like [Durio zibethinus][more]
XP_022131585.12.2e-2390.48uncharacterized protein At4g28440-like [Momordica charantia][more]
KAG6585156.13.8e-2390.48hypothetical protein SDJN03_17889, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022951207.13.8e-2390.48uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 unch... [more]
XP_030959215.15.0e-2382.19uncharacterized protein At4g28440-like, partial [Quercus lobata][more]
BLAST of Spg025458 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O494531.4e-2078.33Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P... [more]
BLAST of Spg025458 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BQ401.1e-2390.48uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A7N2L8Q21.1e-2389.06Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A6P5XDC71.1e-2392.06uncharacterized protein At4g28440-like OS=Durio zibethinus OX=66656 GN=LOC111282... [more]
A0A6J1KS211.9e-2390.48uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114959... [more]
A0A6J1GH141.9e-2390.48uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
BLAST of Spg025458 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G23750.16.3e-2482.26Nucleic acid-binding, OB-fold-like protein [more]
AT2G33845.18.2e-2482.54Nucleic acid-binding, OB-fold-like protein [more]
AT4G28440.11.0e-2178.33Nucleic acid-binding, OB-fold-like protein [more]
AT1G10590.11.2e-1973.77Nucleic acid-binding, OB-fold-like protein [more]
AT1G10590.31.2e-1973.77Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 6..63
e-value: 4.6E-21
score: 76.8
NoneNo IPR availablePANTHERPTHR31472OS05G0244600 PROTEINcoord: 12..74
NoneNo IPR availablePANTHERPTHR31472:SF13EXPRESSED PROTEINcoord: 12..74
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 12..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg025458.1Spg025458.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018343 protein farnesylation
cellular_component GO:0005965 protein farnesyltransferase complex
molecular_function GO:0004660 protein farnesyltransferase activity
molecular_function GO:0008270 zinc ion binding