Spg025156 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg025156
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 25-like
Locationscaffold13: 41786470 .. 41787912 (-)
RNA-Seq ExpressionSpg025156
SyntenySpg025156
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCTCTAGGTTCGAGAAAGTGCAGCAGAATCCTAAAGAAACCCAACCCCTTTGAATAATAACCCCTTGTGAAGCAAAATAAAAACATAAAACAAAACAAAAACTTGAGCTTCTCACAACAATTCTCTCTCTCTCTCTCTCTTTCTCTCTGTCTTTCTCTTCAACATCCCAAAATCAAAATCCTGTCATGTAGTGATTTTCCCATGTCCTAGAAGCTTTAAAGCATAATATCATTGTCCAAAGAGTGAGAGAAAATGACTTGCTATCATCCTTGTAAGGCCATCGCTGTTATGGGGTTTGTCTGCCTTCTCTTGTTGAATGGTTCACATCAAAGAGGAGAACCGCCCGTGGCGGGGACGACGACGACAGCGAACGTGGAGACGAAATCTGGTGGAATTTTCGACTCTGGCGACGCCGGTGGTGGGCGCGGCAAGGTTGTTCATCCCGAGTGGCATCTCAACTACATGAGCAAAAGACGAGTTCCCAATGGCCCCGACCCTATTCACAACAGGTACTGCCTACTTTCTAGTTTAGTCGAGATTATAACGTCTTAACCATTTTCAATGATCCAAATTCTATTTACGAAGTCTTAATCAGTTGAACTATAACTTCGAGTGTTTTATATAAAACATTGGTGTTTGTATTTTTGGAATTGTGTGTGTTTTTTTTAATTGGCTTGAGTACTCAACAGAAAAGTGGGAAATTAAATTAAGAAAGTATTTGATAGATTTTAGAGAGAGAGAGAGAAAGGAAAAGAGAGTGGGAGAGATAAAAAGTTAAATTTTACTCACTTTGCCTTTTAAAACTGTTACATTGAGTTGTTTTAGTTTAAACTTTAAAGGGTGTCTTTAAAGTCCTTGGTTGAAGGAGACACAAACATCTTTAAAACCACAGTAAATAAAAGTGTATGTGTGTGTACTTCAATATATTCCATGCCTTTTACTTAACAACAATATCTCTTTAAATTATCCATTGCTAATAAACTATTAACCTTACCTTAAGTCCTACTATATGATACTCTAATTATAATTTCTTAATTTAAAATTTTGAATTTTATGTCACAAATATTAAGTCTAATATGTAAAGTTTAATAAAGTGTATTATATTGAGTGGTAAATCAAAAACTATATATCAATAATTAATTATCATTTATGTTTGGTGAATTTGAGGACTAAATTACTTTATTTATTTTGGTTATTGTTTTGTAGGAGAGCAGGAAATTCTGGACGACCACCAGGCAAAGCTTAGCCGTAGGAAATTAATAAAAGCTTTGTGAGAAATTGGGATTTTCAGATGACACAAGATGCATGCTCAGCCATCTTGTATGTATTACTTTAGGAATTAATGATGAAAACTGATCAGATCGATTCTTCGTTAGAGTTTAGGATCCGCTTGATAAAATTTTTGTTTTTAGTTTTTAGTTTTTAAAAATCCATGTTTA

mRNA sequence

ATGACTTGCTATCATCCTTGTAAGGCCATCGCTGTTATGGGGTTTGTCTGCCTTCTCTTGTTGAATGGTTCACATCAAAGAGGAGAACCGCCCGTGGCGGGGACGACGACGACAGCGAACGTGGAGACGAAATCTGGTGGAATTTTCGACTCTGGCGACGCCGGTGGTGGGCGCGGCAAGGTTGTTCATCCCGAGTGGCATCTCAACTACATGAGCAAAAGACGAGTTCCCAATGGCCCCGACCCTATTCACAACAGGAGAGCAGGAAATTCTGGACGACCACCAGGCAAAGCTTAG

Coding sequence (CDS)

ATGACTTGCTATCATCCTTGTAAGGCCATCGCTGTTATGGGGTTTGTCTGCCTTCTCTTGTTGAATGGTTCACATCAAAGAGGAGAACCGCCCGTGGCGGGGACGACGACGACAGCGAACGTGGAGACGAAATCTGGTGGAATTTTCGACTCTGGCGACGCCGGTGGTGGGCGCGGCAAGGTTGTTCATCCCGAGTGGCATCTCAACTACATGAGCAAAAGACGAGTTCCCAATGGCCCCGACCCTATTCACAACAGGAGAGCAGGAAATTCTGGACGACCACCAGGCAAAGCTTAG

Protein sequence

MTCYHPCKAIAVMGFVCLLLLNGSHQRGEPPVAGTTTTANVETKSGGIFDSGDAGGGRGKVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Homology
BLAST of Spg025156 vs. NCBI nr
Match: XP_022946527.1 (uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 68/101 (67.33%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1   MTCYHP-CKAIAVMGFVCLLLLNGSHQRGEPPVAGTTTTANVETKSGGIFDSGDAGGGRG 60
           M+ Y P CKA+AVMGF+ LLL+NGSHQRG+    G TTT     + GGI    +  GGRG
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTA-AQFGGISKEMEVVGGRG 60

Query: 61  --KVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 99
              VV  EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of Spg025156 vs. NCBI nr
Match: KAG7030012.1 (CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 68/102 (66.67%), Postives = 75/102 (73.53%), Query Frame = 0

Query: 1   MTCYHP-CKAIAVMGFVCLLLLNGSHQRGEPPVAG-TTTTANVETKSGGIFDSGDAGGGR 60
           M+ Y P CKA+AVMGF+ LLL+NGSHQRG+    G TTTT     + GGI    +  GG 
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTTTAAQFGGISKEMEVVGGH 60

Query: 61  G--KVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 99
           G   VV  EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 102

BLAST of Spg025156 vs. NCBI nr
Match: XP_038886261.1 (uncharacterized protein LOC120076488 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-25
Identity = 69/108 (63.89%), Postives = 78/108 (72.22%), Query Frame = 0

Query: 1   MTCYHP-CK---AIAVMGFVCLLLLNGSHQRGEPPV-----AGTTTTANVETKSGGIF-D 60
           M+CY P CK   ++AVM F+ LLL+NGSHQR +P       A  T TA +  +  GI  +
Sbjct: 1   MSCYSPSCKLGNSLAVMVFIFLLLVNGSHQRRQPVAAEMEKATVTITATMTAEFSGISKE 60

Query: 61  SGDAGGGRGKVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 99
                GGRGKVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  MKVVHGGRGKVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 108

BLAST of Spg025156 vs. NCBI nr
Match: XP_023521565.1 (uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.1 uncharacterized protein LOC111805292 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.0 bits (310), Expect = 7.1e-25
Identity = 69/103 (66.99%), Postives = 76/103 (73.79%), Query Frame = 0

Query: 1   MTCYHP-CKAIAVMGFVCLLLLNGSHQRGEPPVAG--TTTTANVETKSGGIFDSGDAGGG 60
           M+ Y P CKA+AVMGF+ LLL+NGSHQRG+    G  T TTA    + GGI    +  GG
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMMTITTA---AQFGGISKEMEVVGG 60

Query: 61  RG--KVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 99
           RG   VV  EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  RGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of Spg025156 vs. NCBI nr
Match: XP_022999782.1 (uncharacterized protein LOC111494028 [Cucurbita maxima])

HSP 1 Score: 123.6 bits (309), Expect = 9.2e-25
Identity = 66/101 (65.35%), Postives = 74/101 (73.27%), Query Frame = 0

Query: 1   MTCYHP-CKAIAVMGFVCLLLLNGSHQRGEPPVAGTTTTANVETKSGGIFDSGDAGGGRG 60
           M+ Y P CKA+AVMGF+ LLL+NGSHQRG+    G  TT     + GGI    +  GGRG
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMGTTMTA-AQFGGISKEMEVVGGRG 60

Query: 61  --KVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 99
              VV  EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GKDVVRSEWHLNYVSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of Spg025156 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.2e-04
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 67 HLNYMSKRRVPNGPDPIHNRRAGNSGRPP 96
          +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51 NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

BLAST of Spg025156 vs. ExPASy TrEMBL
Match: A0A6J1G3Y8 (uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC111450563 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26
Identity = 68/101 (67.33%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1   MTCYHP-CKAIAVMGFVCLLLLNGSHQRGEPPVAGTTTTANVETKSGGIFDSGDAGGGRG 60
           M+ Y P CKA+AVMGF+ LLL+NGSHQRG+    G TTT     + GGI    +  GGRG
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTA-AQFGGISKEMEVVGGRG 60

Query: 61  --KVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 99
              VV  EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of Spg025156 vs. ExPASy TrEMBL
Match: A0A6J1KBR7 (uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.5e-25
Identity = 66/101 (65.35%), Postives = 74/101 (73.27%), Query Frame = 0

Query: 1   MTCYHP-CKAIAVMGFVCLLLLNGSHQRGEPPVAGTTTTANVETKSGGIFDSGDAGGGRG 60
           M+ Y P CKA+AVMGF+ LLL+NGSHQRG+    G  TT     + GGI    +  GGRG
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMGTTMTA-AQFGGISKEMEVVGGRG 60

Query: 61  --KVVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 99
              VV  EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GKDVVRSEWHLNYVSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of Spg025156 vs. ExPASy TrEMBL
Match: A0A0A0KJ25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.4e-24
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 0

Query: 1   MTCY-HPCK--AIAVMGFVCLLLLNGSHQRGEPPVAGTTTTANVETKSGGIFDSGDA-GG 60
           MTCY   CK  ++ +M F+ LLL NGS QR EP V G  TTA  +  SG   ++  A GG
Sbjct: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60

Query: 61  GR-GKVV-HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 99
           GR GKVV HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

BLAST of Spg025156 vs. ExPASy TrEMBL
Match: A0A5A7TRB3 (Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00170 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 65/104 (62.50%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 1   MTCYHPCK-----AIAVMGFVCLLLLNGSHQRGEPPVAGTTTTANVETKSGGIFDSGDAG 60
           MTCY  C      ++ VM F+ LLL NGS QR EP V G  TTA +  +  G+F      
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTA-MGDEFSGVFKKTTVV 60

Query: 61  GGRGKVV-HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 99
            G GKV  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  VGGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of Spg025156 vs. ExPASy TrEMBL
Match: A0A1S3CMA2 (uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 65/104 (62.50%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 1   MTCYHPCK-----AIAVMGFVCLLLLNGSHQRGEPPVAGTTTTANVETKSGGIFDSGDAG 60
           MTCY  C      ++ VM F+ LLL NGS QR EP V G  TTA +  +  G+F      
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTA-MGDEFSGVFKKTTVV 60

Query: 61  GGRGKVV-HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 99
            G GKV  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  VGGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of Spg025156 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 52.0 bits (123), Expect = 3.2e-07
Identity = 34/95 (35.79%), Postives = 48/95 (50.53%), Query Frame = 0

Query: 8   KAIAVMGFVCLLLLNG---SHQRGEPPVAGTTTTANVETKSGGIFDSGDAGGGRGKVVHP 67
           + +  +G V LL+++     + + +      TT  N+              G R      
Sbjct: 14  RTLFTVGVVTLLMIDAFVLQNNKEDDKTKEITTAVNMNNSDAKEIQQELEDGSRND---- 73

Query: 68  EWHLNYM-SKRRVPNGPDPIHNRRAGNSGRPPGKA 99
              L+Y+ SKR+VP GPDPIHNRRAGNS RPPG+A
Sbjct: 74  --DLSYVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102

BLAST of Spg025156 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 67 HLNYMSKRRVPNGPDPIHNRRAGNSGRPP 96
          +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51 NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022946527.13.7e-2667.33uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3... [more]
KAG7030012.13.7e-2666.67CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperm... [more]
XP_038886261.13.2e-2563.89uncharacterized protein LOC120076488 [Benincasa hispida][more]
XP_023521565.17.1e-2566.99uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.... [more]
XP_022999782.19.2e-2565.35uncharacterized protein LOC111494028 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q8LFL44.2e-0468.97CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P... [more]
Match NameE-valueIdentityDescription
A0A6J1G3Y81.8e-2667.33uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
A0A6J1KBR74.5e-2565.35uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028... [more]
A0A0A0KJ258.4e-2467.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1[more]
A0A5A7TRB32.5e-2362.50Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CMA22.5e-2362.50uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=... [more]
Match NameE-valueIdentityDescription
AT1G69970.23.2e-0735.79CLAVATA3/ESR-RELATED 26 [more]
AT3G28455.13.0e-0568.97CLAVATA3/ESR-RELATED 25 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..60
NoneNo IPR availablePANTHERPTHR34277:SF2CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 7..98
IPR039316CLAVATA3/ESR (CLE)-related protein 25/26PANTHERPTHR34277CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 7..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg025156.1Spg025156.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment