Spg025084 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg025084
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Dynein light chain
Location	scaffold12: 9444916 .. 9446725 (+)
RNA-Seq Expression	Spg025084
Synteny	Spg025084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCGTTCTACTGCTAAATTAACTCTTCGAAGACACTAAAAACGACGGCGTATTGCCAGCTGTACCGGAGAACTAATTTCACCGACGGCTCCATTAGAGACAGATTTCAAAAGCTGCAATAAATTCCAGAAAGAGTTAAATCTTTCATCCTCTCAGATTCTGAGAAATCACGAGCCTCGCTTACAATTTTCACTCAAAGGATAAAGTAATTCCAGATTTCTCGAAGCGAAAAAACTTGCAGGGGTTGTTGAAAAGCCAACTACCCAATCGGTGCCGGAGATCGGAGAAGAAGAGCCAGAAGAAATGAGCAACGATGCGAAGAGAAGCATCCAAGGGAATCTAATGGTGAAATCTGTATCGGAAGATCGGAAACCGCCGGCGGTGGCCACTGCCGGCAAGAAAATTGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTTGCCATAGCTGTTAGCTCTCTTTTGTCAATCGCTATTCTTCTAATTTCGACTTCGAATTCCATTTTTTAACTGTTTTTTTTTTTTTTTTTCTTCTTGTGATCCTCGTTTTATTCGGGATTTTGGTTTCAGGCATTTGAAAAGCATAGTGTAGAGAAGGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTGGGCCGTAATTTTGGTAACTGATCTCTACCTTTCTAAAATTTCAACTGAAACTTTTGTGATTTTGCTGCTTGATTACTCTGCCTGCTGGTTTCAAGTTTGGTGGCGAAGGTTTAGTTTTTGAATGGAATAGATCTATGCTTGTAGGTTGGTAAATTAAATTGTTTGATCTGGTTAATTAAACTAGTTGAGTAGAACGAGAAGCTACTAGACTACTGTGGATATTCGATTATTCACCTGCATTTTATAAAAACGAGGTCCTTCCACAGGATTTCATTGAATTGAGCTGATTTAGAATTGTAAAGAGAAACTTTTACAGGGACTATGAAAGTTTTTTTTTCCCCATTCTCTTTCCTTCTATAATCTGATCTTAGTTTTTTCATGAAACTTGGACTCAGAATCACCATGGACTAATCTGTTGTCTCTTAAAGGCGATCATTATTGGTGTTATGAAGGTGGTTGGTGTTTGAGAGTAGGACGGTTGTCTTGTTAGATTAGTCGAGTTGTAAATAGGTGGACCCAAAGTTAACAAAAAGGAAACTGAAATTGTTGGCTCTTCTAGAAGTTAGAAACTCTCCCTCTTGAACATAAGAACCTCTTAACCCTTTAAGTTGATTCTCATGGTAGGTTGGATTAATGTTTCTGTCAAAGTTTTGTTTTGAGTTATGAGTTGGCAACCTAATCAATGAAGTTCGAGCAGACTAATAGAAGAGGGTCCCTTCCTATCCTAGGGAGTAAGTGAGACTCTAATCTGACCTCCATAATTTAGTCAAGTTCGTGCAGCACATTTATTTCCCTTTCTACTTTAATAATTTTGTTAAGGTCTGAAAATTCTGACCAATTGCTTTCAGTTCTTGCCAACCAAAACATATTCAGATTCCTGAGAAAGATTAGACATCCCAAATCATTCAAAAAGAAAAGGGAGAGGATTTCTTCATATTTCTAGAAACCTCCCGAGTGGTCAGTGTCAATGACAATGTTATCAACGTGTATAGCTAGTTGATTAAAACTAAGTTCAGACCGTTAGTATAAGGCAAATTAATTAGACTTACTCTTCTTCATTTCAAGTTTCACAACTTCTAAGACTCAGTTTAATAACCATTTGGTTTTATGTTTTTGAAAATTTATCTTG

mRNA sequence

ATGAGCAACGATGCGAAGAGAAGCATCCAAGGGAATCTAATGGTGAAATCTGTATCGGAAGATCGGAAACCGCCGGCGGTGGCCACTGCCGGCAAGAAAATTGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTTGCCATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTGGGCCGTAATTTTGGTAACTGA

Coding sequence (CDS)

ATGAGCAACGATGCGAAGAGAAGCATCCAAGGGAATCTAATGGTGAAATCTGTATCGGAAGATCGGAAACCGCCGGCGGTGGCCACTGCCGGCAAGAAAATTGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTTGCCATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTGGGCCGTAATTTTGGTAACTGA

Protein sequence

MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

Homology

[Close]

BLAST of Spg025084 vs. NCBI nr
Match: XP_022959519.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_023547610.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo] >KAG6575076.1 Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.8 bits (447), Expect = 8.6e-41
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKP AVAT GKKIVIKSADMFGDVQKEA+DVAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Spg025084 vs. NCBI nr
Match: KAG7013650.1 (Dynein light chain 1, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKP AVAT GKKIVIKSADMFGDVQKEA+DVAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 92
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91

[Close]

BLAST of Spg025084 vs. NCBI nr
Match: XP_038906782.1 (dynein light chain 1, cytoplasmic-like [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 2.5e-40
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKPPAVAT GKKIVIKSADMFGDVQKEA++VAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATTGKKIVIKSADMFGDVQKEAIEVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKD+AE IKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDIAECIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Spg025084 vs. NCBI nr
Match: KAG7026318.1 (Dynein light chain 2, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.5 bits (441), Expect = 4.3e-40
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGN MVK+VSEDRKP AVAT GKKIVIKSADMFGDVQKEAVDVAI AFEKH
Sbjct: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 92

[Close]

BLAST of Spg025084 vs. NCBI nr
Match: XP_023006429.1 (dynein light chain 1, cytoplasmic [Cucurbita maxima])

HSP 1 Score: 174.1 bits (440), Expect = 5.6e-40
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKP  +AT GKKIVIKSADMFGDVQKEA+DVAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLVMATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Spg025084 vs. ExPASy Swiss-Prot
Match: Q39580 (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.2e-18
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 27 VATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIV 86
          +A+   K VIK+ADM  ++Q +AVD A  A EK+++EKD+A YIKKEFD++H PTWHCIV
Sbjct: 1  MASGSSKAVIKNADMSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIV 60

Query: 87 GRNFGN 93
          GRNFG+
Sbjct: 61 GRNFGS 66

[Close]

BLAST of Spg025084 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-18
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 32 KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91
          +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 N 93
          +
Sbjct: 64 S 64

[Close]

BLAST of Spg025084 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-18
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 32 KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 N 93
          +
Sbjct: 64 S 64

[Close]

BLAST of Spg025084 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-18
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 32 KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 N 93
          +
Sbjct: 64 S 64

[Close]

BLAST of Spg025084 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-18
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 32 KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 N 93
          +
Sbjct: 64 S 64

[Close]

BLAST of Spg025084 vs. ExPASy TrEMBL
Match: A0A6J1H8A5 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111460475 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.2e-41
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKP AVAT GKKIVIKSADMFGDVQKEA+DVAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Spg025084 vs. ExPASy TrEMBL
Match: A0A6J1L253 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111499159 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.7e-40
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKP  +AT GKKIVIKSADMFGDVQKEA+DVAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLVMATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Spg025084 vs. ExPASy TrEMBL
Match: A0A1S3C7T8 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103497840 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.6e-40
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKPPAV   GKKIVIKSADMFGDVQKEA+DVAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKD+AE IKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDIAECIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Spg025084 vs. ExPASy TrEMBL
Match: A0A6J1EQC6 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111436746 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.9e-40
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGN MVK+VSEDRKP AVAT GKKIVIKSADMFGDVQKEAVDVAI AFEKH
Sbjct: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Spg025084 vs. ExPASy TrEMBL
Match: A0A6J1KH59 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111494322 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGN MVK+VSEDRKP AVAT GKKIVIKSADMFGDVQKEAVD+AI AFEKH
Sbjct: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDIAIVAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Spg025084 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 110.5 bits (275), Expect = 7.1e-25
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 6  KRSIQGNLMVKSVSEDRKP-----PAVATAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 65
          K+S+ G    +++ +DR+       A   AGK+ VIKSADM  D+QKEA+++AI+AFEK+
Sbjct: 7  KKSVNGGAPAQTILDDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIEIAISAFEKY 66

Query: 66 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKD+AE IKKEFDK+HG TWHCIVGRNFG+
Sbjct: 67 SVEKDIAENIKKEFDKKHGATWHCIVGRNFGS 98

[Close]

BLAST of Spg025084 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 36/87 (41.38%), Postives = 46/87 (52.87%), Query Frame = 0


Query: 10  QGNLMVKSVSEDRKPPAVATAGKKIV-IKSADMFGDVQKEAVDVA---IAAFEKHSVEKD 69
           +G   V  V  D      A A    V I +ADM G +Q  A   A   + + EK S  K 
Sbjct: 92  EGRKSVSHVERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFS-SKH 151

Query: 70  VAEYIKKEFDKRHGPTWHCIVGRNFGN 93
           +A  +KKEFDK +GP WHCIVG +FG+
Sbjct: 152 MAFNLKKEFDKGYGPAWHCIVGSSFGS 177

[Close]

BLAST of Spg025084 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-06
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 33 KIVIKSADMFGDVQKEAVDVAIAAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNF 92
          K +++ +DM   +Q +A+  A  A +   V   K +A +IKKEFD+R+G  W C+VG NF
Sbjct: 5  KAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNF 64

[Close]

BLAST of Spg025084 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 33 KIVIKSADMFGDVQKEAVDVAIAAFEKHSV--EKDVAEYIKKEFDKRHGPTWHCIVGRNF 92
          K  ++  DM   +Q +A+ +A  + +   V     +A +IKKEFD+R+G  W C+VG NF
Sbjct: 5  KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64

[Close]

BLAST of Spg025084 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 33 KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNF 92
          K V+   DM   ++++A+ +A  A +   V +   +A +IKKEFD+ +G  W CIVG +F
Sbjct: 5  KAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHF 64

The following BLAST results are available for this feature:

BLAST of Spg025084 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959519.1	8.6e-41	95.65	dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_023547610.1 dyne...	[more]
KAG7013650.1	1.1e-40	96.70	Dynein light chain 1, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038906782.1	2.5e-40	93.48	dynein light chain 1, cytoplasmic-like [Benincasa hispida]	[more]
KAG7026318.1	4.3e-40	94.57	Dynein light chain 2, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023006429.1	5.6e-40	93.48	dynein light chain 1, cytoplasmic [Cucurbita maxima]	[more]

BLAST of Spg025084 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39580	6.2e-18	60.61	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=30...	[more]
Q22799	8.2e-18	63.93	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q3MHR3	8.2e-18	65.57	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	8.2e-18	65.57	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]
Q9D0M5	8.2e-18	65.57	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1	[more]

BLAST of Spg025084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8A5	4.2e-41	95.65	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111460475 PE=3 SV=1	[more]
A0A6J1L253	2.7e-40	93.48	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111499159 PE=3 SV=1	[more]
A0A1S3C7T8	4.6e-40	92.39	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103497840 PE=3 SV=1	[more]
A0A6J1EQC6	7.9e-40	93.48	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111436746 PE=3 SV=1	[more]
A0A6J1KH59	1.0e-39	92.39	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111494322 PE=3 SV=1	[more]

BLAST of Spg025084 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15930.1	7.1e-25	58.70	Dynein light chain type 1 family protein	[more]
AT5G20110.1	1.1e-06	41.38	Dynein light chain type 1 family protein	[more]
AT1G52240.2	3.3e-06	40.98	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	1.6e-05	37.70	Dynein light chain type 1 family protein	[more]
AT4G27360.1	2.1e-05	37.10	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 29..92 e-value: 1.1E-21 score: 88.1
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 33..91 e-value: 3.7E-22 score: 78.5
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 3..91
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 30..92 e-value: 1.1E-24 score: 88.4
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 30..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR11886:SF35	DYNEIN LIGHT CHAIN 2, CYTOPLASMIC	coord: 3..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg025084.1	Spg025084.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding