Spg025062 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg025062
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionF-box and associated interaction domains-containing protein
Locationscaffold12: 10400729 .. 10402716 (-)
RNA-Seq ExpressionSpg025062
SyntenySpg025062
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGGCGGCGCAAAGGAGGCTCGAGGGCTTGTTAAGGAAGGCGACAAGGGCCGATGAATGGGGGAAAATGAAAGGCGTTTTCTGGCCCCCTCTGAGCCGAGTGGTGCTTGTGTGGCAGGTGTGCCACGACGAAACAAGGGAATGAAAGGCCGCTTTGCGTTGGAAGCTCTTTACCCTCCCCATAATGAGGGCTCTGTAGTCTTGGGGAGCGTTGGAGCTTGCTTCTTCTCCAGAGTTTTCTTGGTCATCAATACGACCTGTCCTTAATAGAACCGATCTGATTCTCTGAACAATCGGAATTTCGTACTATTCTGTCGGATCCTCCCTATCTCCTGATCGAGCTTGTGTAGGTAGATGTTGCCTGGTAGGGCCGATAGTAGTACACTGTGTGGGACGAAGTAGTAAGGGCCCTTCGCACCTCCTACGAGTCATCCGACGGAAAAGACTTTCTGAATGGAGTAAAATAACTTGGGATCGTCGATCTCTTCCTTAAAGATTGAGATGAGTCGATGTCGGTCGATGGTGTGAAAACACTTCCTGATGTCGAATTCCAAAAACCAGCGAGAGGTTCCCCACTTTCTTTGGTCCATTTTAGGGCCGAGTGGCGGCCTCGACTCGAGTGGAAGTGCGATGTGTCTGGAAACTCGGGATCGTAAATGGATTCGAGTACCATTCTGATCGCCTCTTTCATGATCTTTTCTATAGGGCGAACTACTGTGAGCGGTCTAAACTTCGACCCAGATTTCTTTCTTCATATTGTAAAGGGGAGCAAAACTCGTTTTTTGCTCCCTTTATTGATAGATCAAGGACCCTCCTGCTGTCATTTTAGTGACTCATAGGGCTTCCCTCAGCTCAGTCTTTTTGGTTCTTGAGAATGGTCGCCACCTCTCCCAAGACCATAATGATTGTCCCTGCCCAATGGATCTACATCCATCCCTGAATGTCGTCGGGTACTGTTCACTTCCCAGCCATTCTTATAACCGTCACCTGTAATCCGCACAGGTGTGTCCGGTGCCCCTGAGTGGACAAGAAAGAAAGGAGATTTCTCGGAGCAACCCAACCCCCCAAGGTTTCAGACCCAGGAGTCAACTTTCTCGTATGAGCATTCGGTACATGTATCAGTCCGTGGAAGAGTGAAAGGGTCACCACTACTGAGGATCTCCACCCTAATCTTAGATAGGTCGTCTGAGGGTTCGCCGCGATTCATTGTTGTGCTTACACACTAGGCTACCCTTCTCTGAAAGCTCCGCGGGACCACCTACCACTAGTCTTCAGCCGGAGGGGTTTATTGCACAAAAATGCCGGGATGCATGCCCTCGAAGAGAGAAGCCCAACGAATGTCAGATGCAAAGCCCCGCACCTCATTAAGATCATATTGGCATACTTTCCCAAAAAAAAAGAGCAGACCCTATTGAAGACGAGAGTGAGGTACAACAAGGCCATTTTTGTCCACCGCCCATCTCATAGAGTCGTACGTGGACGTTACCGCTCATACAGCTCCCAGCCAGCAAGTAGTTAGCCTTCCTCTACAAATAATGGAAGTGTGGATGAATCGACATCAAATAGAGGAATTCAGTTTTTCTTTTCAAATAGCGACATGTCAGATCCGGGGCATCCCTTTCACAAAAACCTACGGATCCCCCTCCTATCAGCACCTTGTGATCTTCTCAAAGATCATTACGAGCCCTATCCGTCAATGTTTTTGTAGATTTAGAAAATTCCATGGTGGATCAGGACGAGAATGAATTCGGGAATCCAGGACATACTCATCCTGGAGCTTCTACTCTTCTCTGGGGAGGAGTTTTTATATCTCGAGAGGTGAGTCGAGGGTAGCCCCCCGCTTGATCGATTTCTCGGAATCAGAGGAAGATCTCTCATCTTCTGACCCTGAACAAGAATGAGTTGCTCTCGATGTGAGATCAGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCTAGAGCAGCAACCCCCGGATAAGCCTTAA

mRNA sequence

ATGAGGAAGGCGGCGCAAAGGAGGCTCGAGGGCTTGTTAAGGAAGGCGACAAGGGCCGATGAATGGGGGAAAATGAAAGGCGTTTTCTGGCCCCCTCTGAGCCGAGTGGTGCTTGTGTGGCAGGGCCGAGTGGCGGCCTCGACTCGAGTGGAAGTGCGATGTGTCTGGAAACTCGGGATCGTAAATGGATTCGAGTACCATTCTGATCGCCTCTTTCATGATCTTTTCTATAGGGCGAACTACTGTGTGTCCGGTGCCCCTGAGTGGACAAGAAAGAAAGGAGATTTCTCGGAGCAACCCAACCCCCCAAGGTTTCAGACCCAGGAGTCAACTTTCTCGTATGAGCATTCGGACGAGAATGAATTCGGGAATCCAGGACATACTCATCCTGGAGCTTCTACTCTTCTCTGGGGAGGAGTTTTTATATCTCGAGAGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCTAGAGCAGCAACCCCCGGATAAGCCTTAA

Coding sequence (CDS)

ATGAGGAAGGCGGCGCAAAGGAGGCTCGAGGGCTTGTTAAGGAAGGCGACAAGGGCCGATGAATGGGGGAAAATGAAAGGCGTTTTCTGGCCCCCTCTGAGCCGAGTGGTGCTTGTGTGGCAGGGCCGAGTGGCGGCCTCGACTCGAGTGGAAGTGCGATGTGTCTGGAAACTCGGGATCGTAAATGGATTCGAGTACCATTCTGATCGCCTCTTTCATGATCTTTTCTATAGGGCGAACTACTGTGTGTCCGGTGCCCCTGAGTGGACAAGAAAGAAAGGAGATTTCTCGGAGCAACCCAACCCCCCAAGGTTTCAGACCCAGGAGTCAACTTTCTCGTATGAGCATTCGGACGAGAATGAATTCGGGAATCCAGGACATACTCATCCTGGAGCTTCTACTCTTCTCTGGGGAGGAGTTTTTATATCTCGAGAGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCTAGAGCAGCAACCCCCGGATAAGCCTTAA

Protein sequence

MRKAAQRRLEGLLRKATRADEWGKMKGVFWPPLSRVVLVWQGRVAASTRVEVRCVWKLGIVNGFEYHSDRLFHDLFYRANYCVSGAPEWTRKKGDFSEQPNPPRFQTQESTFSYEHSDENEFGNPGHTHPGASTLLWGGVFISREQEKKEEELDALEQQPPDKP
Homology
[Close]
BLAST of Spg025062 vs. NCBI nr
Match: KAF3592190.1 (hypothetical protein DY000_02021681 [Brassica cretica])

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-18
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 43  RVAASTRVEVRCVWKLGIVNGFEYHSDRLFHDLFYRANYCVSGAPEWTRKKGDFSEQPNP 102
           RVAA T+ E+RCV KLGIVNGFEYHSDRLFHDLFYR   CV G P   R++ DFSEQP+ 
Sbjct: 106 RVAALTQAEMRCVRKLGIVNGFEYHSDRLFHDLFYR---CV-GTPLSGRERKDFSEQPS- 165

Query: 103 PRFQTQESTFSYEHS 118
            RFQTQESTF YEHS
Sbjct: 166 -RFQTQESTFPYEHS 174

[Close]
BLAST of Spg025062 vs. NCBI nr
Match: GAU21408.1 (hypothetical protein TSUD_32380 [Trifolium subterraneum])

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-08
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 43  RVAASTRVEVRCVWKLGIVNGFEYHSDRLFHDLFYRA 80
           RVAAS + +VRCVWKLGI+NGFEYH DRLF DLFYRA
Sbjct: 253 RVAASIQAKVRCVWKLGIINGFEYHFDRLFDDLFYRA 289

[Close]
BLAST of Spg025062 vs. NCBI nr
Match: GEX44295.1 (reverse transcriptase domain-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-08
Identity = 45/103 (43.69%), Postives = 45/103 (43.69%), Query Frame = 0 

Query: 83  VSGAPEWTRKKGDFSEQPNPPRFQTQESTFSYEHS------------------------- 142
           V   PEWTRKKG F E    PRFQTQESTF YEHS                         
Sbjct: 368 VFAPPEWTRKKG-FLEA--TPRFQTQESTFPYEHSAPEEGSPTNVRCKAPHLIKIILEYS 427

[Close]
BLAST of Spg025062 vs. NCBI nr
Match: RDY14781.1 (hypothetical protein CR513_00081, partial [Mucuna pruriens])

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-07
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 1   MRKAAQRRLEGLLRKATRADEWGKMKGVFWPPLSRVVLVWQGRVAASTRVE-------VR 60
           ++KAAQRRLEGLLRKA RADE GK KGVFW PL R   VW G  A  T  E       + 
Sbjct: 196 IKKAAQRRLEGLLRKAARADEGGKTKGVFWSPLRRGYTVWDGVRALLTSYESSGGKDFMN 255

Query: 61  CVWKLGIVNGF 65
            V +LGIV+ F
Sbjct: 256 GVKELGIVDLF 266

[Close]
BLAST of Spg025062 vs. NCBI nr
Match: XP_021685654.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC110668632 [Hevea brasiliensis])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-07
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 104 RFQTQESTFSYEHS----DENEFGNPGHTHPGASTLLWGGVFISRE 146
           R Q +E  FS++HS    DENE GNPGHTHPGAS LLWGG+FI RE
Sbjct: 178 RHQIEEFGFSFQHSMVDQDENESGNPGHTHPGASALLWGGIFIDRE 223

[Close]
BLAST of Spg025062 vs. ExPASy TrEMBL
Match: A0A2Z6LUB0 (Fe2OG dioxygenase domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_32380 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 43  RVAASTRVEVRCVWKLGIVNGFEYHSDRLFHDLFYRA 80
           RVAAS + +VRCVWKLGI+NGFEYH DRLF DLFYRA
Sbjct: 253 RVAASIQAKVRCVWKLGIINGFEYHFDRLFDDLFYRA 289

[Close]
BLAST of Spg025062 vs. ExPASy TrEMBL
Match: A0A371II96 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00081 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.9e-08
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 1   MRKAAQRRLEGLLRKATRADEWGKMKGVFWPPLSRVVLVWQGRVAASTRVE-------VR 60
           ++KAAQRRLEGLLRKA RADE GK KGVFW PL R   VW G  A  T  E       + 
Sbjct: 196 IKKAAQRRLEGLLRKAARADEGGKTKGVFWSPLRRGYTVWDGVRALLTSYESSGGKDFMN 255

Query: 61  CVWKLGIVNGF 65
            V +LGIV+ F
Sbjct: 256 GVKELGIVDLF 266

[Close]
BLAST of Spg025062 vs. ExPASy TrEMBL
Match: A0A5A7Q1Q1 (F-box and associated interaction domains-containing protein OS=Striga asiatica OX=4170 GN=STAS_15627 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1   MRKAAQRRLEGLLRKATRADEWGKMKGVFWPPLSRVVLV 40
           MRKA QRRLEGLLRKA RADE GK KG+FW PLSR VLV
Sbjct: 92  MRKAKQRRLEGLLRKAARADEGGKTKGLFWSPLSRGVLV 130

[Close]
BLAST of Spg025062 vs. ExPASy TrEMBL
Match: A0A5K0ZJQ1 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS10620 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.0e-06
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MRKAAQRRLEGLLRKATRADEWGKMKGVFWPPLSR 36
          MRKAAQRRLEGLLRKA RADE GK KGVFW PL R
Sbjct: 12 MRKAAQRRLEGLLRKAARADEGGKTKGVFWSPLRR 46

[Close]
BLAST of Spg025062 vs. ExPASy TrEMBL
Match: A0A5N5IX32 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_030117 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 118 DENEFGNPGHTHPGASTLLWGGVFISRE 146
           DENE GNPGHTHPGAS LLWGGVFI RE
Sbjct: 5   DENESGNPGHTHPGASALLWGGVFIDRE 32

The following BLAST results are available for this feature:
BLAST of Spg025062 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3592190.13.7e-1873.33hypothetical protein DY000_02021681 [Brassica cretica][more]
GAU21408.12.6e-0881.08hypothetical protein TSUD_32380 [Trifolium subterraneum][more]
GEX44295.14.5e-0843.69reverse transcriptase domain-containing protein [Tanacetum cinerariifolium][more]
RDY14781.11.0e-0756.34hypothetical protein CR513_00081, partial [Mucuna pruriens][more]
XP_021685654.11.3e-0767.39LOW QUALITY PROTEIN: uncharacterized protein LOC110668632 [Hevea brasiliensis][more]
BLAST of Spg025062 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg025062 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2Z6LUB01.3e-0881.08Fe2OG dioxygenase domain-containing protein OS=Trifolium subterraneum OX=3900 GN... [more]
A0A371II964.9e-0856.34Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00081 P... [more]
A0A5A7Q1Q11.2e-0682.05F-box and associated interaction domains-containing protein OS=Striga asiatica O... [more]
A0A5K0ZJQ16.0e-0685.71Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS10... [more]
A0A5N5IX321.7e-0589.29Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_030117 PE=4 SV=1[more]
BLAST of Spg025062 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg025062.1Spg025062.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity