Spg024940 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024940
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	scaffold12: 11280141 .. 11281049 (+)
RNA-Seq Expression	Spg024940
Synteny	Spg024940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGAATCCAATGAGTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCAAGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTTCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAGTAAAGGATCGTCCACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGAACTAGAGCAGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGGTTTTCCTTGACTTTGTCCGTGTCAACAAACAATTCGAAATGGCTCGACTTTTTTAGAACAGGTCCGAGTCAAATAGTAATGATTTGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTGCCCTCTCGGGGACTTGCTTAA

mRNA sequence

ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGAATCCAATGAGTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCAAGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTTCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAGTAAAGGATCGTCCACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTGCCCTCTCGGGGACTTGCTTAA

Coding sequence (CDS)

ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGAATCCAATGAGTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCAAGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTTCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAGTAAAGGATCGTCCACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTGCCCTCTCGGGGACTTGCTTAA

Protein sequence

MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLPSRGLA

Homology

[Close]

BLAST of Spg024940 vs. NCBI nr
Match: RZC88934.1 (hypothetical protein C5167_030630 [Papaver somniferum])

HSP 1 Score: 263.1 bits (671), Expect = 1.8e-66
Identity = 146/193 (75.65%), Postives = 148/193 (76.68%), Query Frame = 0


Query: 15  MSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITA 74
           M+SKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITA
Sbjct: 1   MTSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 75  YIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSAL------- 134
           YIPGIGHN QEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRSSAL       
Sbjct: 61  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 120

Query: 135 -----------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAV 178
                                  ISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAV
Sbjct: 121 SKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAV 180

[Close]

BLAST of Spg024940 vs. NCBI nr
Match: RZC70923.1 (hypothetical protein C5167_034128 [Papaver somniferum])

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-61
Identity = 138/185 (74.59%), Postives = 140/185 (75.68%), Query Frame = 0


Query: 15  MSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITA 74
           M+SKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITA
Sbjct: 1   MTSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 75  YIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSAL------- 134
           YIPGIGHN QEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRSSAL       
Sbjct: 61  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 120

Query: 135 -----------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAV 170
                                  ISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAV
Sbjct: 121 SKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAV 176

[Close]

BLAST of Spg024940 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 5.9e-57
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           MEEGRRFSNEEK+PM+SKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRK
Sbjct: 17  MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 76

Query: 61  VSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRP 120
           V+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR 
Sbjct: 77  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 136

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 137 QGRSSAL 143

[Close]

BLAST of Spg024940 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 224.2 bits (570), Expect = 9.4e-55
Identity = 116/127 (91.34%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           MEEGRRFSNEEK+PM+SKELNEEPYEVKIS TVLSSGSKGDLS+NFSTITPKKPNSALRK
Sbjct: 17  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSINFSTITPKKPNSALRK 76

Query: 61  VSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRP 120
           V+RVRLTSGFEITAYIPGIGHNLQE+ VVLVRG RVKDLP+VRYHIVRGTLDAV VKDR 
Sbjct: 77  VARVRLTSGFEITAYIPGIGHNLQEYFVVLVRGERVKDLPNVRYHIVRGTLDAVGVKDRQ 136

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 137 QGRSSAL 143

[Close]

BLAST of Spg024940 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-54
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           MEEGRRFSNEEK+PM+SKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPK  NSALRK
Sbjct: 17  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKNQNSALRK 76

Query: 61  VSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRP 120
           V+RVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLP VRYHIVRGTLDAV VKDR 
Sbjct: 77  VARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 136

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 137 QGRSSAL 143

[Close]

BLAST of Spg024940 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.1e-41
Identity = 86/100 (86.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 32  TVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLV 91
           T + SGSKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLV
Sbjct: 35  TRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLV 94

Query: 92  RGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP 132
           RGGRVKDLP VRYHIVRGTLDAV VKDR QGRS   +  P
Sbjct: 95  RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSQYGVKKP 134

[Close]

BLAST of Spg024940 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-35
Identity = 76/93 (81.72%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 39  KGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 98
           +G  +  +STITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 99  LPDVRYHIVRGTLDAVEVKDRPQGRSSALISNP 132
           LP VRYHIVRGTLDAV VKDR QGRS   +  P
Sbjct: 91  LPGVRYHIVRGTLDAVGVKDRQQGRSKYGVKKP 123

[Close]

BLAST of Spg024940 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-35
Identity = 75/80 (93.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 48  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIV 107
           TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVEVKDRPQGRSSAL 128
           RGTLDAV VKDR QGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of Spg024940 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-35
Identity = 75/80 (93.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 48  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIV 107
           TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVEVKDRPQGRSSAL 128
           RGTLDAV VKDR QGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of Spg024940 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-35
Identity = 75/80 (93.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 48  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIV 107
           TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVEVKDRPQGRSSAL 128
           RGTLDAV VKDR QGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of Spg024940 vs. ExPASy TrEMBL
Match: A0A4Y7KC21 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_034128 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.1e-61
Identity = 138/185 (74.59%), Postives = 140/185 (75.68%), Query Frame = 0


Query: 15  MSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITA 74
           M+SKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITA
Sbjct: 1   MTSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 75  YIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSAL------- 134
           YIPGIGHN QEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR QGRSSAL       
Sbjct: 61  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 120

Query: 135 -----------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAV 170
                                  ISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAV
Sbjct: 121 SKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAV 176

[Close]

BLAST of Spg024940 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.8e-57
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           MEEGRRFSNEEK+PM+SKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRK
Sbjct: 17  MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 76

Query: 61  VSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIVRGTLDAVEVKDRP 120
           V+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIVRGTLDAV VKDR 
Sbjct: 77  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 136

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 137 QGRSSAL 143

[Close]

BLAST of Spg024940 vs. ExPASy TrEMBL
Match: A0A5H2Y3L6 (Ribosomal protein S7p/S5e family protein (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_1328S000100 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 6.5e-54
Identity = 126/194 (64.95%), Postives = 129/194 (66.49%), Query Frame = 0


Query: 35  SSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG 94
           +SGSKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG
Sbjct: 31  ASGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG 90

Query: 95  RVKDLPDVRYHIVRGTLDAVEVKDRPQGRSS----------------------------- 154
           RVKDLP VRYHIVRGTLDAV VKDR QGRSS                             
Sbjct: 91  RVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSYHETKDLLSKEILFGTIICPRSNIEIISE 150

Query: 155 ------------------------------ALISNPSRKGRETDTQFKVSKQNSILDLID 170
                                           ISNPSRK RETDTQFKVSKQNSILDLID
Sbjct: 151 NRSESNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLID 210

[Close]

BLAST of Spg024940 vs. ExPASy TrEMBL
Match: A0A6N2NH77 (Ribosomal_S7 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS516037 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.3e-53
Identity = 123/183 (67.21%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 1   MEEGRRFSNEEKNPMSSKELNEEPYEVKISSTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           ++EGR FS +EK PM+SKELNEEPYE         SGSKGDLSVNF TITPKKPNSALRK
Sbjct: 283 LDEGRSFSTDEKGPMTSKELNEEPYE---------SGSKGDLSVNFYTITPKKPNSALRK 342

Query: 61  VSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP--------DVRYHIVRGTLD 120
           V+RVRLTSGFEITAYIPGIGHN QEHSVVLVRG  ++  P        D ++  +    +
Sbjct: 343 VARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGEGLRIYPSRSESNSNDSKHFFLHYFGN 402

Query: 121 AVEVKDRPQGRSSALISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYG 176
               + +  G     ISNPSRK RETDTQFKVSKQNSIL+LIDTYRILWKAVFDESRMYG
Sbjct: 403 P---RTQSYGYGKYRISNPSRKRRETDTQFKVSKQNSILNLIDTYRILWKAVFDESRMYG 453

[Close]

BLAST of Spg024940 vs. ExPASy TrEMBL
Match: A0A4D6LVH2 (Ribosomal protein S7 OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g506 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.1e-52
Identity = 114/136 (83.82%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 34  LSSGSKGDLSVNFSTITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRG 93
           + SGSKGDLSVNFSTITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRG
Sbjct: 578 VKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG 637

Query: 94  GRVKDLPDVRYHIVRGTLDAVEVKDRPQGRSSALISNPSRKGRETDTQFKVSKQNSILDL 153
           GRVKDLP VRYHIVRGTLDAV VKDR QGRS   I   + KG +     KVSKQNSILD 
Sbjct: 638 GRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSRFPIL--AGKGGKRILNLKVSKQNSILDF 697

Query: 154 IDTYRILWKAVFDESR 170
           IDTYRILWKAVFDESR
Sbjct: 698 IDTYRILWKAVFDESR 711

[Close]

BLAST of Spg024940 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 148.3 bits (373), Expect = 6.1e-36
Identity = 74/84 (88.10%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 48  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIV 107
           TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVEVKDRPQGRSSALISNP 132
           RGTLDAV VKDR QGRS   +  P
Sbjct: 99  RGTLDAVGVKDRQQGRSKYGVKKP 122

[Close]

BLAST of Spg024940 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 148.3 bits (373), Expect = 6.1e-36
Identity = 74/84 (88.10%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 48  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIV 107
           TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVEVKDRPQGRSSALISNP 132
           RGTLDAV VKDR QGRS   +  P
Sbjct: 99  RGTLDAVGVKDRQQGRSKYGVKKP 122

[Close]

BLAST of Spg024940 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 148.3 bits (373), Expect = 6.1e-36
Identity = 74/84 (88.10%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 48  TITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHIV 107
           TITPKKPNSALRKV+RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP VRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVEVKDRPQGRSSALISNP 132
           RGTLDAV VKDR QGRS   +  P
Sbjct: 99  RGTLDAVGVKDRQQGRSKYGVKKP 122

[Close]

BLAST of Spg024940 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-20
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 47  STITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHI 106
           ST TPKKPNSA RK+++VRL++  +I A+IPG GHN QEHS VL+RGGRVKD P V+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 107 VRGTLDAVEVKDRPQGRS 125
           +RG  D + +  R +GRS
Sbjct: 98  IRGVKDLMGIPGRRRGRS 115

[Close]

BLAST of Spg024940 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-20
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 47  STITPKKPNSALRKVSRVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPDVRYHI 106
           ST TPKKPNSA RK+++VRL++  +I A+IPG GHN QEHS VL+RGGRVKD P V+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 107 VRGTLDAVEVKDRPQGRS 125
           +RG  D + +  R +GRS
Sbjct: 98  IRGVKDLMGIPGRRRGRS 115

The following BLAST results are available for this feature:

BLAST of Spg024940 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC88934.1	1.8e-66	75.65	hypothetical protein C5167_030630 [Papaver somniferum]	[more]
RZC70923.1	2.3e-61	74.59	hypothetical protein C5167_034128 [Papaver somniferum]	[more]
XP_022932068.1	5.9e-57	94.49	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
XP_038902483.1	9.4e-55	91.34	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_038896566.1	2.7e-54	91.34	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Spg024940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYN8	6.1e-41	86.00	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
A4QJX7	1.0e-35	81.72	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
Q1KXY0	3.8e-35	93.75	30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A...	[more]
Q332V3	3.8e-35	93.75	30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE...	[more]
Q0G9J5	3.8e-35	93.75	30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]

BLAST of Spg024940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y7KC21	1.1e-61	74.59	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_034128 PE=3 SV=1	[more]
A0A6J1F0L1	2.8e-57	94.49	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A5H2Y3L6	6.5e-54	64.95	Ribosomal protein S7p/S5e family protein (Fragment) OS=Prunus dulcis OX=3755 GN=...	[more]
A0A6N2NH77	3.3e-53	67.21	Ribosomal_S7 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS...	[more]
A0A4D6LVH2	2.1e-52	83.82	Ribosomal protein S7 OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g506 PE=3 SV=1	[more]

BLAST of Spg024940 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	6.1e-36	88.10	ribosomal protein S12A	[more]
ATCG01230.1	6.1e-36	88.10	ribosomal protein S12B	[more]
ATCG00905.1	6.1e-36	88.10	ribosomal protein S12C	[more]
AT2G07675.1	2.7e-20	58.97	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	2.7e-20	58.97	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 119..131 score: 37.29 coord: 86..103 score: 83.1 coord: 103..119 score: 59.15 coord: 67..86 score: 75.14 coord: 51..66 score: 85.59
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 42..122 e-value: 9.2E-28 score: 96.2
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 16..127
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 52..59
None	No IPR available	GENE3D	2.40.50.140		coord: 2..141 e-value: 1.2E-43 score: 149.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..140
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 16..127
IPR005679	Ribosomal protein S12, bacterial-type	TIGRFAM	TIGR00981	TIGR00981	coord: 34..125 e-value: 1.2E-43 score: 146.0
IPR005679	Ribosomal protein S12, bacterial-type	CDD	cd03368	Ribosomal_S12	coord: 48..119 e-value: 2.2767E-50 score: 156.14
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 44..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024940.1	Spg024940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome