Spg024893 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024893
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibosomal protein L37
Locationscaffold12: 7987904 .. 7988935 (+)
RNA-Seq ExpressionSpg024893
SyntenySpg024893
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTACTTCTCAGCCCTCTTTGGACGGAAGAAGAATCCAAAGGCTTCATCGTCGAATTCGACTAAATGGTAGTGGCGAACTTGCTTTGAATTCCTAAATCTCTTCTCTTTCTATATGAACGTTACTGAATTCGAAATTGAAGTGCGTTAATCGATTTGTTTGTTGATCGGTAAATTAGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGCCGTAGCTTCCACTTGCAGAAGAGTCGATGCGCCGCCTGTGCATTTCCGGCCGCCCGTAAGCGAAAATGTAAGTTCGCCTAATCAGTAGGTAATTTATTTTGAGTTTTTTTGCAATTGAATCTGTTATTTGTTGGGTTTAATTTGCTTCATCGAGTAGAAGTCATCATCATAGATCCTCCATTATCGACCTAGATAGCAGTAGATTCGTTATGGGTCTTCAATTTTGGTTTAGTTGCTCGTTTGTCTTATGGGGGTTTTGGATTTAGATAACTGGAGCGTTAAGGCGATCAGGAGGAAGACAACTGGAACTGGCCGGATGAGATACATGCGCCATGTTCCTCGCAGATTTAAGAGTGGTTTCAGAGAAGGTACTAATTTGCGTTGTATATTACTTGTATTTTCTTCTTATCAATATGATTATTGCGGCATTTTGTGATTTTGATTACATTTGGATTCTGTGATTAGGTACTCAAGCAGCGCCAAGGAGCAAAGGAGCAGCAGCATCAGCCTAAAACTTTGAAGGTTAATTGTGGCACAACTTTGGTACCCTATAGTAGCTTCTAGGAGGATTTTGTCATTTTTGGACCAGAATCTATATGAATTTTGTTTGATGATGTTATTGCCTTCAATACTGAAGCTCATTTTTATTCCTTACTATTTTGTTTATGGAATTTTTTATGATTGGATTCAGACCACTTTCACCTTTGGTTAATCTATGACTTGAGTTATATACTTCTAACCATTTTATGAGTTTTTACTGGTAGATATTATCACCCTGAAGGCTGG

mRNA sequence

ATGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGCCGTAGCTTCCACTTGCAGAAGAGTCGATGCGCCGCCTGTGCATTTCCGGCCGCCCGTAAGCGAAAATATAACTGGAGCGTTAAGGCGATCAGGAGGAAGACAACTGGAACTGGCCGGATGAGATACATGCGCCATGTTCCTCGCAGATTTAAGAGTGGTTTCAGAGAAGGTACTCAAGCAGCGCCAAGGAGCAAAGGAGCAGCAGCATCAGCCTAA

Coding sequence (CDS)

ATGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGCCGTAGCTTCCACTTGCAGAAGAGTCGATGCGCCGCCTGTGCATTTCCGGCCGCCCGTAAGCGAAAATATAACTGGAGCGTTAAGGCGATCAGGAGGAAGACAACTGGAACTGGCCGGATGAGATACATGCGCCATGTTCCTCGCAGATTTAAGAGTGGTTTCAGAGAAGGTACTCAAGCAGCGCCAAGGAGCAAAGGAGCAGCAGCATCAGCCTAA

Protein sequence

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA
Homology
[Close]
BLAST of Spg024893 vs. NCBI nr
Match: XP_022150495.1 (60S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022998691.1 60S ribosomal protein L37-3-like [Cucurbita maxima] >XP_023523625.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6606766.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.0 bits (476), Expect = 3.9e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGT+AAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of Spg024893 vs. NCBI nr
Match: XP_022955411.1 (60S ribosomal protein L37-3 [Cucurbita moschata] >XP_022979289.1 60S ribosomal protein L37-3 [Cucurbita maxima] >XP_023526471.1 60S ribosomal protein L37-3 [Cucurbita pepo subsp. pepo] >KAG6581895.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018329.1 60S ribosomal protein L37-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 8.6e-44
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 95

[Close]
BLAST of Spg024893 vs. NCBI nr
Match: XP_004141772.1 (60S ribosomal protein L37-3 [Cucumis sativus] >XP_008462159.1 PREDICTED: 60S ribosomal protein L37-3-like [Cucumis melo] >XP_038896143.1 60S ribosomal protein L37-3-like [Benincasa hispida] >KAA0059300.1 60S ribosomal protein L37-3 [Cucumis melo var. makuwa] >KGN45374.1 hypothetical protein Csa_016423 [Cucumis sativus] >TYK04028.1 60S ribosomal protein L37-3 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 8.6e-44
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPR+KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Spg024893 vs. NCBI nr
Match: XP_038902074.1 (60S ribosomal protein L37-3 [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 8.6e-44
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPRSKGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of Spg024893 vs. NCBI nr
Match: XP_022964011.1 (60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6593459.1 60S ribosomal protein L37-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.8 bits (473), Expect = 8.6e-44
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGT+AAPR+KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Spg024893 vs. ExPASy Swiss-Prot
Match: Q8LEM8 (60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.4e-42
Identity = 82/95 (86.32%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PRSK +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of Spg024893 vs. ExPASy Swiss-Prot
Match: Q43292 (60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 4.2e-41
Identity = 81/95 (85.26%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PR+KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of Spg024893 vs. ExPASy Swiss-Prot
Match: Q8LFH7 (60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.1e-41
Identity = 81/95 (85.26%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGTQA PR+K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]
BLAST of Spg024893 vs. ExPASy Swiss-Prot
Match: Q90YT1 (60S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-29
Identity = 65/95 (68.42%), Postives = 74/95 (77.89%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKRKYNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMR+M+ V RRF++GFREGT   PR    AAS+
Sbjct: 61 TGRMRHMKVVFRRFRNGFREGTVPKPRRAAVAASS 95

[Close]
BLAST of Spg024893 vs. ExPASy Swiss-Prot
Match: Q9VXX8 (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37a PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-29
Identity = 63/92 (68.48%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGT SFGKR NKTHTLC RCGR S+H+QKS CA C +PAA+ R YNWSVKA RRKTTG
Sbjct: 1  MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAA 93
          TGRM++++ V RRF++GFREGTQA P+   A+
Sbjct: 61 TGRMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92

[Close]
BLAST of Spg024893 vs. ExPASy TrEMBL
Match: A0A6J1KAY5 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111493277 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.9e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGT+AAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of Spg024893 vs. ExPASy TrEMBL
Match: A0A6J1D8M5 (Ribosomal protein L37 OS=Momordica charantia OX=3673 GN=LOC111018628 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.9e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGT+AAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of Spg024893 vs. ExPASy TrEMBL
Match: A0A6J1GAE3 (Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111452398 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.9e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGT+AAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of Spg024893 vs. ExPASy TrEMBL
Match: A0A5D3BYC5 (Ribosomal protein L37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002270 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.2e-44
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPR+KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Spg024893 vs. ExPASy TrEMBL
Match: A0A6J1IW96 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111479057 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.2e-44
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 95

[Close]
BLAST of Spg024893 vs. TAIR 10
Match: AT3G16080.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 170.6 bits (431), Expect = 5.9e-43
Identity = 82/95 (86.32%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PRSK +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of Spg024893 vs. TAIR 10
Match: AT1G52300.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-42
Identity = 81/95 (85.26%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PR+KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of Spg024893 vs. TAIR 10
Match: AT1G15250.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 167.5 bits (423), Expect = 5.0e-42
Identity = 81/95 (85.26%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGTQA PR+K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

The following BLAST results are available for this feature:
BLAST of Spg024893 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150495.13.9e-4497.8960S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal ... [more]
XP_022955411.18.6e-4497.8960S ribosomal protein L37-3 [Cucurbita moschata] >XP_022979289.1 60S ribosomal p... [more]
XP_004141772.18.6e-4496.8460S ribosomal protein L37-3 [Cucumis sativus] >XP_008462159.1 PREDICTED: 60S rib... [more]
XP_038902074.18.6e-4496.8460S ribosomal protein L37-3 [Benincasa hispida][more]
XP_022964011.18.6e-4496.8460S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S riboso... [more]
BLAST of Spg024893 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LEM88.4e-4286.3260S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1[more]
Q432924.2e-4185.2660S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2[more]
Q8LFH77.1e-4185.2660S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1[more]
Q90YT11.3e-2968.4260S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3[more]
Q9VXX81.6e-2968.48Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37... [more]
BLAST of Spg024893 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KAY51.9e-4497.89Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111493277 PE=3 SV=1[more]
A0A6J1D8M51.9e-4497.89Ribosomal protein L37 OS=Momordica charantia OX=3673 GN=LOC111018628 PE=3 SV=1[more]
A0A6J1GAE31.9e-4497.89Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111452398 PE=3 SV=1[more]
A0A5D3BYC54.2e-4496.84Ribosomal protein L37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold34... [more]
A0A6J1IW964.2e-4497.89Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111479057 PE=3 SV=1[more]
BLAST of Spg024893 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G16080.15.9e-4386.32Zinc-binding ribosomal protein family protein [more]
AT1G52300.12.9e-4285.26Zinc-binding ribosomal protein family protein [more]
AT1G15250.15.0e-4285.26Zinc-binding ribosomal protein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011331Ribosomal protein L37ae/L37eGENE3D2.20.25.30coord: 1..87
e-value: 5.6E-46
score: 156.7
IPR001569Ribosomal protein L37ePFAMPF01907Ribosomal_L37ecoord: 3..53
e-value: 4.6E-26
score: 90.7
IPR001569Ribosomal protein L37eHAMAPMF_00547Ribosomal_L37ecoord: 2..53
score: 16.240541
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..95
NoneNo IPR availablePANTHERPTHR1076860S RIBOSOMAL PROTEIN L37coord: 1..95
NoneNo IPR availablePANTHERPTHR10768:SF28RIBOSOMAL PROTEIN L37coord: 1..95
IPR018267Ribosomal protein L37e, conserved sitePROSITEPS01077RIBOSOMAL_L37Ecoord: 4..23
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024893.1Spg024893.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome