Spg024800 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024800
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic
Location	scaffold12: 13756344 .. 13760840 (-)
RNA-Seq Expression	Spg024800
Synteny	Spg024800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGCTAAGATGGACAATGGAGGGGCAAAGCTTTTGGGATCTGGATGTTTCAACGCCGAGAACTCTGGATGGGTCGGCCTCCCCTGTTCCCACTGGCTTACTTCCCTTGGGATTGTCCAGAGGCGTCAGGCTTTCCAGGGCTAAGCAGATCGATTTCATGCAGCGCTTCATGGCTGCACCTTTTGTCCCTTCTTATGCCCCTTCCCATGGCTTCTCTCTCCAGCGCGTCCTTACCATCCCCTTTTCCGACTCCGGGTAACTCAATTCTCTCTATTTTCTCTCTCTCTTTGTTTTTCCTATACCCTCACACTCACTTGTATTGATTTTCCATCGTATATGCCTTAAAAAGCACTGCAGGTCCGCCACTTTTCTAGGTCAGTTCAATTTGCAGAAGTTCATGTTCTCTCTTAAGAAATGTGGTTCCGGAGAGATGCCTCAGTCGGCGTCCTCATTGCTGCAACGCATTGGAAGGCACCTCTGCCAACGATCTTTATATGCCCTTGGTATCTCTTCTGATATCTTGTTAACTCCGGATGATTCTCTGTTGATCAGCTTCGACGGATATGGCGACAGTGAAGTACTTCGAACAAAAGCCGTGTTCCATCATAAGGCATGTATATCCGCGGTCCCCAATAGAAATTGTTAAATCAGTCTGCTTCTTGTATTCTATTTTTTATTTTTTAAATTTATGGCATCTCTTGATGTAGATTTTTATTTTCCTCGTTGCAGTTCCTACATCATGATCTGACAATGGAGGCACTTTCTCCAGGACTTTTTGTGGACAAATCTGGTAACTACTGGGATGTGCCTTCTTCATTAGTCATTGATGTAGGTTCTACTGCTTTTGGCTCGGGTCCAAGTTATCACTTGTCCATGCACCACAATGCCGGGTCTCCCTCACAATCTGGAAGTGAACAAACCCGTGCGGCCCCTTTCTGTCTGCTTCCTGGTCTTTCAATGAAGGCTGCTTTTTCCTTTAAGAAGAACATTGAAATCTGGAGAAGCAACGCCAAGAAGTTAAAGATGGTGCTACCGTATGACATTTTCCTATCAAATCCTCATGTTTCATTGTCAGGGATCATTGGTATGAATCCATACTGGTTATCCTTCAATCAAACTTCTTATTCTTTTTTTTAAAAAAACAAGAAACAAGTTCGAAGATACAAGCTCTGCAAGGGAGTAATAAACTAACAAAAGCAATACAAGACCGAAAGAAACTAAATTGCAATAATGATAAAACACTATAAAGGATATATAAATGCATTCCAACTTAGACAAATAGCTTGAAGTGAGAACCCCACGAACAACTTGGACTAACTAAGAATACCAAAATGAGCCCTTTAGACGGGAGAAGCTTCAAATTGATCAATCCAAGGATGATACTTGCTCTGATTTTTTTTTTTTCTCTAACCATAATTTCAAAAGAGCAACTTAGCCTCAGAATTTAAAAATGTTGGCCCATATAAGAGTTGAGAGAGGTACAACAGAAGACAAAAAAAAAAAAAAAAACTTGTAGATTGAAAAGTAAAAACAACTTGAACCAACCAAGTCTAGCTTAAGAGTAATTAAAAAAAATATGGTTGAGAGAATCTTCATCCCGGAGACATAAGATACAAACTGGTAGCAATATGCAATGAGATGGTTTCTTCTTCTGTAGAACGTCTGAAGTATTGAGATTTCCATTGAGCATAATCCACGAAATAATATTAATTCTTATATTCTTGTAGGACTCTTAGACTTCCACAAAGTTGAATACAACTCTCTCCAATGGTGAATAAGACAACAAATGATTAGTTAAAGATTTTACCAAAAAAATACATGGTGAATCCATAGACCACCGTCTATAATCACCAAGAATCACATATGAAATATTTAGTAACATTGTCTGAAAATCTTCAATCTCATCTTTCAATAGTCTTCGAAAAGAGAAATTCCAAGAACCAATTTGGATATCCTAATGGGTTCAAATAGAATCATTTTTTAAAGTTTTAAATTCATCATCAAGATTAAAAAGTAAAATCTCGCTAACCCTCCGGGATTAAAAGTTCCAACCTAAACCTCTTTGATTTTTTTTTTTTTGGGGGAAAAGCAATATATAACCCTAAACTTTGGGGTTGTACCAATTAAAACACTAAACTAATAATTGTATCAATTTAAACCCCCTGTTAGGATTTTGTTTTAAACCGGTTAATGAATAATTTTCACGTGTATAAAACTTCTTTAAATATAAGGATAAACATTAGATATAAATTTTGAAATCCAATGGATAGGAGTGGCTTTTCATTAATATGAGTGGTTTTTCATCTTCTCTTCTTCATCTACTTTTCCTCTATTTTTTTCTACTTATGTAGGAAGAATTATGTGATTTCTTGCTACTTTGGTAGGGATTTTGGGATAAGAATAATTTTATTAAGGTGATTTTGAGTTCTAATTATAAATCACTAAGGGAGGGTGTATTTGATCCACTTATGAAAGTTTAGGGTTTAAATTGATACAATTATTAGTTTTGGTTTTAAATGATACAATCCGAAAGTTCAGGAGTATAAATTGATTTTTTTTTCTTTTTATCTTATCTCAGTAGGTTAGGTGTTGGTGTACATAGAAAAATAATTTAAATGTTATGAGACCTTATATTTAGTCTCGACTTGACGAGGATCTGTTCTATAGGTTGTACTACTTTGTCCTTGAGTTCTAAAGACCATATATGTAGTGTAGTCAAATTCAATCACGATAATGAGTAGGGACTTGTTGAAGTTTTTTGATACATTGAGGATATATTGAAGTTTTTATAATATTAGGAGCAAAACGGTGGAAAGTTCAAGGACAAAGTAGCTGCAATTGCACCTGCAATTGCCAACTTGGCCAATGAAATGCAAGGATTTGACAAACTCAGAAATCATCATAGTCCATCCTTAACTTTTTCATGCTCAAAATTTTCTTTAAGATACTTCTGTTATTATACAGTTTTGCAGGTATGAAGCTGCAAGCAATTCCTTAGTAAATTAATATTTTGGCAATTTCTACTAATTTTTGTATCATCTCAATTGATCTTAAAAGGTGCTGTTGCTACTACCTACTTTGGAGACAATTCAGTTAGGTCAGCAGCACAGAACAGTCTTCAGGAATTTAAAGGACTTTACATGCAGACTTCTAGAATAAAATCTACTGTTTTTGCGGATGTATTCGCTTCCATTTCTTTTTCTGCTCAGTATGGGATGTTTCAAAGGCCATTTCTGGATCTTACCCGTGTTTCTGCACGTATGGATTTCCATTCTGGCTCCAAGTTCCTTTCAGGAGCCATGCTTTTGATAGAAGATCTTTCCAATTCCCGGCACCCAAGAACTGAATCTGTGAGAGCGACCTTGCCTAATGCTAGATTTTCCATTCAGCAACAGGTATGTTTGTCTTTCATTCAGCTGCTGAGTGTGTGGTCTAAGTCAACAGTAACAAAATGAAAAGAAAATAGAACAAATCTTGCTAAGCACATCTACTTCCTCGTATGCTAATCATGCTTTGCTTTTTGGATCTGTGAAGTTCTGATTCATATTTTTGGGAATTTTTTTGTGAAATTGTCCTCGAGTTGAACCTGTAATCAATAATTTAAGCTCTGAACAGTTGTTAGAACTTTTCCATGGTTGGAGAAAGTTTGAAAGAAAAATTATAATATAGTTTCAATTGAAAAGCCTCTTTTTTTTTTTTTTGGGAAAAATGGAAAAACCTTCGTTATAACCCTGCATTAAGCACATTGACTGGGAATGATGCATGATATGAATCTATGACTTGTTGTTTGGGACGGTTTCGTGAAAACATTGGCTGTGCAGATCGCTGGACCCATCAGCTTTAGAGCAGATTCAGGAGTTACAATAGATTTGAATGAACCATGGTGGGGTATACAAGTGGAGGAGCCTACATTTGCCTTGGAGCATGCGTTGCAGGTCCTTGGTTCAGCTAAAGCCATTGCTTGGTATTCACCAAAGCACAGAGAATTTATGGTAGAGCTCCGCTTCTACGAGAACTGAAGCCAAGGGTAGTTCATTTTTAGTTTCATTTTGGAGTCTTGGTGACGATGTTTCAACATATTTTCTTTCTTTGTGACACACGATCAACTTTTATCGTGTGTTAGACTCTGCAATTCTCTTCCATTTGTTTTGCCGACTGCGGTATATATATAATAACAATCTTTGGCAATCGGAAATCTTTTTTTATTTTTTTATTTTTTCTTTAAAGAATTTGTTTAGCAGACTCCTTTAATGGTATTTAGTAAAAGAGTGCTAAATCCTAGAAAACAGCAGAGAAGATGGTGTGGATGCTGTGATATTGTATGTATTCCTGAAATCAATACAATCAGGACATAAAAAGGGCAGTATCCAAAAGGGGGAAGATACGTTGCAGCCCACAATACGTATAATGCAAAACAGAAACAATTATATCATACATTACCATTTTATCTTACCATGACCCTTACCATTTTATCTTTCATTTAATATTATCG

mRNA sequence

ATGCACCACAATGCCGGGTCTCCCTCACAATCTGGAAGTGAACAAACCCGTGCGGCCCCTTTCTGTCTGCTTCCTGGTCTTTCAATGAAGGCTGCTTTTTCCTTTAAGAAGAACATTGAAATCTGGAGAAGCAACGCCAAGAAGTTAAAGATGGTGCTACCTTTTGCAGGTGCTGTTGCTACTACCTACTTTGGAGACAATTCAGTTAGGTCAGCAGCACAGAACAGTCTTCAGGAATTTAAAGGACTTTACATGCAGACTTCTAGAATAAAATCTACTGTTTTTGCGGATGTATTCGCTTCCATTTCTTTTTCTGCTCAGTATGGGATGTTTCAAAGGCCATTTCTGGATCTTACCCGTGTTTCTGCACGTATGGATTTCCATTCTGGCTCCAAGTTCCTTTCAGGAGCCATGCTTTTGATAGAAGATCTTTCCAATTCCCGGCACCCAAGAACTGAATCTGTGAGAGCGACCTTGCCTAATGCTAGATTTTCCATTCAGCAACAGATCGCTGGACCCATCAGCTTTAGAGCAGATTCAGGAGTTACAATAGATTTGAATGAACCATGGTGGGGTATACAAGTGGAGGAGCCTACATTTGCCTTGGAGCATGCGTTGCAGGTCCTTGGTTCAGCTAAAGCCATTGCTTGGTATTCACCAAAGCACAGAGAATTTATGGTAGAGCTCCGCTTCTACGAGAACTGA

Coding sequence (CDS)

ATGCACCACAATGCCGGGTCTCCCTCACAATCTGGAAGTGAACAAACCCGTGCGGCCCCTTTCTGTCTGCTTCCTGGTCTTTCAATGAAGGCTGCTTTTTCCTTTAAGAAGAACATTGAAATCTGGAGAAGCAACGCCAAGAAGTTAAAGATGGTGCTACCTTTTGCAGGTGCTGTTGCTACTACCTACTTTGGAGACAATTCAGTTAGGTCAGCAGCACAGAACAGTCTTCAGGAATTTAAAGGACTTTACATGCAGACTTCTAGAATAAAATCTACTGTTTTTGCGGATGTATTCGCTTCCATTTCTTTTTCTGCTCAGTATGGGATGTTTCAAAGGCCATTTCTGGATCTTACCCGTGTTTCTGCACGTATGGATTTCCATTCTGGCTCCAAGTTCCTTTCAGGAGCCATGCTTTTGATAGAAGATCTTTCCAATTCCCGGCACCCAAGAACTGAATCTGTGAGAGCGACCTTGCCTAATGCTAGATTTTCCATTCAGCAACAGATCGCTGGACCCATCAGCTTTAGAGCAGATTCAGGAGTTACAATAGATTTGAATGAACCATGGTGGGGTATACAAGTGGAGGAGCCTACATTTGCCTTGGAGCATGCGTTGCAGGTCCTTGGTTCAGCTAAAGCCATTGCTTGGTATTCACCAAAGCACAGAGAATTTATGGTAGAGCTCCGCTTCTACGAGAACTGA

Protein sequence

MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPFAGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSAQYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSIQQQIAGPISFRADSGVTIDLNEPWWGIQVEEPTFALEHALQVLGSAKAIAWYSPKHREFMVELRFYEN

Homology

[Close]

BLAST of Spg024800 vs. NCBI nr
Match: XP_038875869.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Benincasa hispida] >XP_038875870.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 392.1 bits (1006), Expect = 3.3e-105
Identity = 200/248 (80.65%), Postives = 218/248 (87.90%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           MH N GSPSQSGSEQ R++P CLLPGLS KAAF+FKKN+EIWRSNAKKLKMV P+     
Sbjct: 223 MHQNTGSPSQSGSEQARSSPLCLLPGLSAKAAFAFKKNLEIWRSNAKKLKMVQPYDIFLS 282

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     GAVATTYFGDNS+RSAAQ+SL EFKGLY+QTSRI+STVFADVFASISFSA
Sbjct: 283 TPHVSLSGIIGAVATTYFGDNSIRSAAQDSLPEFKGLYLQTSRIRSTVFADVFASISFSA 342

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYGMFQR +LDLT  SARMDFHSGSKFLSGAMLLI+DLSNSRHPRTESVRATLP+ARFS+
Sbjct: 343 QYGMFQRKYLDLTCFSARMDFHSGSKFLSGAMLLIDDLSNSRHPRTESVRATLPSARFSL 402

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWG-IQVEEPTFALEHALQVLGSAKAIAWYSPKHREF 234
           QQQIAGP+SFRADSGV IDLN+  WG + V+EPTFALE+ALQVLGSAKAIAWYSPKHREF
Sbjct: 403 QQQIAGPVSFRADSGVAIDLNKAGWGLLGVDEPTFALEYALQVLGSAKAIAWYSPKHREF 462

[Close]

BLAST of Spg024800 vs. NCBI nr
Match: XP_022158716.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Momordica charantia])

HSP 1 Score: 386.0 bits (990), Expect = 2.4e-103
Identity = 199/248 (80.24%), Postives = 215/248 (86.69%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           MHHNAGSPSQSG+E+T A PFCLLPGLS+KAAFSFK N +IWRSNAKKLKMV P+     
Sbjct: 220 MHHNAGSPSQSGTEKTGAVPFCLLPGLSLKAAFSFKHNFQIWRSNAKKLKMVQPYDIFLS 279

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     GAVATTYFGDNSVRSAAQ+SLQEFKGL MQTS+I+STV ADVFASISFSA
Sbjct: 280 NPHVSLSGIIGAVATTYFGDNSVRSAAQDSLQEFKGLNMQTSKIRSTVLADVFASISFSA 339

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYGMFQR FLDLTR SA MDFHSGSKF+SGA LLIEDLSNS  PRTE+V+A LP+ARFS+
Sbjct: 340 QYGMFQRGFLDLTRFSASMDFHSGSKFISGAKLLIEDLSNSGKPRTETVKAILPDARFSL 399

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWGIQVEEPTFALEHALQVLGSAKAIAWYSPKHREFM 235
           QQQIAGPISFRADS VTIDLN+  WG+QVEEPTFALE+ALQVLGSAKAIAWYSPK REFM
Sbjct: 400 QQQIAGPISFRADSRVTIDLNKAGWGMQVEEPTFALEYALQVLGSAKAIAWYSPKPREFM 459

[Close]

BLAST of Spg024800 vs. NCBI nr
Match: XP_023548884.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023548885.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023548886.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023548887.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 5.3e-103
Identity = 199/249 (79.92%), Postives = 213/249 (85.54%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           MHHNAGSPSQSGSEQT  APFCLLPGLS KAAF+ KKN+EIWRSNAKKLK V P+     
Sbjct: 223 MHHNAGSPSQSGSEQTCMAPFCLLPGLSAKAAFALKKNLEIWRSNAKKLKRVQPYDIFLS 282

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     GAVAT+YFGD S  SAA+ SLQEFKGLYMQTSRI+STVFADVFASISFSA
Sbjct: 283 NPHVSLSGIIGAVATSYFGDISAGSAAEGSLQEFKGLYMQTSRIRSTVFADVFASISFSA 342

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYGMFQR FLDLTR S R DFHSGSKFLSGAMLLIEDLSNS+HPRTESV+ATLPNARFS 
Sbjct: 343 QYGMFQRNFLDLTRFSGRFDFHSGSKFLSGAMLLIEDLSNSQHPRTESVKATLPNARFSF 402

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWG-IQVEEPTFALEHALQVLGSAKAIAWYSPKHREF 235
           QQQIAGP+SFRAD+GV IDL++  WG +QVEEPTFALE+AL VLGSAKAIAWYSPK REF
Sbjct: 403 QQQIAGPVSFRADTGVAIDLSKAGWGSLQVEEPTFALEYALHVLGSAKAIAWYSPKQREF 462

[Close]

BLAST of Spg024800 vs. NCBI nr
Match: XP_022959177.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita moschata] >XP_022959178.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita moschata] >XP_022959179.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita moschata] >XP_022959180.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita moschata])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 198/249 (79.52%), Postives = 212/249 (85.14%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           MHHNAGSPSQSGSEQT  APFCLLPGLS KAAF+ KKN+EIWRSNAKKLK V P+     
Sbjct: 223 MHHNAGSPSQSGSEQTCMAPFCLLPGLSAKAAFALKKNLEIWRSNAKKLKRVQPYDIFLA 282

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     GAVAT+YFGD S  SAA+ SLQEF+GLYMQTSRI+STVFADVFASISFSA
Sbjct: 283 NPHVSLSGIIGAVATSYFGDISAGSAAEGSLQEFRGLYMQTSRIRSTVFADVFASISFSA 342

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYGMFQR FLDLTR S R DFHSGSKFLSGAMLLIEDLSNS+HPRTESV+ATLPNARFS 
Sbjct: 343 QYGMFQRNFLDLTRFSGRFDFHSGSKFLSGAMLLIEDLSNSQHPRTESVKATLPNARFSF 402

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWG-IQVEEPTFALEHALQVLGSAKAIAWYSPKHREF 235
           QQQIAGP+SFRADSGV IDL++  WG +QVEEPTFALE+AL  LGSAKAIAWYSPK REF
Sbjct: 403 QQQIAGPVSFRADSGVAIDLSKAGWGSLQVEEPTFALEYALYALGSAKAIAWYSPKQREF 462

[Close]

BLAST of Spg024800 vs. NCBI nr
Match: KAG6575159.1 (Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013716.1 Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379.0 bits (972), Expect = 2.9e-101
Identity = 196/249 (78.71%), Postives = 211/249 (84.74%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           MHHNAGSPS+SGSEQT  APFCLLPGLS KAAF+ KKN+EIWRSNAKKLK V P+     
Sbjct: 223 MHHNAGSPSRSGSEQTCMAPFCLLPGLSAKAAFALKKNLEIWRSNAKKLKRVQPYDIFLS 282

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     GAVAT+YFGD S  SAA+ SLQEFKGLY+Q SRI+STVFADVFASISFSA
Sbjct: 283 NPRVSLSGIIGAVATSYFGDISAGSAAEGSLQEFKGLYVQASRIRSTVFADVFASISFSA 342

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYGMFQR FLDLTR S R DFHSGSKFLSGAMLLIEDLSNS+HPRTESV+ATLPNARFS 
Sbjct: 343 QYGMFQRNFLDLTRFSGRFDFHSGSKFLSGAMLLIEDLSNSQHPRTESVKATLPNARFSF 402

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWG-IQVEEPTFALEHALQVLGSAKAIAWYSPKHREF 235
           QQQIAGP+SFRADSGV IDL++  WG +QVEEPTFALE+AL  LGSAKAIAWYSPK REF
Sbjct: 403 QQQIAGPVSFRADSGVAIDLSKEGWGSLQVEEPTFALEYALYALGSAKAIAWYSPKQREF 462

[Close]

BLAST of Spg024800 vs. ExPASy Swiss-Prot
Match: Q9M903 (Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TGD4 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-50
Identity = 106/247 (42.91%), Postives = 146/247 (59.11%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           +HHN+GSP +  S+     P  LLPGLS+K+A S++ N+++WR    KL+   P+     
Sbjct: 232 LHHNSGSPKKLHSDTMEVPPPSLLPGLSLKSAVSYRTNMDLWRGTTPKLETCKPYDVFLS 291

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     G+V T  FG+NS+RS  +N  +   G  +    + S   AD     S +A
Sbjct: 292 SPHVAVSGIIGSVMTAAFGENSIRSKFENDSEGVGGFSLHFPSVNSGFMADALGRASLTA 351

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYG FQ+ F DLTR  AR+DF  G +FL+GA  + +DL NSR P  E+ +   P    S+
Sbjct: 352 QYGNFQKFFFDLTRFHARLDFPHGLRFLTGATSVAQDLLNSRQPSLEAFQKICPEVLVSL 411

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWGIQVEEPTFALEHALQVLGSAKAIAWYSPKHREFM 234
           QQQI GP SF+ +SG+ IDL      + V++  FA+E+ALQVL SAKA+  YSPK  EFM
Sbjct: 412 QQQIVGPFSFKVESGIEIDLRNGANPVTVDKTVFAIEYALQVLLSAKAVVSYSPKQNEFM 471

[Close]

BLAST of Spg024800 vs. ExPASy TrEMBL
Match: A0A6J1E1S3 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111025174 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.2e-103
Identity = 199/248 (80.24%), Postives = 215/248 (86.69%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           MHHNAGSPSQSG+E+T A PFCLLPGLS+KAAFSFK N +IWRSNAKKLKMV P+     
Sbjct: 220 MHHNAGSPSQSGTEKTGAVPFCLLPGLSLKAAFSFKHNFQIWRSNAKKLKMVQPYDIFLS 279

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     GAVATTYFGDNSVRSAAQ+SLQEFKGL MQTS+I+STV ADVFASISFSA
Sbjct: 280 NPHVSLSGIIGAVATTYFGDNSVRSAAQDSLQEFKGLNMQTSKIRSTVLADVFASISFSA 339

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYGMFQR FLDLTR SA MDFHSGSKF+SGA LLIEDLSNS  PRTE+V+A LP+ARFS+
Sbjct: 340 QYGMFQRGFLDLTRFSASMDFHSGSKFISGAKLLIEDLSNSGKPRTETVKAILPDARFSL 399

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWGIQVEEPTFALEHALQVLGSAKAIAWYSPKHREFM 235
           QQQIAGPISFRADS VTIDLN+  WG+QVEEPTFALE+ALQVLGSAKAIAWYSPK REFM
Sbjct: 400 QQQIAGPISFRADSRVTIDLNKAGWGMQVEEPTFALEYALQVLGSAKAIAWYSPKPREFM 459

[Close]

BLAST of Spg024800 vs. ExPASy TrEMBL
Match: A0A6J1H3U0 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111460245 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.8e-103
Identity = 198/249 (79.52%), Postives = 212/249 (85.14%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           MHHNAGSPSQSGSEQT  APFCLLPGLS KAAF+ KKN+EIWRSNAKKLK V P+     
Sbjct: 223 MHHNAGSPSQSGSEQTCMAPFCLLPGLSAKAAFALKKNLEIWRSNAKKLKRVQPYDIFLA 282

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     GAVAT+YFGD S  SAA+ SLQEF+GLYMQTSRI+STVFADVFASISFSA
Sbjct: 283 NPHVSLSGIIGAVATSYFGDISAGSAAEGSLQEFRGLYMQTSRIRSTVFADVFASISFSA 342

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYGMFQR FLDLTR S R DFHSGSKFLSGAMLLIEDLSNS+HPRTESV+ATLPNARFS 
Sbjct: 343 QYGMFQRNFLDLTRFSGRFDFHSGSKFLSGAMLLIEDLSNSQHPRTESVKATLPNARFSF 402

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWG-IQVEEPTFALEHALQVLGSAKAIAWYSPKHREF 235
           QQQIAGP+SFRADSGV IDL++  WG +QVEEPTFALE+AL  LGSAKAIAWYSPK REF
Sbjct: 403 QQQIAGPVSFRADSGVAIDLSKAGWGSLQVEEPTFALEYALYALGSAKAIAWYSPKQREF 462

[Close]

BLAST of Spg024800 vs. ExPASy TrEMBL
Match: A0A6J1KW75 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111499258 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.7e-100
Identity = 195/249 (78.31%), Postives = 210/249 (84.34%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           MHHNAGSPSQSGSEQT  APFCLLPGLS KAAF+ KKN+EIWRSNAKKLK V P+     
Sbjct: 223 MHHNAGSPSQSGSEQTCMAPFCLLPGLSAKAAFALKKNLEIWRSNAKKLKRVQPYDIFLS 282

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     GAVAT+YF D SV SAA+ SLQEFKGL+MQTSRI+STVFADVFASISFSA
Sbjct: 283 NPHVSLSGIIGAVATSYFRDISVGSAAEGSLQEFKGLHMQTSRIRSTVFADVFASISFSA 342

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYGMFQ  FLDLTR S R DFHSGSKFLSGAMLLIEDLSNS+HPRTESV+ATLPNARFS 
Sbjct: 343 QYGMFQSNFLDLTRFSGRFDFHSGSKFLSGAMLLIEDLSNSQHPRTESVKATLPNARFSF 402

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWG-IQVEEPTFALEHALQVLGSAKAIAWYSPKHREF 235
           QQQIAGP+SFRAD+GV IDL++  WG +QVEEPTFALE+AL  LGSAKAIAWYSPK  EF
Sbjct: 403 QQQIAGPVSFRADTGVAIDLSKAGWGSLQVEEPTFALEYALYALGSAKAIAWYSPKQTEF 462

[Close]

BLAST of Spg024800 vs. ExPASy TrEMBL
Match: A0A0A0K824 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G001740 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 5.0e-99
Identity = 188/248 (75.81%), Postives = 212/248 (85.48%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           MH NAG PSQ GSE T +APFCLLPGLS KAAF+FKKN EIWRSNAKKLKMV P+     
Sbjct: 222 MHQNAGFPSQLGSEPTHSAPFCLLPGLSAKAAFAFKKNFEIWRSNAKKLKMVQPYDIFLS 281

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     GAVAT+YFGD+  RSAAQ+SL++FKG YM++SRI+STVFAD+F SISFSA
Sbjct: 282 TPHVSLSAIIGAVATSYFGDDLARSAAQDSLEKFKGFYMKSSRIRSTVFADLFTSISFSA 341

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYGMFQ+ +LDLTR SA MDFHSGSKFLSG+MLLI+DLSNSRHP+TESV+ATLPNARFSI
Sbjct: 342 QYGMFQKKYLDLTRFSACMDFHSGSKFLSGSMLLIDDLSNSRHPKTESVKATLPNARFSI 401

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWG-IQVEEPTFALEHALQVLGSAKAIAWYSPKHREF 234
           QQQIAGP+SFRAD+GV IDLN+  W  ++VEEPTFALE+AL VLGSAKAIAWYSPKHREF
Sbjct: 402 QQQIAGPVSFRADTGVAIDLNKAGWDLLRVEEPTFALEYALHVLGSAKAIAWYSPKHREF 461

[Close]

BLAST of Spg024800 vs. ExPASy TrEMBL
Match: A0A5D3BY40 (Protein TRIGALACTOSYLDIACYLGLYCEROL 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00780 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.5e-99
Identity = 188/248 (75.81%), Postives = 209/248 (84.27%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           MH N G PS  GSE T +APFCL PGLS KAAF+FKKN EIWRSNAKKLKMV P+     
Sbjct: 551 MHQNTGFPSPLGSEPTHSAPFCLFPGLSAKAAFAFKKNFEIWRSNAKKLKMVQPYDIFLS 610

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     GAVAT+YFGD+ VRSAAQ SL EFKG YMQTSRI+ST+FAD+F SISFSA
Sbjct: 611 TPHVSLSAIIGAVATSYFGDDLVRSAAQGSLAEFKGFYMQTSRIRSTIFADLFTSISFSA 670

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYGMFQ+ +LDLTR SA MDFHSGSKFLSG+MLLI+DLSNSRHP+TE+V+ATLPNARFSI
Sbjct: 671 QYGMFQKKYLDLTRFSACMDFHSGSKFLSGSMLLIDDLSNSRHPKTEAVKATLPNARFSI 730

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWG-IQVEEPTFALEHALQVLGSAKAIAWYSPKHREF 234
           QQQIAGP+SFRADSGV IDLN+  W  ++V+EPTFALE+ALQVLGSAKAIAWYSPKHREF
Sbjct: 731 QQQIAGPVSFRADSGVAIDLNKAGWDLLRVDEPTFALEYALQVLGSAKAIAWYSPKHREF 790

[Close]

BLAST of Spg024800 vs. TAIR 10
Match: AT3G06960.1 (pigment defective 320 )

HSP 1 Score: 201.4 bits (511), Expect = 7.7e-52
Identity = 106/247 (42.91%), Postives = 146/247 (59.11%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF----- 60
           +HHN+GSP +  S+     P  LLPGLS+K+A S++ N+++WR    KL+   P+     
Sbjct: 232 LHHNSGSPKKLHSDTMEVPPPSLLPGLSLKSAVSYRTNMDLWRGTTPKLETCKPYDVFLS 291

Query: 61  ---------AGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSA 120
                     G+V T  FG+NS+RS  +N  +   G  +    + S   AD     S +A
Sbjct: 292 SPHVAVSGIIGSVMTAAFGENSIRSKFENDSEGVGGFSLHFPSVNSGFMADALGRASLTA 351

Query: 121 QYGMFQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSI 180
           QYG FQ+ F DLTR  AR+DF  G +FL+GA  + +DL NSR P  E+ +   P    S+
Sbjct: 352 QYGNFQKFFFDLTRFHARLDFPHGLRFLTGATSVAQDLLNSRQPSLEAFQKICPEVLVSL 411

Query: 181 QQQIAGPISFRADSGVTIDLNEPWWGIQVEEPTFALEHALQVLGSAKAIAWYSPKHREFM 234
           QQQI GP SF+ +SG+ IDL      + V++  FA+E+ALQVL SAKA+  YSPK  EFM
Sbjct: 412 QQQIVGPFSFKVESGIEIDLRNGANPVTVDKTVFAIEYALQVLLSAKAVVSYSPKQNEFM 471

[Close]

BLAST of Spg024800 vs. TAIR 10
Match: AT2G44640.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3769 (InterPro:IPR022244); BEST Arabidopsis thaliana protein match is: pigment defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 108.2 bits (269), Expect = 8.9e-24
Identity = 73/243 (30.04%), Postives = 125/243 (51.44%), Query Frame = 0


Query: 1   MHHNAGSP---SQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKK-------LK 60
           +H + G+P   + +G E    AP  L+PGL  KAA S+K N ++WR   K+         
Sbjct: 223 LHKSRGNPQPVNAAGVESGSDAPTSLMPGLCAKAAVSYKVNRDLWRPQEKEGNTEEEDKP 282

Query: 61  MVLPFAGAVATTYFGDNSVRSAAQNSLQEFKGLYMQTSRIKSTVFADVFASISFSAQYGM 120
           + LP+   +   +   + +  ++  +    +G+ +   + +S + ADVF S  ++ Q G 
Sbjct: 283 VFLPYDLRLKEPHAAISGIVGSSLAAWITGRGMLVNGKK-RSPISADVFGSACYTFQKGR 342

Query: 121 FQRPFLDLTRVSARMDFHSGSKFLSGAMLLIEDLSNSRHPRTESVRATLPNARFSIQQQI 180
           F + + DLTRV AR+D       L  A  L + L ++    ++    + P      QQQ+
Sbjct: 343 FSKLYGDLTRVDARVD-------LPSAFALAKKLFHASSNNSDDTLWS-PRLNLIFQQQV 402

Query: 181 AGPISFRADSGVTIDLNEPWWGIQVEEPTFALEHALQVLGSAKAIAWYSPKHREFMVELR 234
           AGPI F+ DS   +         ++E+  ++L ++L++L S K +AWYSPK +E M+ELR
Sbjct: 403 AGPIVFKVDSQFQVG------AARMEDVIYSLNYSLRLLESGKIVAWYSPKRKEGMIELR 450

[Close]

BLAST of Spg024800 vs. TAIR 10
Match: AT3G06960.2 (pigment defective 320 )

HSP 1 Score: 55.8 bits (133), Expect = 5.3e-08
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 1   MHHNAGSPSQSGSEQTRAAPFCLLPGLSMKAAFSFKKNIEIWRSNAKKLKMVLPF 56
           +HHN+GSP +  S+     P  LLPGLS+K+A S++ N+++WR    KL+   P+
Sbjct: 232 LHHNSGSPKKLHSDTMEVPPPSLLPGLSLKSAVSYRTNMDLWRGTTPKLETCKPY 286

The following BLAST results are available for this feature:

BLAST of Spg024800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875869.1	3.3e-105	80.65	protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Benincasa hispida] >XP_038...	[more]
XP_022158716.1	2.4e-103	80.24	protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Momordica charantia]	[more]
XP_023548884.1	5.3e-103	79.92	protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita pepo subsp. pepo...	[more]
XP_022959177.1	2.0e-102	79.52	protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucurbita moschata] >XP_02...	[more]
KAG6575159.1	2.9e-101	78.71	Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic, partial [Cucurbita argyros...	[more]

BLAST of Spg024800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M903	1.1e-50	42.91	Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Arabidopsis thaliana OX=...	[more]

BLAST of Spg024800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1S3	1.2e-103	80.24	protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Momordica charantia OX=3...	[more]
A0A6J1H3U0	9.8e-103	79.52	protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Cucurbita moschata OX=36...	[more]
A0A6J1KW75	2.7e-100	78.31	protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Cucurbita maxima OX=3661...	[more]
A0A0A0K824	5.0e-99	75.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G001740 PE=4 SV=1	[more]
A0A5D3BY40	6.5e-99	75.81	Protein TRIGALACTOSYLDIACYLGLYCEROL 4 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Spg024800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06960.1	7.7e-52	42.91	pigment defective 320	[more]
AT2G44640.1	8.9e-24	30.04	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G06960.2	5.3e-08	41.82	pigment defective 320	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34954:SF4	PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 4, CHLOROPLASTIC	coord: 1..233
IPR044160	Protein TRIGALACTOSYLDIACYLGLYCEROL 4-like	PANTHER	PTHR34954	EXPRESSED PROTEIN	coord: 1..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024800.1	Spg024800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034196	acylglycerol transport
biological_process	GO:1990052	ER to chloroplast lipid transport
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0070300	phosphatidic acid binding
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding