Spg024760 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024760
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold12: 7781354 .. 7785847 (+)
RNA-Seq ExpressionSpg024760
SyntenySpg024760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTGGGTGTGTGTGCGGAGCGTGACGCGGAAATCACGTGTGGGTGTGAGTGCGGAGCGTGACGCGGAAATCACGTGTGAGAGGCACTGCGCATGGCGCGAGATAATACATGTGTTGGGTGGGTTTGCGGAGCGTGACGCGGAAATCACGTGTGGGTTGTGAGTGCGGAGCGTGACGCGGAAATCACGTGAGAGTGAGCGGGCATGGCGCAGAAACCATGTGGGGGTGCATAGCATGATGCGTGGATTCATGTTGTCGTCCCATTTTGCATGAAACATGTGTTGTAATTGTTTTCGTGCTTAAGAGTATGTTGAGTTGTTTATCGCTTTTCAAGCATGGCGTGTGTGGATAGCATGTTATTGTGATTGTGTTTTGTTTGGTGGCTCACCGGGTGTGAGGTACTTACCAGTACTGTGGTTGTACTGATACCCCTCCCCTTTCTTCCCCCCAACAATTTCAGATTATGCAGGTGATGAGTTTTATGTGCCCGGTGATGCAGACGAGGAGATTCACGAGGGATGACCACATGGGTCCTTTTACTTGTTTATTTCCTTTTTGGTAGATAGGATGGTCGTCTGTTCTTTAATTGTTGATAGGTTGATTTGTTTAGCCGGTAGCTAGGTTGGTGTAGTTTTTGTTTCTGGTTAATGAGCATGTTTAGATTTCATGTTTCTCGTTAGGTTGTGAATATGTTATTGTTTAATAAAGACGACCTGTTTTAGAAAATTAAGGATATGCTTGATCGGGTAGAGTTAGGTTCTGTTGTTGGTTGGAGATGCGAGATCTGACTCGTATCCTGTTTGTAGTTGTTCTGTGGAAGTTGTGGAGCTGAATGGATCAATATAGAAGTGTTGTTGAGTTTAACAGGTGTTTTACAATTTTTGGTTTCGTTCTATGTATGCCGTTATGCTGCCGAAATTTTTTCGGAGCTCTCGGTTTGTTGAATAGGATTTGGTAATGTCATTAGGTTAGTTAATAATAAAACCTGGGGCGTTACAAAATGCTTATCGGTTTTTTGGTTTCAGATCCCCACCTCATGTCGCTTCAACTTGCCGCGTCCGTCGACCTTCCCTTGACCGAGAGCTCGCTGGATCTGCATGGTAGGTTTTTGGAGCATGGTGAGGAGGTGGGAACAACAGGTAAGATTTCTTGTCCCTTGGCCGGCCGATGATGAGTAACGCATGTTATATAAATATACATCCAAAATTTTTTTGCCTATGATTTGGATGTTCAAACGATGCAAAGCAAGCCTTTTTGTTTTTCTCCAATTTTTACGTGTTTTGATCTCTATCTCTTGGTTCTGTGCATAATTTTTTTTTGGTTCCTTATCATCTCTGTGTAAATGTTATGTTCTCTCCATTTTTCTTTGTTGTTCGTTTCGATCTCTGTCTCTTGTTCTATTCTATCCAATTTTTTAATTTCTTTAATTTTTTTTATGGTCCCTCCTTATGGTTGTCTCGTGGTTCTGTTCTATCCAATTTTTTTTAATTTTTAATTTTTTTTATTTATGGTTCCTCCTTATCGGTATGTGTTGGTTTTGTTCTATCCAATTTTTTTTATTTTTTTTACGATTCCTTCTCATTGTTGTCTCTTGGTTCTGTTTTATCCATTATTTTTATATGGTTTTTCTGACTTGTGTTGTTCAAATTTGGTTGTTCAAGTGTTCTGTCCTCTCTACTTTTGGTTGTTTAATCTGGACTTAATTTTCTTCCTATTCTTTGCACAATGTTTGAAAGTCATGCACCTGAGGTCGGTCCCTATTAGGAATGTTACTGTGTACTGTTGTGTTATATTATGAATATTCAGATGTTCTTGTAACTAGATTAGTTGTCATCAATTTCATTTGTAACTGACTTAGTTGTGATAAATGATGCATTGTGTAGGTAGGTTGCATTTATTTAGTTGTGATAAATGAAGCATTATGGGTAGGTTGCACTTATGAAGTAAATGGTTAATGATATCTACCATGTCCTTTTTTATAAATAGGTCAGGTAGATTACATTGAATTGCATTAATTAAATGCAATCTACCTTATCTCTTTTTAAAAGAGGAAGTACATTGCATTTATGTCAATCTACCTTATCACGTTTTTATGAACTTCAACTACCAATTTCTCTTCTTTTCAAAAAAAAAACTACCAATTTCTCTACTTATCTATTTATACCACACCACTTTTCCCTTCCCAGCTTGAGGAAAGTCTCCACTGCTCTGAGATCCCTCTGCATTGGTGAGTTATTTTCCAACCATTCCTTCTTTTGTCTTAAGATCTCATGTTTAGTCAGTCATTTCTCTCCCTCACCTATTCTTTTGTTATGTTCTACCAGTATAGACAAGGACGTGACCAATCTCCCGCCATCGGTGTTTGCATTCGTGTACACCTATTTCATATCAAGGTGAGTTTTCCTAATGCTTGTAGTGTTTGCTTTCATTTTAAATAAGTTACATTTCCTAATGCTTGTAGTCAATCATTCCTCTCTCTCACCTATTCTAATGTTTATGTGCCTATCTTTAACCACCATGTCCATTTTCTTTCCCTCGGTACAGGGTCCGATAGTAAACACGTTTTGTAAGAGGTTCGTTGTTGGTTTTATTTCTGAGTTTTGTTAATGTAAACTTATTTCTTGTCTACACTCAATGACTATTTTCTTCATGTATAATGTTGATTCATGTGTGGTTTGTGTATTACATTTTTGTTTCTTCCATACTAGTCACTTTTGTCACACAACTATTCTTTAATATGATATGATTTACATGATTGAATATTTGGCTTGCTGTTTTAAACAAATTTGGATTTGTGGATTCTGTTTTGAAAGCTCAAATCTATATAATATGCTAAATATGTGTTGATATTATTAACAAAATAGGGCATAGAAATTTGAATGAGTCATGTACTTGGTAAGACTAAAATTTATAATACAAGTTCAACGCTATATCACACTAATACTCAGTACCAAACACACAAAGAAGAAAAAAAATGTAAGGTATATAAAATAAGCCAATTTTCTCTTTGGTTCCTTTATACTTGATTTTGTTAGTTTCATCTTAAAATTTTCAATTTTTCTTGTAAATTAACAAAAACGATATTATTAGTATAAATATGAAATCGAAAAATACATTAGAAAGAAAGATATCATGTACAACCTTACTGGAAAAAAAAATTACATCAAATTACATATAAAATTCTAAAAACAATTCGTCAGTGTGTTTCAAAAAGAAGAAAAACATCAGTGGTTACTTTGGAAAATAAATTGATTAGAAAGAACGTTCTTTTGTTTTCTGTTTTGCAAAGGTATGAGTGCTAAATAAAAAGACCAATCATCTTTTGGCAAAGTTATCAAAGTTAGTAAAATATGTTCTACTTACATACAAAGAAACATCTTCATCTTATCTTTAATATGCTATACAAAACAAAGAATTTGTCAAATTTAATTTTTAAATGTAACAAAGTTTTTGACTATGTCATTTTTTATATTACAAGATGTTTAAACAATTTTTTAAGTATAACAAGATGTTGAGACTTTTTTTTTCTTTCAGTTTCGTATGAGTTTCAAACCTTTTTTTAAATACAAGAAGATTCTCAATTTGTAAAATTTTATATAACAAGAGTAGCAAACCTTTTTTTCTTAAATACAACTAGAATTTCAATCTTTTAAAAAAAAATAGAAGAAAATTTTCAATTTTCGTTTTTTTAATATAACAAGACTTGCAAACGTTTTTTTTTCTTTAAATACAACAAGAATTTCAATTTAAAAAAAAAATAGAACAAGCTCTTCCTTCATTATGATGATCTGGCAATTATTTTTGGAAAGGACCGGGCCATTGGGGCAAGCGTGGAGACTCCTACAATGGCGTCAAATGTTACCGATCAAATGGAGGATGATGTGCAGTTGGGATCACAAGATTATTATGTCCTAGAACCAGAACCATTCAATGCAACAGGAGACATGTTTGAATATGAGCTCCCAGACACACTGACCAGTAGGACCAGGCCAGCGGGGACATCATCACAAGGAAGTAAGAGGAAACAATCTTCCTTTCACATAGAAATGATTGAAGTGGTCAAGACTGTGACGCCCGAGGTTAGGAGGGGTACATGAATGAACTGGGATCACATCCGAATGAGAGGGATCCTGAGGACATGAAAGTATGGTCAAGATAAGCTTAAAAGAATTGATAGATACAACCTATACCAACAAGGTGCACCTTCTTTCTCAATGGCTCAATCATAGGAACTTTGAAGTTAAATGTGTTTGGCTTGGAGAAGTTCTATGTTGGGTGACCTCCTGAGAATTTTCCTAGGAAGCATGTGAGTGAGGATAAAGCATGCTAAAAGGACCCCGTGTTGGTTTGTGGGGACAATCTTCACTCTTAGAAACAGTGGAACGGGAGGCTGCACGACGCAAGTTAGTGGTTGATCAACTTGAAGAAATGGCAGAATTCGATGAGAGGGATAAAGTTCAACTTCTAGGTATGTTGCTTGCTGATATCTAG

mRNA sequence

ATGTCGCTTCAACTTGCCGCGTCCGTCGACCTTCCCTTGACCGAGAGCTCGCTGGATCTGCATGGTAGGTTTTTGGAGCATGGTGAGGAGGTGGGAACAACAGATGTTCTTTATAGACAAGGACGTGACCAATCTCCCGCCATCGGTGTTTGCATTCGTGTACACCTATTTCATATCAAGGACCGGGCCATTGGGGCAAGCGTGGAGACTCCTACAATGGCGTCAAATGTTACCGATCAAATGGAGGATGATGTGCAGTTGGGATCACAAGATTATTATGTCCTAGAACCAGAACCATTCAATGCAACAGGAGACATGTTTGAATATGAGCTCCCAGACACACTGACCAGTAGGACCAGGCCAGCGGGGACATCATCACAAGGAAAATTCGATGAGAGGGATAAAGTTCAACTTCTAGGTATGTTGCTTGCTGATATCTAG

Coding sequence (CDS)

ATGTCGCTTCAACTTGCCGCGTCCGTCGACCTTCCCTTGACCGAGAGCTCGCTGGATCTGCATGGTAGGTTTTTGGAGCATGGTGAGGAGGTGGGAACAACAGATGTTCTTTATAGACAAGGACGTGACCAATCTCCCGCCATCGGTGTTTGCATTCGTGTACACCTATTTCATATCAAGGACCGGGCCATTGGGGCAAGCGTGGAGACTCCTACAATGGCGTCAAATGTTACCGATCAAATGGAGGATGATGTGCAGTTGGGATCACAAGATTATTATGTCCTAGAACCAGAACCATTCAATGCAACAGGAGACATGTTTGAATATGAGCTCCCAGACACACTGACCAGTAGGACCAGGCCAGCGGGGACATCATCACAAGGAAAATTCGATGAGAGGGATAAAGTTCAACTTCTAGGTATGTTGCTTGCTGATATCTAG

Protein sequence

MSLQLAASVDLPLTESSLDLHGRFLEHGEEVGTTDVLYRQGRDQSPAIGVCIRVHLFHIKDRAIGASVETPTMASNVTDQMEDDVQLGSQDYYVLEPEPFNATGDMFEYELPDTLTSRTRPAGTSSQGKFDERDKVQLLGMLLADI
Homology
[Close]
BLAST of Spg024760 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-04
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 60  KDRAIGASVETPT-MASNVTDQMEDDVQLGSQDYYVLEPEPFNATGDMFEYELPDTLTSR 119
           KDRA GA+++ P  MAS+    + +D    +QD+Y+ +P  FN T D  E +LP+T TS+
Sbjct: 50  KDRATGANLDCPVDMASSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSK 109

Query: 120 TRPAGTSSQGKFDER 134
               GTSS G   +R
Sbjct: 110 P-TIGTSSGGSKRKR 123

[Close]
BLAST of Spg024760 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 60  KDRAIGASVETPT-MASNVTDQMEDDVQLGSQDYYVLEPEPFNATGDMFEYELPDTLTSR 119
           KDRA GA+++ P  MAS+    + +D    +QD+Y+ +P  FN T D  E +LP+T TS+
Sbjct: 50  KDRATGANLDCPVDMASSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSK 109

Query: 120 TRPAGTSSQGKFDER 134
               GTSS G   +R
Sbjct: 110 P-TIGTSSGGSKRKR 123

The following BLAST results are available for this feature:
BLAST of Spg024760 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158565.16.0e-0441.33uncharacterized protein LOC111025018 [Momordica charantia][more]
BLAST of Spg024760 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DW732.9e-0441.33uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
BLAST of Spg024760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024760.1Spg024760.1mRNA