Spg024757 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024757
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold12: 12991265 .. 12999319 (-)
RNA-Seq Expression	Spg024757
Synteny	Spg024757

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACGACGACGGACGGCGAGGCGAACGGCAGCAGAGGGAAAAATGACGGAGAGAGAACAAAGAGCTCGAGAGGGGGCTGTCGAAGTCAAGAGAGAGAGGCGAAATGAGAAGAGGGAAAAAGTAAGGGCTTTTTTGCCCAGTTTTTTGTCGACGCCGTTAGTAACGGCGTCGGCAAAAATGGCCTCTCTCGACGCCGTCAGAGAGAGAGGTAGTTTCTCTCGACGCCGTTTTTCAGTGCGTCGAGAGAGACCATTTCTGCCGACGCCGTCACTAATGGCATCGGCAAAGGGCAAGGACTGAAATTAAGTGTTTTTGTTTTAGGGTTTTTTTCGTCCAGGTTTCTTTCGACGCCATCTTGACGACATCGAGAGAAATGTCGTCTCTCTCGACGCTGTTTTTAAGTGCGTCGAGAGAGATTATTTATGCCGACGTTGTCACTCACGGCGTCGGCAAAGGGCGAAGATTGAAATAAGTGTTTTTATTTTAGGATTTTTTCGTCTAGGTTTCTCTCGACACCGTCAAGATAACGTCAGCAGAAACGGTATCTCTCTTGACGCCGTCTTGACATCGTCGAGAGAGTTGTCATTTCTCTCGACGCCATCTTGACGGCGTCGAGAGAGACGACATTTCTCTCGACGCCGTCAAGATGGCGTCGAGAGAGAGTCATCCCACCATGTTTCTCTCGATGTGATTTTTTTGGCGTCGGGAGAAATAGGTTCTCGCGACGCCATCTGCTGGTGTCGAGAAAGAGTTTGTCGGCAAAACCATTTTTTCTTGTAGTGAATGAAGCCCAAGCCCATGTCCATGGAGAACTCTATAAATAGGGGAGCTTTCCTTCATTTTGGAGGGGCCAGAAGTTGGAAATCTCAGAGAAGAACTCAGAGAGAATTCAGAACTCAGAATATTCGAAGACTTCCAGAAGATCAAAAAGACTCCTTGAAGCTCACGAAGGCCTCAAGACCACTTCAATCTCAAGAATAAGCTGCAAAGCCCTTGAGACGACTTCAACTTCAAGAACAAGTTGCAAAGCCCTTGAGACGACTTCAACCTCAAGAACAAGCTGCAAAGCCCTTGAGACGACTTCAACCTCAAGAACAAGTTACAAAGTCCTTGAGACGAATTCAACCTCAAGAATAAGCTGCAAAGCCCTTGAGACGACTTCAAACTTGAGAACAAACGTTCCATCCCTCGAGTGAAACACACACACACAAGAGAGAGAATCAGAGGATTGTGTATTAAAGATTGTACTACTACACCCACAAACATCAATACAACTACAATATTTATTCCACGTGTCTCCATCTTTGAAGTTACGTGTGAACAAATTAGCACGCCCGGTGAGACGATCTCTACCTCTCATCTCTTTCTCTCATCCCAAGATCCAACTAAAGAGGTGGCACCAAAGAAAGCTTCTGCGAAGGTTACAACATCGAGCGACTCTTACACAGGACTTGTCACCCGTAGTCGTTCTAAAGGAATTGAAATCAAGGAGGATCAAACACCTCTCGTTGTTGCAAGCAGGATTTCGAAACTGATTGAGGAATCGTCCAAAGACAAGTTTGCTATCAAGGACAACCCATTATTCGACACATTCACTCCAACCTCTGAGCAGTTGAAGGACACACCAAATCCTAATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGGATGACAGAGATGGAAAGAAAACTCAACCTCCTAATGAAGGCAATTGAGGAAAGGGATCACAAGATTGCCTATTTGAAGAATCAACTGCAAAATCAAGAGGTTGCTGAATCTAGCCAGACCCCTTCTGCAAGAAAGGATGATAAGAGGAAGACTATCATCCATGAGGACCAGCTGCAATACTCGGCTCCAGTTGCCTCTCTATCTATCCAACAACTGCAGGACATAATCACAAACTGTATTAGAGCTCAGTACGGTGGACCTACTCAAGACTCCCTCTTGTATTCCAAACCTTATACTAAAAGGTATGGGTGTTCGTCGGCTAGCCGGAGTCCGTTTTGGACGAAAACCGACGCCGACAACCGACCTATCGGTTTTCGGTCAGTCGGTGATGCATACTTTTGGAATGGTTCTTGAAACCGACCGACCAAATACACGGTCGGTCGGTCGATTTGGTCAGTTTTACGATTTTGATGGAGGAGGGAAGTTTGAAGCACAACGAAAGGAGAAAAGACGAAGAATGAGAGAGAAAGAGAAGAGAGAGAAGAGAGATCGAGGAACAGAGAAAGAGAGAGAGGGAACCGAAGGGAGCCGAGCCGAATGATGAAGATACGACGTGAACGATGAAGAAGATGGTCGAATGGTGAGGAACAAAGAGAGAGAGAGTCGAATGGTGAGGAAGAGAGAAAGAAAAAGAGAAAAAGAAAGAAACAAATGAGAGAAAAAAAGATGAAGAAGAAAAGGAAGGAGAAAAGAAAGAGAGAAAGAAATCTGGAAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAAAAGTGAGTTGGAGAAAAGAGAAGATGGAAAGAGAGATGGAATAAAAAAATAATAAATTCAAAAAAGTAATGATTACCTTTTTTGAAAATGACTACATAGCATTAAATGTGTGTAGTGTACTTTTTTTTAAAAAACAGTGTACTCTTCCTTTAAAAACCGTGTACTCTTCCTCTTTTTTTTTTTTTTTAAAAAAAAACCATGTACTCTTCTTCTAATAAAGGGTGACACACACACACACACACACATATATATATATATATATATATATTTAATAAAGCGGTTAGTCGGTCAGTTTTCTTTATTTTTTGGTGGACCAACCGACCGACAGTCGGTTTTTTCAATGGACCAAATCGACTTCGACCGAATATGGTGCAAAACCGACCGATCGACGTCGGTTCGGTCGGTTTCGGCCGGTCGGGTCGGTTTTCGGTCAAGTTTTGAACACCCCTACTATGAGGATTGATAACTTGAGAATGCCTATTGGGTATCAACCACCAAAGTTTTAGCAGTTTGATGGAAAGGGCAACCCTAAACAACATATTGCCCACTTCGTCGAGACATGCGAGAACGCCAGTACTCAAGGAGACCTATTAGTCAAGCAGTTTGTTCGAACACTTAAAGGAAATGCCTTTAACTAGTACACTGATCTAGAACCTGAGTCAATCGACAGTTGGGAGGAATTCAAAAGAGAGTTCTTGAATCGCTTCTACAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACAAAAAGGTGAACTCGTTGTTAACTACATAAATCGTTGGAGAGCCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTTTCTACTGTTAAGATGTGCATTCAAGGCATGCATTGGGAACTCCTCTACATCCTTCAAAGTATAAAGCCCCGCACCTTTGAAGAACTAGCAACTCGTGCCCACGATATGGAGCTAAGTATTGCTAGTTAAGAAAACCAAGACCTTTTACTTTCTAACTTGAAGATAGAAGGAAACAACGTCGAAGTGACTACAAAAGAATCTATGGCTGTAAACACAATTCTTCTCACGTCATCTTCAAAAGAAAAGCGACAAGAAAATGGAACACGTCGCTTAACTTTAAAGGAAAGACAGAAGAAAATTTATCCTTTTCCCTGATTCTGACATCCCTAACATGTTGGAACAACTACTGAAAGCGCAACTGATAAGGCTTCCTAAGTGTAAACAACCGGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATTGAGTTATTAGTCATCCAGTGGAAAGATGCTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTAAGGAAGAAAAAATTGAGTTTGACCTTTAATGAGGTAGCTCAATCAAATCTTTCTGCAATAAAAAAGAACAAGCATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACTTCAACAATTGGTGATGTTGAATTAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGCAAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTTTGAGAAGGGTGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCATTCAACTACTCGTCCTTCGGTGTTCCAAAGAATGAGTATAGTTGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTTGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTACTGTCCTGTCACGTATGAAAAGGAAGTTTTCTGTTCTCATAAATACAGAAAGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACCAATTCTACAAGTGAAGGATCTGATTTGGACCATGATGAAGATAAGAGCTTTTAAAATGTAAAAGCTTCTTATCACAAGAGCCTAAACTGCATGATGCTCCCAGCCCACACGAGCTTGAAAGGTGAGTGCAAAAAAATCATGAACTACGTTATGACTTGATCCCTGTTCTTCAAGGGTACGTAGGCAGTTTAAAGAAAACTTTAAGTTCAATCTCTGCAAAAAAAAAAGTGCAACAAATATTGAAGCACGACAATACAAATTGAAGAAACTAATCATTGTTGGAGGCAACACAACAAATTGAAGTTGTGCACCGTTGTGAATGTGAAGTTATGAGTTGGATGAATAAAAGAAGGCTTCATTCCTCCAAATTCGATGTCTCGCTCCCCTGAAGTTCAGTGTTCCCTTTTTCTTCAAGTTCGAAGGTTCACACACTTCGCTACACTGCTTTGCTACTGTCTCTTCTCCAAGTTCAAAGGTAGCTTCGCACGCTACGTTGCTTCGCTGCTATTCCTTCGCCAAGTTCAAAGGTTCACACGCTGTATGCTGCTTCACTGTTGTTCCTTCTTCAAGTTCGAAGGTTTGCACGTTGTTATGTTGCTTCGTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGGTTGTTTCGCTGCAGTTCTTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCACTATAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGTTTCGCTGCAGTTTCTTCTCTCCAATTTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGTAACTCCTTCTCCAATTTTGAAGGTTCTCACACTGCTTTGCTGCAGTTCTTTCTCCAATTTCGAAGGTTCTCACGCTGCTTTGCTGCAGTTCCTTCTCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCTGCTTCGCTGCAATTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCTTCACTGTAGTTCCTTCCTCAAAATTCGAAGGTTCTCATGCTGCTTCACTGCTTGTTCCTTCTCCAAGTTCGAAGGTTCTAACGTTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGTTGCTTCGCTGTAGTTCCTTCTCCAAGTTCAAAGGTTCTCACGCTGCTTCGCTGCAGGTGATAGGACCTAAATAGTCCTATTTTATCGCCTCTAATCTAAGCTTGTTAGAGTTATTTTATGTTTTACTTGTCCTATTTGCAGGATCTTTGAGCTTAGGCATGTCGGGAGTCGATCACGCTAATTTGGTGTTAATTCGAGCCAATTACGAAGTTTTGGAGCCATCTCGGTGTCTTAGATGGCGAGGAGGTGAAAAGACCCAATTGTGCTGAAGCGGGCCTGAAGAATGACACCAAGAGCCAAAGATTGAAGTCCCATATCGAGAAAAAACGAGACAAGATCGAGAAAATAAACAGCAAGGCAGGGATCAGGGACGGCGTCGAGACGCCAACGCGATTTTCATCTGGAATGTAAAGTTCGCAGCGTCGAGACGCTGCCCTTGGTGTCTCTACTCCAGAGAGTTTTCTATAAATACGTAGCCTCGGTTTAGTCCGCCGTGAGGTTAGAATTTTGGTCCTTTTACGATTTCTTTGCCTCTTTTACGTTTCAGTACTGTTGTAGACCTTTTTAGGTCATATTTTATGGATTCTTTCATGTCTATCCATGTTTTTACTTCATCTATGAATAGCTAATCGTATTTAGATCGTTGGATTGGGTTTATGCTTTGATTTCTAATAAGATTGGTTGAGTTTTCTGGAATTTACTTACTGTTCTTGCTATCTTTTCATTCAGTTTTGCATGTTATCCCGTTTAAACCAATACATGAGGCTAGTCTATTAGGATTGACGACCCTATGTGATTACCGCTTGTGTATTCAATTAGTTATTTTTAGATAGCCACTAGGTTGAGACAAGCCACTCTCTATGCGAGACGACCCTTGATAGGCCTAGGATGCATGTTAAAGGTTGTAGGAATTAGATTTGAATTCTTTTCGAATTTAGTTAATACAATTCTGGACCCACGATCCCAAAACGACTACTTTAAATAGGTAATTGTAAAATTGCTTAATCTAAAACTAGTTAGATATAACTTAGTGACAGTTGCGAGGTCTCGGATGGTTGCTATTTTATGTATGAGGGGTGACGAGCGATAAAGAACATATTATTAATCTTGTTAATTGCAAAATTCACGGTTAGCAAGTTAATTAGCACAGCTTAGTGTAGGGGGGTCCTCCAAGTAACCCAAAAGCCAACCAGAGTAATGAAATCAGTCTAAAAATAATTATTAGAGAAAACTAGGAAGCCAATCAAAATAGAATCAAGCATAAGATATCCCAATCCAACGATCCCTTCCATGTTATTGATTTCCACCTTATTTCTCTTCTGCATGCTTTATTTTACTTCTTTTAAATTCAACATTAATTTATTTCTGTTTGTCCTTCTTTCCAAAAATCCCCCTGTTTTATAAGCGCAAAATTCTATAGTTACTAGGTCCACTTCTCTGTGTTCGACCCCGACCACTATTTCTACAAAATAGTTGTAGTGTCGTGGATTATAAATTTTATTTGGCTCGGACCTTCGATAAGTCCCGTCAGCAGCTCCTTCCTCAAGTTCAAAGGTTCTTTGCTGCTCCGCTGAGGTTCTCATTTTTTAAGTTACGAAGGTTGTTCTCCCTACTGCTAAGGTTCTGCCTGAATCTGAGGATGATCACTTCTCAAGGAAGGACGCGAGGGGGTAAGTGATCAGACTAAAATAATGCCTGAATCAGGGTTTGATCACTCCCCAAGGAAGGATGTGAGGAGGCAAGTGGTCAGACTGGAATTCCACCTGAACCAGGGTTTGACCACTTTCCAAGGAAGAATGTGAAGGGGCAAGTGGTCAAACTGAAATTCCGCCTGAACCAGGGTTTGACCACTTCCCAAGGAAGAACGTGAGGGGGCAAGTGGTCAGACTGAAATTCCGTCTGAACTAGGGTTTCACCACTTCCCAAAGAAGGATGCAAGGGGGCAAGTGATCAGACTGAAATTTTTCCTGAATCAGGATTTGATCACTTCCCAAGGAAGAATGCGAGGGGGCAAGTGGTCAGACTAAAATTTCGCCTGAACCAGGGTTTGACTATTTCCCAAAGAAGGATGCAAGGGGGCAAGTGATCAGACTGAAATTCCGCTTGAATCAGGGTTTGATCATTTCCCAAGGAAGAATATGAGGGGGCAAGTGGTCGTACTGAAATTCCGCCTAAACCAAGGTTTGACCACTTCCCAAAAAAGGATGCAAGGAGGCACGTGATCAGACTGGAATTCTGCCTGAATCAGGGTTTGATCACTTCCCAAGGAAGAATATGAGGGAGCAAGTGGTCAGACTGAAATTCTGCCTAAACTAGGGTTTGGCCACTTCCCAAAGAATGATGCAAGGGGACAAGTGATCAGACTGAAATTCCGCCTGAATCAGGGTTTAATCACTTCCCAAGGAAGAATGTGA

mRNA sequence

ATGCGACGACGACGGACGGCGAGGCGAACGGCAGCAGAGGGAAAAATGACGGAGAGAGAACAAAGAGCTCGAGAGGGGGCTGTCGAAGTCAAGAGAGAGAGGCGAAATGAGAAGAGGGAAAAAGTAAGGGCTTTTTTGCCCAGTTTTTTGTCGACGCCGTTAGTAACGGCGTCGGCAAAAATGGCCTCTCTCGACGCCGTCAGAGAGAGAGGAATTGAAATCAAGGAGGATCAAACACCTCTCGTTGTTGCAAGCAGGATTTCGAAACTGATTGAGGAATCGTCCAAAGACAAGTTTGCTATCAAGGACAACCCATTATTCGACACATTCACTCCAACCTCTGAGCAGTTGAAGGACACACCAAATCCTAATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGGATGACAGAGATGGAAAGAAAACTCAACCTCCTAATGAAGGCAATTGAGGAAAGGGATCACAAGATTGCCTATTTGAAGAATCAACTGCAAAATCAAGAGGAAAAAGCAAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTTTGAGAAGGGTGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCATTCAACTACTCGTCCTTCGGTGTTCCAAAGAATGAGTATAGTTGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTACTGTCCTGTCACGTATGAAAAGGAAGTTTTCTGTTCTCATAAATACAGAAAGTTCCTTGAAGCTTCGCACGCTACGTTGCTTCGCTGCTATTCCTTCGCCAAGTTCAAAGGTTCACACGCTGTATGCTGCTTCACTGTTGTTCCTTCTTCAAGTTCGAAGGTTTGCACGTTGTTATGTTGCTTCGTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGGTTGTTTCGCTGCAGTTCTTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCACTATAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGTTTCGCTGCAGTTTCTTCTCTCCAATTTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGTAACTCCTTCTCCAATTTTGAAGGTTCTCACACTGCTTTGCTGCAGTTCTTTCTCCAATTTCGAAGGTTCTCACGCTGCTTTGCTGCAGTTCCTTCTCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCTGCTTCGCTGCAATTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCTTCACTGTAGTTCCTTCCTCAAAATTCGAAGGTTCTCATGCTGCTTCACTGCTTGTTCCTTCTCCAAGTTCGAAGGTTCTAACGTTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGTTGCTTCGCTGTAGTTCCTTCTCCAAGTTCAAAGGATCTTTGAGCTTAGGCATGTCGGGAGTCGATCACGCTAATTTGGTGTTAATTCGAGCCAATTACGAAGTTTTGGAGCCATCTCGGTGTCTTAGATGGCGAGGAGTTTTGCATGTTATCCCGTTTAAACCAATACATGAGGCTAGTCTATTAGGATTGACGACCCTATGTGATTACCGCTTGTTTACGAAGGTTGTTCTCCCTACTGCTAAGGTTCTGCCTGAATCTGAGGATGATCACTTCTCAAGGAAGGACGCGAGGGGGGTTTCACCACTTCCCAAAGAAGGATGCAAGGGGGCAAGTGATCAGACTGAAATTTTTCCTGAATCAGGATTTGATCACTTCCCAAGGAAGAATGCGAGGGGGCAAGTGGAAGAATATGAGGGAGCAAGTGGTCAGACTGAAATTCTGCCTAAACTAGGGTTTGGCCACTTCCCAAAGAATGATGCAAGGGGACAAGTGATCAGACTGAAATTCCGCCTGAATCAGGGTTTAATCACTTCCCAAGGAAGAATGTGA

Coding sequence (CDS)

ATGCGACGACGACGGACGGCGAGGCGAACGGCAGCAGAGGGAAAAATGACGGAGAGAGAACAAAGAGCTCGAGAGGGGGCTGTCGAAGTCAAGAGAGAGAGGCGAAATGAGAAGAGGGAAAAAGTAAGGGCTTTTTTGCCCAGTTTTTTGTCGACGCCGTTAGTAACGGCGTCGGCAAAAATGGCCTCTCTCGACGCCGTCAGAGAGAGAGGAATTGAAATCAAGGAGGATCAAACACCTCTCGTTGTTGCAAGCAGGATTTCGAAACTGATTGAGGAATCGTCCAAAGACAAGTTTGCTATCAAGGACAACCCATTATTCGACACATTCACTCCAACCTCTGAGCAGTTGAAGGACACACCAAATCCTAATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGGATGACAGAGATGGAAAGAAAACTCAACCTCCTAATGAAGGCAATTGAGGAAAGGGATCACAAGATTGCCTATTTGAAGAATCAACTGCAAAATCAAGAGGAAAAAGCAAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTTTGAGAAGGGTGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCATTCAACTACTCGTCCTTCGGTGTTCCAAAGAATGAGTATAGTTGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTACTGTCCTGTCACGTATGAAAAGGAAGTTTTCTGTTCTCATAAATACAGAAAGTTCCTTGAAGCTTCGCACGCTACGTTGCTTCGCTGCTATTCCTTCGCCAAGTTCAAAGGTTCACACGCTGTATGCTGCTTCACTGTTGTTCCTTCTTCAAGTTCGAAGGTTTGCACGTTGTTATGTTGCTTCGTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGGTTGTTTCGCTGCAGTTCTTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCACTATAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGTTTCGCTGCAGTTTCTTCTCTCCAATTTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGTAACTCCTTCTCCAATTTTGAAGGTTCTCACACTGCTTTGCTGCAGTTCTTTCTCCAATTTCGAAGGTTCTCACGCTGCTTTGCTGCAGTTCCTTCTCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCTGCTTCGCTGCAATTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCTTCACTGTAGTTCCTTCCTCAAAATTCGAAGGTTCTCATGCTGCTTCACTGCTTGTTCCTTCTCCAAGTTCGAAGGTTCTAACGTTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGTTGCTTCGCTGTAGTTCCTTCTCCAAGTTCAAAGGATCTTTGAGCTTAGGCATGTCGGGAGTCGATCACGCTAATTTGGTGTTAATTCGAGCCAATTACGAAGTTTTGGAGCCATCTCGGTGTCTTAGATGGCGAGGAGTTTTGCATGTTATCCCGTTTAAACCAATACATGAGGCTAGTCTATTAGGATTGACGACCCTATGTGATTACCGCTTGTTTACGAAGGTTGTTCTCCCTACTGCTAAGGTTCTGCCTGAATCTGAGGATGATCACTTCTCAAGGAAGGACGCGAGGGGGGTTTCACCACTTCCCAAAGAAGGATGCAAGGGGGCAAGTGATCAGACTGAAATTTTTCCTGAATCAGGATTTGATCACTTCCCAAGGAAGAATGCGAGGGGGCAAGTGGAAGAATATGAGGGAGCAAGTGGTCAGACTGAAATTCTGCCTAAACTAGGGTTTGGCCACTTCCCAAAGAATGATGCAAGGGGACAAGTGATCAGACTGAAATTCCGCCTGAATCAGGGTTTAATCACTTCCCAAGGAAGAATGTGA

Protein sequence

MRRRRTARRTAAEGKMTEREQRAREGAVEVKRERRNEKREKVRAFLPSFLSTPLVTASAKMASLDAVRERGIEIKEDQTPLVVASRISKLIEESSKDKFAIKDNPLFDTFTPTSEQLKDTPNPNVMSVMMADVDQDERMTEMERKLNLLMKAIEERDHKIAYLKNQLQNQEEKANLATSYCIDVEEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRLNDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLINTESSLKLRTLRCFAAIPSPSSKVHTLYAASLLFLLQVRRFARCYVASLLFLLQVRRFSGCFAAVLSLQVRRFSRCFTIVPSLQVRRFSRCFAAVSSLQFRRFSRCFTAVPSLQVRRFSRCFVVTPSPILKVLTLLCCSSFSNFEGSHAALLQFLLSAAVPSSKFEGSHAASLQFLLQVRRFSRYLFLLQVRRFSRCFTVVPSSKFEGSHAASLLVPSPSSKVLTLLRCSSFSPSSKVLTLLRCSSFSKFKGSLSLGMSGVDHANLVLIRANYEVLEPSRCLRWRGVLHVIPFKPIHEASLLGLTTLCDYRLFTKVVLPTAKVLPESEDDHFSRKDARGVSPLPKEGCKGASDQTEIFPESGFDHFPRKNARGQVEEYEGASGQTEILPKLGFGHFPKNDARGQVIRLKFRLNQGLITSQGRM

Homology

[Close]

BLAST of Spg024757 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-18
Identity = 65/128 (50.78%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 185 EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL--- 244
           EEVDN  + +QRTSVFDRIK  TTR SVFQR+S+   EEENQC MST+TR SAF+RL   
Sbjct: 371 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMSTYTRTSAFKRLSIS 430

Query: 245 ------------------NDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLIN 292
                             NDQ QR++ +L+ K F E + D K+ S V SR+KRK S+ IN
Sbjct: 431 RSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIYSRVPSRIKRKLSIDIN 490

[Close]

BLAST of Spg024757 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 7.1e-18
Identity = 65/128 (50.78%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 185 EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL--- 244
           EEVDN  + +QRTSVFDRIK  TTR SVFQR+S+   EEENQC  ST+ R SAF+RL   
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 245 ------------------NDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLIN 292
                             NDQ QR++ +L+ K F E + D K+ S V SRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

[Close]

BLAST of Spg024757 vs. NCBI nr
Match: KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 7.1e-18
Identity = 67/125 (53.60%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 185 EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL--- 244
           EEVDN  + +QRTSVFDRIK  TTR SVFQR+SI   EEENQC  ST TR SAF+ L   
Sbjct: 463 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSIS 522

Query: 245 ------------------NDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLIN 289
                             NDQ QR++ +L+VK F E + D K+ S V SRMKRK SV IN
Sbjct: 523 TSKKDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHSRVPSRMKRKLSVDIN 582

[Close]

BLAST of Spg024757 vs. NCBI nr
Match: KAA0025725.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-17
Identity = 64/128 (50.00%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 185 EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL--- 244
           EEVDN  + +QRTSVFDRIK  TTR S FQR+S+   EEENQC  ST+ R SAF+RL   
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSAFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 245 ------------------NDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLIN 292
                             NDQ QR++ +L+ K F E + D K++S V SRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIRSRVSSRMKRKLSVGIN 239

[Close]

BLAST of Spg024757 vs. NCBI nr
Match: TYK19591.1 (hypothetical protein E5676_scaffold1274G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-17
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 185 EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL--- 244
           +EVDN  K +QRTSVFDRIK S TR  VFQR+S+   EEENQC MST+TR SAF++L   
Sbjct: 61  KEVDNSNKNKQRTSVFDRIKPSNTRSLVFQRLSMTMKEEENQCQMSTYTRTSAFKKLSIS 120

Query: 245 ------------------NDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLIN 288
                             N+Q QR++ +L+VK F E ++D ++ S V SRMKRK SV+IN
Sbjct: 121 TSKKDQPSTFAFNCLKMTNNQQQRQMKSLKVKPFHEENNDDEIHSHVSSRMKRKLSVVIN 180

[Close]

BLAST of Spg024757 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.1e-19
Identity = 65/128 (50.78%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 185 EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL--- 244
           EEVDN  + +QRTSVFDRIK  TTR SVFQR+S+   EEENQC MST+TR SAF+RL   
Sbjct: 371 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMSTYTRTSAFKRLSIS 430

Query: 245 ------------------NDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLIN 292
                             NDQ QR++ +L+ K F E + D K+ S V SR+KRK S+ IN
Sbjct: 431 RSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIYSRVPSRIKRKLSIDIN 490

[Close]

BLAST of Spg024757 vs. ExPASy TrEMBL
Match: A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-18
Identity = 67/125 (53.60%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 185 EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL--- 244
           EEVDN  + +QRTSVFDRIK  TTR SVFQR+SI   EEENQC  ST TR SAF+ L   
Sbjct: 463 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSIS 522

Query: 245 ------------------NDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLIN 289
                             NDQ QR++ +L+VK F E + D K+ S V SRMKRK SV IN
Sbjct: 523 TSKKDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHSRVPSRMKRKLSVDIN 582

[Close]

BLAST of Spg024757 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-18
Identity = 65/128 (50.78%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 185 EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL--- 244
           EEVDN  + +QRTSVFDRIK  TTR SVFQR+S+   EEENQC  ST+ R SAF+RL   
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 245 ------------------NDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLIN 292
                             NDQ QR++ +L+ K F E + D K+ S V SRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

[Close]

BLAST of Spg024757 vs. ExPASy TrEMBL
Match: A0A5A7SMQ5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00040 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.9e-18
Identity = 64/128 (50.00%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 185 EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL--- 244
           EEVDN  + +QRTSVFDRIK  TTR S FQR+S+   EEENQC  ST+ R SAF+RL   
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSAFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 245 ------------------NDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLIN 292
                             NDQ QR++ +L+ K F E + D K++S V SRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIRSRVSSRMKRKLSVGIN 239

[Close]

BLAST of Spg024757 vs. ExPASy TrEMBL
Match: A0A5D3D7Q8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1274G00410 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.7e-18
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 185 EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL--- 244
           +EVDN  K +QRTSVFDRIK S TR  VFQR+S+   EEENQC MST+TR SAF++L   
Sbjct: 61  KEVDNSNKNKQRTSVFDRIKPSNTRSLVFQRLSMTMKEEENQCQMSTYTRTSAFKKLSIS 120

Query: 245 ------------------NDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLIN 288
                             N+Q QR++ +L+VK F E ++D ++ S V SRMKRK SV+IN
Sbjct: 121 TSKKDQPSTFAFNCLKMTNNQQQRQMKSLKVKPFHEENNDDEIHSHVSSRMKRKLSVVIN 180

The following BLAST results are available for this feature:

BLAST of Spg024757 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050736.1	1.9e-18	50.78	retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos...	[more]
KAA0044978.1	7.1e-18	50.78	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0040811.1	7.1e-18	53.60	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0025725.1	1.2e-17	50.00	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK19591.1	1.6e-17	49.19	hypothetical protein E5676_scaffold1274G00410 [Cucumis melo var. makuwa]	[more]

BLAST of Spg024757 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024757 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U974	9.1e-19	50.78	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TGM1	3.4e-18	53.60	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7TQ06	3.4e-18	50.78	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7SMQ5	5.9e-18	50.00	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3D7Q8	7.7e-18	49.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg024757 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 153..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024757.1	Spg024757.1	mRNA