Spg024695 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024695
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold12: 9702467 .. 9705699 (+)
RNA-Seq Expression	Spg024695
Synteny	Spg024695

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAGAGGCGAGGCGAGGCGAGGAGAGGGTTATGCTCCTCGTATGGTGCTGGGGCGAGCATATTCAATGAGGCGTGCGCCTTTGGTCGCCTCGTAGGTTTGTCGCCTGTTACACAGGCGCACACCTGATTGAAGATTGCGTAAAAATCTTTTTTTTTTTTTAAATTATGTTTAACATAAGTTAAGAAACCCTAATAATAGCCCACGAAAAAAAGCCCATGAAGGCCATGCAGACGGTTCAACAATTGCTTGTTTGGCAAGTTGTATTTCTCATGCAAAAAGAAAAAACTCCACCTCCACGACGGTTGGCTTTCCACCTTCTTCGGCTTCTTCTGTTGCTTTGTCTACAACTTTCGACTTCTTCTACAAGATTTTCTTCAACCTTTTTCTTCTTCGACGGTAATTTCATCTTCGACTTCTTCGGTTGGCTCTTCATCTTCACAGCTTCTTCTTCATCTTCACGGCTTCTTTGGCTGGCTTTTCACTTTCTTTTGGTTCTTCATCTTCACAGTTTCAGCTTCTCTAGTTCTCCTTCTCCATCTCCTTCAACTGATTTCTTCTTGCTGAGGTAGGCCATAGGTTTTAGTTGTATTATATATATTTTACTTTCTTGTTTGAAATTTGAATACTCCATTTCCATAGAATTGTTAAATTAAAAAAATTATATTATTATGATAGGAATAAAGGATGGGTGAAGTTGAGCAAAAACGAAAACATCCCGGTTGGCAATATGTCATTTTGGAGAATGAGAAGGACACCAAAACTTGCAAATGTACATTTTGTGGAAAAATCACAAAAGGTGGCATTTGTCGAGCAACACAACATTTAGTTGGTGGAAATAGGAATGTCAAAGCATGTTTGAAGTGTCCAACCAACATTTAGTTGGTGGAAATAGGAATGCCAAGCTACGATGCTTATGATTTGAACACAATTGAGGAAAAGGATGAGATGTAAGTCATTGGTGGATCAAGTTCAACGTGTGGAACATCTAGAGAGCGACCAAGTATGAATAGTAGTGGAGTAGTATCTAGTGGAAGGCAATCTCAGTCACAACCAAAGCCACCACGACAAAAGGGAGCAATAGATAAATTTGTCTAATCAAATCCAGCCAAGGTTGTCGATGATAGAAATAGACTGAAGAAGCTTAAACAAACAAACATCACCGAAAAATACAACAAAGAGGGAAGGGATGCTACTGTTCAGTACATCATGCGCTGGATTTATCAAACAGGTATTCCACTAAATACTATTTGATTAAGAAGTTTTCAAATAATGCTAGAAGTTGTGGGTCAATTTGGTCCTGGTCTGATTCCTCCTTCTTATCATGAGGCTATAGTAACATGTTTAAAAATTAAGTCCAATTCACGAAAAACCTAATGAGTAGTCATGAGGTGGAATGGAAAAAAAATGGTTGTTCATTGATGTCAGATGGGTGGACAGATAGAAGAGATAGGACTTTAATTAACTTTTTAGTTCATTCTGCTGCTGGAACGTTGTTTTTAGAATCCATTGATGCATCTTCGTGCATCAAAACTGGAGAAAAGGTATTTGAACTCTTGGATGGAATGGTAGAGAAGATTGGTGAAGAAAATGTCATCCAAGTTGTTACCGATAATGCCTCGAATTATGTCTTAGCTGGAAAGTATTTGGAAGCAAAACGACCACATCTTTATTGGACACCATGTGCTGCCCACTGTTTAGATTTGATTTTAGAGGATATTGGAAAGATAAGCCAAATCAAAACAGGTATTAAAAGGGGCATGGCGCTTAGTGGTTTTATTTATAACCACTTATATGTCCTAAACATGATGAGGGAGTTTACAAATCAACATGAATTGGTGAGACCAGCTGTTACTCGATTTGCAACCTCTTTTTTTACATTGGCCAGTATTCATAGAAATAAATCCAGTTTGAGGAAGATGTTTATTTCTGAGAAATGGACCACTTCTAAATGGGCAAAGGATCCAAAGGGTAAAAGAGTAGCTGACACCATTTTGATGCCATCCTTTTGGAATTTAGTTGTCTATACTTTAAAGGCATCAAGACCATTAGTTCGGGTTCTTAGACTTGTTGATGGTGATAAACCTGCGTCGGGATATATATATGAGGCCATGGATAGAGCAAAAGAGGCCATTAAGTCTGGGTTTAACAATAATGAAGTGAAGTATCACAACCAATATGGGATATCATTGATAAAAGATGGGATTGCCAACTTCATCGACCATTACATGCAGCTGGATATTATTTGAATCCATCTCTTTTCTATGACCACAAAGAAAGAATTATTCAAGATGTTGAGGTCATGAGTGGATTGCTTAAAGTTGTGCAACGATTGATACCATTGACTAGTGACCAAAATCGATGCACAGTGGAATTAGAATTAAAATATTATGAAGCTAAAGGCATGTTTGGTATCGATTTGGAAATCAACACTAGGAAGATTAAGACACCAGGTAATGACATTCTTTATTACTTAAATAGTGTTGTGTTAAAGTTAAAGTTATTCTAAAATCCAAAGTTTAATGTTCTAAACCATTTCAAAATATCTGAACAACATCATGGTGAGCTCTTTATGGAGGTAGTACTCCAATCTTACAAAAGCTAGCCATGAGAGTACTTAATTTGACGTGTAGTGCTTCTGGTTGTGAGGGCAATTGGAGTGTTTTTGAACACGTAAGCAGATAATTTGTTTTTTACATTATTAATTTGAGATTTAAAAGTTTACTTTTAACTTTATGTTGGTTAATAATTTTGTAGATTCATTCGAAGAAGAGAAACAGATTAGAGCAAAAGCGTTTAAATGATTTGGTTTATATAAAATATAACCAAGCACTTAAAGAACGCTTTGATCTAAAGGATCAGTTTGATCCATTTTCTCTAGATCATATTGATGAAAGCAATGAGTGGCTGGTCGGAACAGTCGAAGAGGAAAATGATGAAGCTGAAGTAGATCACGAGCTAGTTTTTGATGATGAAGACCTCACATGGGGAGACGTAGCTCGTGCTAGTGGTGTTAAAGAACCCTTAAAGTACACAAGATCTAAAGGAAAGACACCGGCAAGTGCAACTCCCACAACTTCTAGAAGTCGACCACCGACTATACAGGTGGTTAGTGACAACGATGATGACGATGAAGAAGAGTTGGATATTGAAGAAGATAATGGCCAAGGAGGAGCAGTAGATGAGGCCTTACATTTAGAAGGAGAGGAGGATGGTGATTTTGACCTTTAA

mRNA sequence

ATGACGAGAGGCGAGGCGAGGCGAGGAGAGGGTTATGCTCCTCGTATGGTGCTGGGGCGAGCATATTCAATGAGGCGTGCGCCTTTGGTCGCCTCATTTTCTTCAACCTTTTTCTTCTTCGACGGTAATTTCATCTTCGACTTCTTCGGTTGGCTCTTCATCTTCACAGCTTCTTCTTCATCTTCACGGCTTCTTTGGCTGGCTTTTCACTTTCTTTTGGTTCTTCATCTTCACAGTTTCAGCTTCTCTAGTTCTCCTTCTCCATCTCCTTCAACTGATTTCTTCTTGCTGAGAAGTCGACCACCGACTATACAGGTGGTTAGTGACAACGATGATGACGATGAAGAAGAGTTGGATATTGAAGAAGATAATGGCCAAGGAGGAGCAGTAGATGAGGCCTTACATTTAGAAGGAGAGGAGGATGGTGATTTTGACCTTTAA

Coding sequence (CDS)

ATGACGAGAGGCGAGGCGAGGCGAGGAGAGGGTTATGCTCCTCGTATGGTGCTGGGGCGAGCATATTCAATGAGGCGTGCGCCTTTGGTCGCCTCATTTTCTTCAACCTTTTTCTTCTTCGACGGTAATTTCATCTTCGACTTCTTCGGTTGGCTCTTCATCTTCACAGCTTCTTCTTCATCTTCACGGCTTCTTTGGCTGGCTTTTCACTTTCTTTTGGTTCTTCATCTTCACAGTTTCAGCTTCTCTAGTTCTCCTTCTCCATCTCCTTCAACTGATTTCTTCTTGCTGAGAAGTCGACCACCGACTATACAGGTGGTTAGTGACAACGATGATGACGATGAAGAAGAGTTGGATATTGAAGAAGATAATGGCCAAGGAGGAGCAGTAGATGAGGCCTTACATTTAGAAGGAGAGGAGGATGGTGATTTTGACCTTTAA

Protein sequence

MTRGEARRGEGYAPRMVLGRAYSMRRAPLVASFSSTFFFFDGNFIFDFFGWLFIFTASSSSSRLLWLAFHFLLVLHLHSFSFSSSPSPSPSTDFFLLRSRPPTIQVVSDNDDDDEEELDIEEDNGQGGAVDEALHLEGEEDGDFDL

Homology

[Close]

BLAST of Spg024695 vs. NCBI nr
Match: XP_038905943.1 (uncharacterized protein LOC120091866 [Benincasa hispida])

HSP 1 Score: 58.5 bits (140), Expect = 5.4e-05
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 84  SSPSPSPSTDFFLLRSRPPTIQVVSDND-DDDEEELDIEEDNGQGGAVDEALHLEGEEDG 143
           S    + ST  F ++ + P IQV  D D DDDEEELDIEEDNGQGG +DE L L+G +D 
Sbjct: 116 SKGKSAASTSTFRVQKQTPIIQVFGDEDEDDDEEELDIEEDNGQGGGIDETLDLDG-DDV 175

Query: 144 DFDL 147
           +FD+
Sbjct: 176 EFDV 178

The following BLAST results are available for this feature:

BLAST of Spg024695 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905943.1	5.4e-05	54.69	uncharacterized protein LOC120091866 [Benincasa hispida]	[more]

BLAST of Spg024695 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024695 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024695 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024695.1	Spg024695.1	mRNA